Wall clock time and date at job start Sun Mar 7 2021 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 H 1.00898 * 109.47403 * 2 1 4 4 C 1.46896 * 109.46962 * 120.00844 * 2 1 3 5 5 C 1.46906 * 109.46669 * 240.00781 * 2 1 3 6 6 C 1.53005 * 109.46804 * 175.00286 * 5 2 1 7 7 H 1.08998 * 112.84850 * 43.80326 * 6 5 2 8 8 C 1.53784 * 113.61118 * 174.99766 * 6 5 2 9 9 C 1.53784 * 87.07760 * 140.06447 * 8 6 5 10 10 H 1.08997 * 113.60843 * 219.93397 * 9 8 6 11 11 N 1.46495 * 113.61294 * 89.11473 * 9 8 6 12 12 C 1.34787 * 119.99752 * 154.99437 * 11 9 8 13 13 O 1.21621 * 119.99770 * 0.02562 * 12 11 9 14 14 C 1.47258 * 119.99790 * 179.97438 * 12 11 9 15 15 C 1.36339 * 126.96839 * 180.02562 * 14 12 11 16 16 C 1.51203 * 126.75819 * 0.05709 * 15 14 12 17 17 C 1.53392 * 108.14196 * 164.27717 * 16 15 14 18 18 C 1.53160 * 109.11241 * 48.46496 * 17 16 15 19 19 C 1.53126 * 109.53065 * 290.38207 * 18 17 16 20 20 N 1.35212 * 108.66355 * 179.97438 * 15 14 12 21 21 C 1.36425 * 109.89919 * 359.97430 * 20 15 14 22 22 C 1.50698 * 125.49717 * 180.02562 * 21 20 15 23 23 O 1.42907 * 109.46580 * 30.00382 * 22 21 20 24 24 Si 1.86295 * 109.47229 * 150.00052 * 22 21 20 25 25 C 1.34501 * 109.01037 * 0.02562 * 21 20 15 26 26 C 1.53774 * 87.08121 * 334.56651 * 9 8 6 27 27 H 1.08994 * 109.47254 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46573 * 299.99710 * 1 2 3 29 29 H 1.08999 * 109.47044 * 59.98888 * 1 2 3 30 30 H 1.09003 * 109.46717 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47394 * 299.99535 * 4 2 1 32 32 H 1.09002 * 109.47483 * 59.99692 * 4 2 1 33 33 H 1.08995 * 109.47588 * 55.00028 * 5 2 1 34 34 H 1.09007 * 109.46762 * 294.99978 * 5 2 1 35 35 H 1.08994 * 113.61335 * 25.51655 * 8 6 5 36 36 H 1.09000 * 113.69262 * 254.62222 * 8 6 5 37 37 H 0.96993 * 120.00512 * 335.00481 * 11 9 8 38 38 H 1.09005 * 109.81010 * 44.59024 * 16 15 14 39 39 H 1.08994 * 109.70536 * 283.90325 * 16 15 14 40 40 H 1.09002 * 109.54525 * 288.55158 * 17 16 15 41 41 H 1.08999 * 109.53833 * 168.37539 * 17 16 15 42 42 H 1.09002 * 109.46330 * 50.40384 * 18 17 16 43 43 H 1.09005 * 109.46114 * 170.36134 * 18 17 16 44 44 H 1.09004 * 109.55909 * 170.80654 * 19 18 17 45 45 H 1.08997 * 109.56603 * 291.02749 * 19 18 17 46 46 H 1.08998 * 109.47382 * 270.00614 * 22 21 20 47 47 H 0.96699 * 113.99695 * 60.00473 * 23 22 21 48 48 H 1.48500 * 110.00122 * 179.97438 * 24 22 21 49 49 H 1.48502 * 110.00357 * 301.32518 * 24 22 21 50 50 H 1.08003 * 126.81301 * 180.02562 * 25 21 20 51 51 H 1.08999 * 113.61609 * 139.98460 * 26 9 8 52 52 H 1.09006 * 113.61854 * 270.88625 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9586 -0.6927 1.1993 5 6 1.9586 -0.6924 -1.1996 6 6 3.4835 -0.5845 -1.2640 7 1 3.9615 -0.7640 -0.3011 8 6 4.1091 -1.3820 -2.4206 9 6 5.0681 -0.1957 -2.6156 10 1 5.2620 0.0415 -3.6616 11 7 6.2929 -0.2941 -1.8179 12 6 7.4112 0.3424 -2.2190 13 8 7.4033 0.9987 -3.2429 14 6 8.6423 0.2440 -1.4169 15 6 9.8455 0.8256 -1.6869 16 6 10.1809 1.7028 -2.8719 17 6 11.4918 2.4382 -2.5659 18 6 12.5253 1.4296 -2.0557 19 6 12.1169 0.9377 -0.6643 20 7 10.7166 0.4922 -0.7080 21 6 10.0998 -0.3063 0.2103 22 6 10.7455 -0.8798 1.4453 23 8 11.7691 0.0064 1.9028 24 14 9.4610 -1.0860 2.7788 25 6 8.8225 -0.4991 -0.1643 26 6 3.9836 0.6851 -1.9731 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 3.0486 -0.6930 1.1990 31 1 1.5954 -0.1789 2.0894 32 1 1.5953 -1.7203 1.1992 33 1 1.5240 -0.2328 -2.0873 34 1 1.6701 -1.7427 -1.1560 35 1 3.4315 -1.5382 -3.2599 36 1 4.6067 -2.2980 -2.1022 37 1 6.2991 -0.8173 -1.0012 38 1 9.3822 2.4268 -3.0334 39 1 10.3045 1.0863 -3.7622 40 1 11.3149 3.1966 -1.8031 41 1 11.8635 2.9137 -3.4735 42 1 12.5751 0.5828 -2.7402 43 1 13.5029 1.9085 -1.9991 44 1 12.7560 0.1053 -0.3694 45 1 12.2206 1.7499 0.0551 46 1 11.1833 -1.8497 1.2094 47 1 11.4506 0.8903 2.1315 48 1 10.0850 -1.6514 4.0020 49 1 8.8340 0.2244 3.0871 50 1 8.0773 -1.0841 0.3542 51 1 4.3797 1.4383 -1.2920 52 1 3.2717 1.0940 -2.6901 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_16915396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:32:38 Heat of formation + Delta-G solvation = 101.874303 kcal Electronic energy + Delta-G solvation = -30180.025472 eV Core-core repulsion = 26265.592605 eV Total energy + Delta-G solvation = -3914.432867 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.212 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.82721 -42.11106 -40.58273 -38.87870 -38.09642 -36.93534 -34.36569 -33.51093 -31.21326 -30.31393 -29.35596 -29.20986 -26.78269 -26.69471 -25.80320 -24.69434 -24.40901 -23.30605 -21.76647 -21.30605 -20.39127 -19.64358 -19.28049 -18.91240 -17.70500 -17.42489 -17.09050 -17.07361 -16.81675 -16.57300 -15.97865 -15.80084 -15.53350 -15.37255 -15.27518 -15.11604 -15.02126 -14.69847 -14.53362 -14.36535 -13.95508 -13.88444 -13.69326 -13.47220 -13.40836 -13.22720 -13.17101 -13.07357 -12.77520 -12.74931 -12.45709 -12.21269 -12.08543 -11.94067 -11.89801 -11.80963 -11.60064 -11.25869 -10.93450 -10.91950 -10.06496 -9.59289 -9.07322 -4.96211 0.68992 1.05826 1.08975 1.41705 1.68781 1.74894 2.06284 2.37841 2.52379 2.97916 3.02738 3.19263 3.25075 3.42906 3.47143 3.51599 3.53114 3.61347 3.71479 3.75092 3.82728 3.88757 3.97820 4.15286 4.22178 4.24762 4.29784 4.32376 4.32464 4.43959 4.48800 4.52505 4.57268 4.57936 4.68496 4.71026 4.73305 4.74550 4.81436 4.83148 4.87865 4.90219 4.93175 4.94584 4.94879 5.05252 5.10623 5.12046 5.14316 5.28189 5.68098 5.74106 6.01209 6.15419 6.33802 6.68242 7.38718 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.003350 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.148999 B = 8355.102610 C =10122.330407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.373 5.373 3 H 0.435 0.565 4 C -0.056 4.056 5 C 0.009 3.991 6 C -0.119 4.119 7 H 0.134 0.866 8 C -0.126 4.126 9 C 0.093 3.907 10 H 0.064 0.936 11 N -0.694 5.694 12 C 0.592 3.408 13 O -0.591 6.591 14 C -0.253 4.253 15 C 0.096 3.904 16 C -0.053 4.053 17 C -0.125 4.125 18 C -0.137 4.137 19 C 0.106 3.894 20 N -0.431 5.431 21 C -0.022 4.022 22 C -0.072 4.072 23 O -0.550 6.550 24 Si 0.827 3.173 25 C -0.150 4.150 26 C -0.152 4.152 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.417 0.583 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.384 0.616 48 H -0.310 1.310 49 H -0.281 1.281 50 H 0.196 0.804 51 H 0.074 0.926 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.221 -4.060 6.819 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.051 4.949 3 H 0.271 0.729 4 C -0.198 4.198 5 C -0.113 4.113 6 C -0.137 4.137 7 H 0.152 0.848 8 C -0.164 4.164 9 C -0.013 4.013 10 H 0.083 0.917 11 N -0.346 5.346 12 C 0.382 3.618 13 O -0.473 6.473 14 C -0.263 4.263 15 C -0.022 4.022 16 C -0.090 4.090 17 C -0.163 4.163 18 C -0.174 4.174 19 C -0.015 4.015 20 N -0.107 5.107 21 C -0.130 4.130 22 C -0.179 4.179 23 O -0.357 6.357 24 Si 0.730 3.270 25 C -0.174 4.174 26 C -0.191 4.191 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.255 0.745 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.140 0.860 47 H 0.233 0.767 48 H -0.239 1.239 49 H -0.207 1.207 50 H 0.213 0.787 51 H 0.092 0.908 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -29.842 -4.081 6.846 30.888 hybrid contribution 1.622 1.312 -0.131 2.090 sum -28.220 -2.770 6.715 29.139 Atomic orbital electron populations 1.24117 0.75643 1.09578 1.09505 1.44814 1.15886 1.19320 1.14841 0.72878 1.24237 1.06016 1.02683 0.86874 1.23920 0.95222 1.03713 0.88453 1.23072 0.93469 0.96321 1.00846 0.84795 1.23271 0.97156 0.96823 0.99169 1.21965 0.84028 0.99676 0.95617 0.91718 1.45184 1.09137 1.52144 1.28140 1.17473 0.83150 0.77978 0.83215 1.90779 1.85654 1.43710 1.27166 1.20006 0.93636 1.11315 1.01373 1.20644 0.89635 0.99725 0.92218 1.20437 0.98328 0.96969 0.93295 1.21693 0.94137 0.97809 1.02662 1.21925 1.00695 0.99864 0.94951 1.22170 0.78766 1.01377 0.99143 1.44050 1.10391 1.38163 1.18131 1.21074 0.94260 1.02035 0.95676 1.25324 0.99381 0.95312 0.97886 1.86601 1.35439 1.27190 1.86515 0.93747 0.78710 0.81737 0.72840 1.22015 0.95367 1.03917 0.96075 1.23662 0.98031 0.96837 1.00542 0.85990 0.85792 0.85979 0.85668 0.85733 0.85697 0.84354 0.83676 0.87230 0.89448 0.74523 0.89766 0.90577 0.91270 0.89724 0.91481 0.87992 0.88829 0.89020 0.85976 0.76662 1.23896 1.20745 0.78682 0.90763 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.96 9.19 127.69 1.17 4.14 16 2 N -0.37 24.60 0.66 -948.84 -0.62 23.98 16 3 H 0.44 -29.60 8.44 -89.70 -0.76 -30.36 16 4 C -0.06 3.61 8.98 127.69 1.15 4.75 16 5 C 0.01 -0.54 4.48 86.30 0.39 -0.16 16 6 C -0.12 6.31 3.45 -10.27 -0.04 6.27 16 7 H 0.13 -7.65 6.10 -2.39 -0.01 -7.66 16 8 C -0.13 5.41 7.39 31.12 0.23 5.64 16 9 C 0.09 -3.03 4.32 45.52 0.20 -2.83 16 10 H 0.06 -1.47 7.46 -2.39 -0.02 -1.49 16 11 N -0.69 19.96 5.26 -443.47 -2.33 17.63 16 12 C 0.59 -9.61 7.81 86.61 0.68 -8.93 16 13 O -0.59 4.01 14.93 -4.10 -0.06 3.94 16 14 C -0.25 4.01 6.28 -19.12 -0.12 3.89 16 15 C 0.10 -1.19 6.57 41.75 0.27 -0.92 16 16 C -0.05 0.61 5.34 30.14 0.16 0.77 16 17 C -0.13 1.90 5.97 30.78 0.18 2.09 16 18 C -0.14 2.24 5.92 30.69 0.18 2.43 16 19 C 0.11 -1.73 5.32 86.32 0.46 -1.27 16 20 N -0.43 6.37 3.11 -493.38 -1.53 4.84 16 21 C -0.02 0.41 6.15 40.99 0.25 0.66 16 22 C -0.07 1.45 2.99 71.24 0.21 1.66 16 23 O -0.55 8.98 10.68 -148.98 -1.59 7.39 16 24 Si 0.83 -19.94 31.11 68.60 2.13 -17.81 16 25 C -0.15 3.39 9.09 23.64 0.21 3.61 16 26 C -0.15 6.54 7.43 31.12 0.23 6.77 16 27 H 0.12 -7.69 8.14 -2.39 -0.02 -7.71 16 28 H 0.12 -7.81 8.14 -2.39 -0.02 -7.83 16 29 H 0.12 -7.67 8.11 -2.39 -0.02 -7.69 16 30 H 0.12 -8.03 6.10 -2.39 -0.01 -8.05 16 31 H 0.12 -7.92 8.14 -2.39 -0.02 -7.94 16 32 H 0.12 -7.97 8.11 -2.39 -0.02 -7.99 16 33 H 0.14 -8.54 7.79 -2.39 -0.02 -8.55 16 34 H 0.15 -9.14 8.09 -2.38 -0.02 -9.16 16 35 H 0.11 -4.76 8.10 -2.39 -0.02 -4.78 16 36 H 0.09 -3.64 8.14 -2.39 -0.02 -3.66 16 37 H 0.42 -15.19 7.83 -92.71 -0.73 -15.91 16 38 H 0.08 -0.77 7.41 -2.38 -0.02 -0.79 16 39 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 40 H 0.07 -1.05 8.12 -2.39 -0.02 -1.07 16 41 H 0.08 -1.34 8.14 -2.39 -0.02 -1.36 16 42 H 0.07 -0.96 8.11 -2.39 -0.02 -0.98 16 43 H 0.10 -1.90 8.14 -2.38 -0.02 -1.92 16 44 H 0.09 -1.44 7.70 -2.38 -0.02 -1.46 16 45 H 0.09 -1.66 7.94 -2.39 -0.02 -1.68 16 46 H 0.12 -2.50 7.96 -2.39 -0.02 -2.52 16 47 H 0.38 -8.04 8.63 -74.06 -0.64 -8.68 16 48 H -0.31 4.44 7.11 99.48 0.71 5.15 16 49 H -0.28 5.68 7.11 99.48 0.71 6.38 16 50 H 0.20 -6.55 6.52 -2.91 -0.02 -6.57 16 51 H 0.07 -2.98 8.14 -2.39 -0.02 -3.00 16 52 H 0.11 -4.72 7.90 -2.38 -0.02 -4.74 16 Total: 1.00 -84.90 398.21 0.66 -84.24 By element: Atomic # 1 Polarization: -151.62 SS G_CDS: -1.16 Total: -152.78 kcal Atomic # 6 Polarization: 22.75 SS G_CDS: 5.83 Total: 28.57 kcal Atomic # 7 Polarization: 50.93 SS G_CDS: -4.49 Total: 46.44 kcal Atomic # 8 Polarization: 12.98 SS G_CDS: -1.65 Total: 11.33 kcal Atomic # 14 Polarization: -19.94 SS G_CDS: 2.13 Total: -17.81 kcal Total: -84.90 0.66 -84.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_16915396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.118 kcal (2) G-P(sol) polarization free energy of solvation -84.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds