Wall clock time and date at job start Sun Mar 7 2021 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 H 1.00900 * 109.47416 * 2 1 4 4 C 1.46897 * 109.47347 * 119.99923 * 2 1 3 5 5 C 1.46901 * 109.46847 * 240.00381 * 2 1 3 6 6 C 1.52993 * 109.47603 * 64.99776 * 5 2 1 7 7 H 1.09006 * 112.84890 * 43.80504 * 6 5 2 8 8 C 1.53782 * 113.61845 * 174.99901 * 6 5 2 9 9 C 1.53777 * 87.08014 * 139.98181 * 8 6 5 10 10 H 1.08998 * 113.61685 * 219.93574 * 9 8 6 11 11 N 1.46505 * 113.61418 * 89.11766 * 9 8 6 12 12 C 1.34780 * 119.99898 * 154.99722 * 11 9 8 13 13 O 1.21587 * 120.00093 * 0.02562 * 12 11 9 14 14 C 1.47527 * 119.99868 * 180.02562 * 12 11 9 15 15 C 1.40137 * 120.19264 * 179.97438 * 14 12 11 16 16 O 1.35649 * 120.14910 * 0.04492 * 15 14 12 17 17 C 1.38713 * 119.70167 * 179.79147 * 15 14 12 18 18 C 1.38056 * 120.08095 * 0.48401 * 17 15 14 19 19 C 1.50705 * 119.80193 * 179.76377 * 18 17 15 20 20 O 1.42894 * 109.47171 * 299.72826 * 19 18 17 21 21 Si 1.86298 * 109.46780 * 179.72266 * 19 18 17 22 22 C 1.38551 * 120.39226 * 359.49274 * 18 17 15 23 23 C 1.37786 * 120.29919 * 0.27516 * 22 18 17 24 24 C 1.53777 * 87.08599 * 334.57062 * 9 8 6 25 25 H 1.09005 * 109.46879 * 299.99549 * 1 2 3 26 26 H 1.08994 * 109.47422 * 59.99919 * 1 2 3 27 27 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47480 * 179.97438 * 4 2 1 29 29 H 1.08991 * 109.47679 * 300.00036 * 4 2 1 30 30 H 1.09003 * 109.47141 * 60.00401 * 4 2 1 31 31 H 1.08998 * 109.47150 * 304.99269 * 5 2 1 32 32 H 1.09001 * 109.47066 * 185.00049 * 5 2 1 33 33 H 1.08997 * 113.61111 * 25.43206 * 8 6 5 34 34 H 1.08998 * 113.61242 * 254.53056 * 8 6 5 35 35 H 0.96996 * 119.99636 * 334.99907 * 11 9 8 36 36 H 0.96700 * 114.00364 * 89.99943 * 16 15 14 37 37 H 1.07997 * 119.95968 * 180.25520 * 17 15 14 38 38 H 1.09004 * 109.46779 * 59.73149 * 19 18 17 39 39 H 0.96709 * 113.99337 * 180.02562 * 20 19 18 40 40 H 1.48506 * 109.99834 * 60.00830 * 21 19 18 41 41 H 1.48502 * 110.00011 * 181.32094 * 21 19 18 42 42 H 1.07996 * 119.84645 * 180.25545 * 22 18 17 43 43 H 1.07999 * 120.04881 * 180.02562 * 23 22 18 44 44 H 1.09000 * 113.61939 * 139.97946 * 24 9 8 45 45 H 1.09004 * 113.61638 * 270.88822 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9586 -0.6924 -1.1995 6 6 1.5538 0.0977 -2.4455 7 1 1.7118 1.1707 -2.3362 8 6 2.1233 -0.4788 -3.7526 9 6 0.7621 -0.1611 -4.3936 10 1 0.4119 -0.9323 -5.0797 11 7 0.6818 1.1862 -4.9633 12 6 -0.1886 1.4461 -5.9590 13 8 -0.9075 0.5625 -6.3841 14 6 -0.2690 2.8027 -6.5331 15 6 -1.1722 3.0773 -7.5689 16 8 -1.9777 2.0968 -8.0481 17 6 -1.2424 4.3575 -8.0982 18 6 -0.4185 5.3532 -7.6126 19 6 -0.4963 6.7406 -8.1960 20 8 -0.1871 6.6891 -9.5901 21 14 0.7256 7.8480 -7.3292 22 6 0.4755 5.0859 -6.5884 23 6 0.5551 3.8211 -6.0477 24 6 0.1605 -0.2700 -2.9826 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.0487 -0.6929 1.1992 29 1 1.5954 -0.1787 2.0894 30 1 1.5954 -1.7202 1.1994 31 1 1.5240 -1.6910 -1.2454 32 1 3.0449 -0.7707 -1.1559 33 1 2.3431 -1.5450 -3.7002 34 1 2.9467 0.1045 -4.1647 35 1 1.2551 1.8912 -4.6239 36 1 -2.8278 2.0282 -7.5924 37 1 -1.9398 4.5747 -8.8937 38 1 -1.5034 7.1353 -8.0614 39 1 -0.2176 7.5490 -10.0317 40 1 2.1027 7.3206 -7.5052 41 1 0.6365 9.2268 -7.8735 42 1 1.1129 5.8724 -6.2125 43 1 1.2531 3.6173 -5.2491 44 1 -0.6006 0.4817 -2.7731 45 1 -0.1563 -1.2793 -2.7196 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:31:56 Heat of formation + Delta-G solvation = 52.999279 kcal Electronic energy + Delta-G solvation = -25654.591578 eV Core-core repulsion = 21951.395907 eV Total energy + Delta-G solvation = -3703.195671 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.29620 -41.59236 -40.28849 -38.97283 -38.36156 -37.35612 -34.70198 -32.76736 -31.15238 -30.10673 -29.47057 -27.62091 -26.67420 -25.80133 -24.11287 -23.86145 -23.31352 -21.82140 -20.62578 -19.37363 -19.06812 -18.76482 -18.59819 -17.83066 -17.54130 -17.26070 -16.77195 -16.53971 -16.29599 -16.01224 -15.66374 -15.56412 -15.19123 -14.97097 -14.53960 -14.13383 -14.00666 -13.99651 -13.73323 -13.54388 -13.51611 -13.36531 -13.26202 -13.10592 -13.02110 -12.71367 -12.48891 -12.22136 -12.09984 -11.71556 -11.63144 -11.33417 -10.97583 -10.66094 -10.23206 -10.00910 -9.79764 -4.98058 -0.45334 0.11824 1.07318 1.23320 1.60521 1.66133 1.96162 1.97595 2.52037 2.91418 2.99430 3.05315 3.24001 3.26354 3.38293 3.49304 3.54962 3.68148 3.75978 3.78646 3.82725 4.05531 4.09321 4.21221 4.23789 4.24926 4.28714 4.37750 4.43951 4.54216 4.58311 4.71542 4.74089 4.75172 4.80540 4.82208 4.87863 4.91251 4.96005 4.98390 5.05689 5.10502 5.17218 5.25287 5.54179 5.56933 6.43577 6.47520 6.67423 7.15720 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.003218 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.048926 B = 8698.387852 C = 9707.205223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 H 0.440 0.560 4 C -0.047 4.047 5 C 0.008 3.992 6 C -0.116 4.116 7 H 0.137 0.863 8 C -0.129 4.129 9 C 0.090 3.910 10 H 0.064 0.936 11 N -0.693 5.693 12 C 0.560 3.440 13 O -0.565 6.565 14 C -0.182 4.182 15 C 0.149 3.851 16 O -0.501 6.501 17 C -0.149 4.149 18 C -0.036 4.036 19 C -0.106 4.106 20 O -0.562 6.562 21 Si 0.789 3.211 22 C -0.134 4.134 23 C -0.045 4.045 24 C -0.149 4.149 25 H 0.127 0.873 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.417 0.583 36 H 0.407 0.593 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.397 0.603 40 H -0.287 1.287 41 H -0.300 1.300 42 H 0.164 0.836 43 H 0.184 0.816 44 H 0.083 0.917 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.870 -7.859 32.399 34.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 N 0.057 4.943 3 H 0.277 0.723 4 C -0.189 4.189 5 C -0.114 4.114 6 C -0.134 4.134 7 H 0.154 0.846 8 C -0.167 4.167 9 C -0.016 4.016 10 H 0.082 0.918 11 N -0.346 5.346 12 C 0.348 3.652 13 O -0.444 6.444 14 C -0.185 4.185 15 C 0.102 3.898 16 O -0.314 6.314 17 C -0.167 4.167 18 C -0.037 4.037 19 C -0.213 4.213 20 O -0.373 6.373 21 Si 0.694 3.306 22 C -0.151 4.151 23 C -0.063 4.063 24 C -0.188 4.188 25 H 0.146 0.854 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.256 0.744 36 H 0.267 0.733 37 H 0.143 0.857 38 H 0.114 0.886 39 H 0.248 0.752 40 H -0.214 1.214 41 H -0.228 1.228 42 H 0.181 0.819 43 H 0.201 0.799 44 H 0.102 0.898 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.463 -8.999 31.790 34.106 hybrid contribution -0.821 0.859 -1.994 2.321 sum 7.642 -8.140 29.796 31.819 Atomic orbital electron populations 1.24273 0.76799 1.09453 1.09468 1.44798 1.15477 1.19559 1.14508 0.72252 1.24115 1.05797 1.02256 0.86684 1.23912 1.06077 0.99362 0.82028 1.23006 0.95479 1.02313 0.92627 0.84558 1.23286 0.95358 1.03758 0.94320 1.22039 0.99909 0.83865 0.95764 0.91762 1.45338 1.40121 1.12835 1.36336 1.18175 0.80310 0.87150 0.79565 1.90847 1.44202 1.47826 1.61501 1.20454 1.03011 0.95147 0.99935 1.18799 0.92502 0.86971 0.91491 1.84744 1.32534 1.52974 1.61132 1.21359 1.02130 0.91793 1.01448 1.19639 0.94623 0.94140 0.95291 1.25365 1.09583 1.00043 0.86271 1.86550 1.92773 1.36998 1.20960 0.94275 0.75247 0.73214 0.87914 1.21239 0.98476 0.98391 0.96979 1.21498 0.95992 0.90253 0.98540 1.23777 0.97095 1.04124 0.93771 0.85432 0.86393 0.86432 0.85452 0.85681 0.86606 0.84879 0.83280 0.87257 0.89645 0.74364 0.73283 0.85733 0.88598 0.75224 1.21434 1.22784 0.81912 0.79885 0.89829 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.62 8.57 127.69 1.09 4.72 16 2 N -0.37 24.76 0.66 -948.89 -0.62 24.13 16 3 H 0.44 -31.69 8.40 -89.69 -0.75 -32.44 16 4 C -0.05 3.03 9.19 127.69 1.17 4.20 16 5 C 0.01 -0.51 4.57 86.30 0.39 -0.12 16 6 C -0.12 6.35 3.18 -10.27 -0.03 6.32 16 7 H 0.14 -8.10 8.10 -2.38 -0.02 -8.12 16 8 C -0.13 5.67 7.39 31.12 0.23 5.90 16 9 C 0.09 -3.08 4.32 45.51 0.20 -2.88 16 10 H 0.06 -1.53 7.46 -2.39 -0.02 -1.55 16 11 N -0.69 21.57 5.21 -443.21 -2.31 19.26 16 12 C 0.56 -10.20 7.76 86.69 0.67 -9.52 16 13 O -0.56 4.28 14.76 16.93 0.25 4.53 16 14 C -0.18 3.26 5.89 -20.01 -0.12 3.14 16 15 C 0.15 -1.67 6.72 22.84 0.15 -1.52 16 16 O -0.50 3.84 11.58 -68.72 -0.80 3.05 16 17 C -0.15 1.73 9.53 22.34 0.21 1.94 16 18 C -0.04 0.58 5.43 -19.83 -0.11 0.47 16 19 C -0.11 1.78 2.80 71.24 0.20 1.98 16 20 O -0.56 6.47 12.74 -148.98 -1.90 4.57 16 21 Si 0.79 -15.84 29.77 68.60 2.04 -13.80 16 22 C -0.13 3.03 8.64 22.24 0.19 3.22 16 23 C -0.04 1.16 9.54 22.52 0.21 1.38 16 24 C -0.15 6.79 5.69 31.12 0.18 6.97 16 25 H 0.13 -8.05 8.14 -2.38 -0.02 -8.07 16 26 H 0.12 -7.16 5.13 -2.39 -0.01 -7.17 16 27 H 0.12 -7.20 8.11 -2.39 -0.02 -7.22 16 28 H 0.13 -8.28 8.11 -2.39 -0.02 -8.29 16 29 H 0.12 -8.03 8.14 -2.39 -0.02 -8.05 16 30 H 0.12 -7.29 8.14 -2.39 -0.02 -7.31 16 31 H 0.13 -8.25 7.79 -2.39 -0.02 -8.26 16 32 H 0.15 -9.64 8.09 -2.39 -0.02 -9.66 16 33 H 0.11 -4.81 8.10 -2.39 -0.02 -4.83 16 34 H 0.08 -3.61 8.14 -2.39 -0.02 -3.63 16 35 H 0.42 -16.45 6.73 -92.71 -0.62 -17.07 16 36 H 0.41 -6.28 9.06 -74.06 -0.67 -6.95 16 37 H 0.12 -1.21 8.06 -2.91 -0.02 -1.23 16 38 H 0.10 -1.92 7.96 -2.38 -0.02 -1.94 16 39 H 0.40 -7.43 8.74 -74.05 -0.65 -8.08 16 40 H -0.29 4.13 7.11 99.48 0.71 4.83 16 41 H -0.30 3.90 7.11 99.48 0.71 4.61 16 42 H 0.16 -4.60 4.85 -2.91 -0.01 -4.61 16 43 H 0.18 -6.90 6.40 -2.91 -0.02 -6.92 16 44 H 0.08 -3.71 7.18 -2.39 -0.02 -3.73 16 45 H 0.11 -5.00 7.90 -2.39 -0.02 -5.02 16 Total: 1.00 -92.51 356.91 -0.30 -92.81 By element: Atomic # 1 Polarization: -159.12 SS G_CDS: -1.62 Total: -160.74 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 4.65 Total: 26.19 kcal Atomic # 7 Polarization: 46.33 SS G_CDS: -2.93 Total: 43.39 kcal Atomic # 8 Polarization: 14.59 SS G_CDS: -2.44 Total: 12.15 kcal Atomic # 14 Polarization: -15.84 SS G_CDS: 2.04 Total: -13.80 kcal Total: -92.51 -0.30 -92.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.810 kcal (2) G-P(sol) polarization free energy of solvation -92.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds