Wall clock time and date at job start Sun Mar 7 2021 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00895 * 109.46933 * 2 1 4 4 C 1.46898 * 109.47373 * 120.00159 * 2 1 3 5 5 C 1.46904 * 109.47131 * 240.00005 * 2 1 3 6 6 C 1.53004 * 109.46934 * 175.00038 * 5 2 1 7 7 H 1.09001 * 112.84739 * 316.19331 * 6 5 2 8 8 C 1.53779 * 113.61667 * 87.50207 * 6 5 2 9 9 C 1.53783 * 87.07914 * 139.97934 * 8 6 5 10 10 H 1.09003 * 113.68746 * 220.00722 * 9 8 6 11 11 N 1.46499 * 113.61254 * 89.12073 * 9 8 6 12 12 C 1.34777 * 120.00199 * 107.50239 * 11 9 8 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 9 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 O 1.42898 * 109.47180 * 179.97438 * 15 14 12 17 17 C 1.35902 * 116.99909 * 179.97438 * 16 15 14 18 18 C 1.38710 * 120.05558 * 179.72414 * 17 16 15 19 19 C 1.38172 * 119.94345 * 179.72301 * 18 17 16 20 20 C 1.50696 * 119.96979 * 180.27605 * 19 18 17 21 21 O 1.42895 * 109.47515 * 300.25527 * 20 19 18 22 22 Si 1.86305 * 109.46817 * 180.25612 * 20 19 18 23 23 C 1.38242 * 120.05175 * 0.53309 * 19 18 17 24 24 C 1.38283 * 120.11578 * 359.76626 * 23 19 18 25 25 C 1.38126 * 120.05595 * 359.95770 * 24 23 19 26 26 C 1.53779 * 113.61236 * 185.00288 * 6 5 2 27 27 H 1.09001 * 109.46802 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47492 * 300.00041 * 1 2 3 29 29 H 1.08998 * 109.47039 * 60.00264 * 1 2 3 30 30 H 1.08993 * 109.47435 * 59.99600 * 4 2 1 31 31 H 1.09000 * 109.47433 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.46459 * 300.00147 * 4 2 1 33 33 H 1.09000 * 109.47376 * 55.00166 * 5 2 1 34 34 H 1.08996 * 109.47260 * 294.99614 * 5 2 1 35 35 H 1.09002 * 113.60824 * 25.43245 * 8 6 5 36 36 H 1.08996 * 113.61384 * 254.52922 * 8 6 5 37 37 H 0.97000 * 119.99484 * 287.49336 * 11 9 8 38 38 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 39 39 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 40 40 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 41 41 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 42 42 H 1.08000 * 120.02765 * 0.02562 * 18 17 16 43 43 H 1.09001 * 109.47482 * 60.25746 * 20 19 18 44 44 H 0.96700 * 114.00274 * 300.00656 * 21 20 19 45 45 H 1.48503 * 109.99731 * 180.02562 * 22 20 19 46 46 H 1.48501 * 109.99860 * 301.31998 * 22 20 19 47 47 H 1.07997 * 119.93789 * 179.74381 * 23 19 18 48 48 H 1.07996 * 119.97417 * 179.97438 * 24 23 19 49 49 H 1.07997 * 120.02725 * 180.02562 * 25 24 23 50 50 H 1.08997 * 113.61904 * 105.46852 * 26 6 5 51 51 H 1.09003 * 113.69439 * 334.57342 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9587 -0.6925 -1.1995 6 6 3.4835 -0.5845 -1.2639 7 1 3.8473 0.4157 -1.0285 8 6 4.2131 -1.7028 -0.5010 9 6 5.2160 -1.7357 -1.6663 10 1 5.5294 -2.7415 -1.9461 11 7 6.3431 -0.8153 -1.4967 12 6 7.5687 -1.2965 -1.2089 13 8 7.7384 -2.4914 -1.0899 14 6 8.7268 -0.3492 -1.0283 15 6 9.9920 -1.1462 -0.7046 16 8 11.0902 -0.2480 -0.5340 17 6 12.2973 -0.7984 -0.2391 18 6 13.4078 0.0145 -0.0659 19 6 14.6327 -0.5471 0.2395 20 6 15.8383 0.3360 0.4340 21 8 16.0823 1.0792 -0.7618 22 14 17.3239 -0.7184 0.8238 23 6 14.7543 -1.9188 0.3615 24 6 13.6501 -2.7318 0.1831 25 6 12.4221 -2.1749 -0.1167 26 6 4.0890 -1.1737 -2.5488 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.5954 -1.7201 1.1994 31 1 3.0487 -0.6921 1.1996 32 1 1.5953 -0.1786 2.0894 33 1 1.5241 -0.2330 -2.0872 34 1 1.6704 -1.7427 -1.1558 35 1 3.6282 -2.6173 -0.4023 36 1 4.6501 -1.3747 0.4421 37 1 6.2072 0.1404 -1.5916 38 1 8.8794 0.2174 -1.9470 39 1 8.5104 0.3373 -0.2098 40 1 9.8394 -1.7128 0.2140 41 1 10.2083 -1.8328 -1.5231 42 1 13.3140 1.0859 -0.1647 43 1 15.6550 1.0246 1.2588 44 1 16.2536 0.5294 -1.5386 45 1 18.5194 0.1407 1.0185 46 1 17.0705 -1.5203 2.0478 47 1 15.7135 -2.3561 0.5961 48 1 13.7478 -3.8031 0.2785 49 1 11.5600 -2.8103 -0.2555 50 1 4.4260 -0.4185 -3.2589 51 1 3.4713 -1.9436 -3.0111 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_4549614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:32:56 Heat of formation + Delta-G solvation = 51.276704 kcal Electronic energy + Delta-G solvation = -28268.832234 eV Core-core repulsion = 24254.486629 eV Total energy + Delta-G solvation = -4014.345605 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.29970 -41.43683 -40.92439 -39.37775 -38.94379 -37.30056 -34.64031 -33.25973 -32.49661 -30.95635 -30.05606 -29.51181 -27.12126 -26.72098 -26.16572 -25.26429 -23.75466 -23.69259 -22.29626 -21.57201 -20.61412 -19.43300 -19.09025 -18.28206 -17.89510 -17.66374 -17.55157 -17.31734 -17.15943 -17.03949 -16.73800 -16.27310 -16.03429 -15.63351 -15.40024 -15.14045 -14.94748 -14.68007 -14.46622 -14.26155 -14.18596 -13.94698 -13.75862 -13.56599 -13.52647 -13.30418 -13.25425 -13.07926 -12.97463 -12.89121 -12.73812 -12.41876 -12.15968 -12.04506 -11.87074 -11.68721 -11.66974 -11.37347 -11.15117 -10.54626 -10.16519 -9.96779 -9.32062 -5.01834 0.15250 0.34469 1.02973 1.26653 1.43211 1.60601 1.64508 1.94438 2.41601 2.62316 2.87390 2.95583 3.19911 3.34662 3.45923 3.46522 3.51092 3.61552 3.71088 3.76728 3.80478 3.84283 3.93273 4.02013 4.05071 4.17903 4.19482 4.20124 4.23128 4.32981 4.34023 4.40250 4.46448 4.51694 4.57162 4.61734 4.69851 4.70484 4.72034 4.76388 4.79094 4.84365 4.87643 4.93502 4.93848 5.02199 5.13321 5.20409 5.33518 5.40338 5.51610 5.64800 6.27670 6.38222 6.72151 7.10783 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.001609 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.981754 B =17394.896567 C =17533.591403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.368 5.368 3 H 0.439 0.561 4 C -0.057 4.057 5 C 0.008 3.992 6 C -0.117 4.117 7 H 0.132 0.868 8 C -0.151 4.151 9 C 0.089 3.911 10 H 0.068 0.932 11 N -0.697 5.697 12 C 0.523 3.477 13 O -0.583 6.583 14 C -0.134 4.134 15 C 0.070 3.930 16 O -0.323 6.323 17 C 0.119 3.881 18 C -0.140 4.140 19 C -0.084 4.084 20 C -0.073 4.073 21 O -0.555 6.555 22 Si 0.778 3.222 23 C -0.159 4.159 24 C -0.076 4.076 25 C -0.209 4.209 26 C -0.128 4.128 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.420 0.580 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.396 0.604 45 H -0.302 1.302 46 H -0.285 1.285 47 H 0.144 0.856 48 H 0.151 0.849 49 H 0.139 0.861 50 H 0.084 0.916 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.884 4.150 -0.534 41.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.055 4.945 3 H 0.276 0.724 4 C -0.200 4.200 5 C -0.114 4.114 6 C -0.135 4.135 7 H 0.150 0.850 8 C -0.190 4.190 9 C -0.016 4.016 10 H 0.086 0.914 11 N -0.349 5.349 12 C 0.310 3.690 13 O -0.463 6.463 14 C -0.173 4.173 15 C -0.006 4.006 16 O -0.238 6.238 17 C 0.074 3.926 18 C -0.159 4.159 19 C -0.085 4.085 20 C -0.183 4.183 21 O -0.363 6.363 22 Si 0.684 3.316 23 C -0.176 4.176 24 C -0.094 4.094 25 C -0.228 4.228 26 C -0.166 4.166 27 H 0.135 0.865 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.259 0.741 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.126 0.874 44 H 0.246 0.754 45 H -0.230 1.230 46 H -0.212 1.212 47 H 0.162 0.838 48 H 0.169 0.831 49 H 0.157 0.843 50 H 0.103 0.897 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -40.422 3.568 0.488 40.583 hybrid contribution -0.013 0.571 0.203 0.606 sum -40.436 4.139 0.690 40.653 Atomic orbital electron populations 1.24124 0.75528 1.09414 1.09785 1.44818 1.15945 1.19262 1.14452 0.72398 1.24267 1.05606 1.02630 0.87447 1.23928 0.95356 1.03466 0.88645 1.22992 0.92555 1.00912 0.97071 0.84998 1.23782 0.97338 1.00210 0.97649 1.22032 0.86136 0.94084 0.99355 0.91370 1.45446 1.06866 1.11346 1.71290 1.20527 0.84861 0.88452 0.75172 1.90778 1.85008 1.18483 1.52012 1.21450 0.90041 0.98497 1.07353 1.22491 0.84486 0.91824 1.01789 1.85950 1.15635 1.36901 1.85272 1.19068 0.85330 0.92042 0.96199 1.20300 0.90288 1.00159 1.05130 1.20219 0.94882 0.94395 0.98977 1.25193 1.02190 0.99745 0.91212 1.86469 1.93303 1.37133 1.19355 0.93594 0.73646 0.79331 0.85023 1.21179 0.99938 0.92571 1.03953 1.21248 0.91322 1.01294 0.95553 1.21530 1.00210 0.93609 1.07425 1.23271 0.95438 1.01639 0.96290 0.86470 0.85729 0.85409 0.86268 0.86526 0.85519 0.83304 0.84743 0.87349 0.90092 0.74137 0.85811 0.85217 0.91750 0.92033 0.85361 0.87408 0.75419 1.23007 1.21161 0.83838 0.83092 0.84316 0.89698 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.01 9.19 127.69 1.17 4.19 16 2 N -0.37 24.63 0.66 -948.86 -0.62 24.00 16 3 H 0.44 -31.14 8.40 -89.70 -0.75 -31.89 16 4 C -0.06 3.56 8.57 127.69 1.09 4.66 16 5 C 0.01 -0.50 4.57 86.30 0.39 -0.10 16 6 C -0.12 6.40 3.18 -10.27 -0.03 6.37 16 7 H 0.13 -7.71 8.09 -2.39 -0.02 -7.73 16 8 C -0.15 6.96 5.69 31.12 0.18 7.13 16 9 C 0.09 -3.22 4.32 45.52 0.20 -3.02 16 10 H 0.07 -1.80 7.46 -2.39 -0.02 -1.82 16 11 N -0.70 23.59 5.26 -440.03 -2.32 21.27 16 12 C 0.52 -12.34 7.83 87.66 0.69 -11.65 16 13 O -0.58 7.44 15.58 -3.04 -0.05 7.39 16 14 C -0.13 3.36 6.07 29.85 0.18 3.54 16 15 C 0.07 -1.15 4.03 71.98 0.29 -0.86 16 16 O -0.32 3.74 10.14 -92.44 -0.94 2.80 16 17 C 0.12 -1.07 6.69 22.51 0.15 -0.92 16 18 C -0.14 1.13 9.55 22.37 0.21 1.34 16 19 C -0.08 0.81 5.39 -19.88 -0.11 0.71 16 20 C -0.07 0.74 2.82 71.23 0.20 0.94 16 21 O -0.55 5.13 12.76 -148.98 -1.90 3.23 16 22 Si 0.78 -8.85 29.79 68.60 2.04 -6.80 16 23 C -0.16 1.84 8.67 22.28 0.19 2.04 16 24 C -0.08 0.93 10.04 22.25 0.22 1.15 16 25 C -0.21 2.27 9.04 22.37 0.20 2.47 16 26 C -0.13 5.74 7.39 31.12 0.23 5.97 16 27 H 0.12 -7.36 8.14 -2.39 -0.02 -7.38 16 28 H 0.12 -7.94 8.14 -2.39 -0.02 -7.96 16 29 H 0.13 -8.26 8.11 -2.39 -0.02 -8.28 16 30 H 0.12 -7.28 8.11 -2.39 -0.02 -7.30 16 31 H 0.12 -7.00 5.13 -2.39 -0.01 -7.01 16 32 H 0.13 -7.90 8.14 -2.38 -0.02 -7.92 16 33 H 0.15 -9.59 8.09 -2.39 -0.02 -9.61 16 34 H 0.13 -8.34 7.79 -2.39 -0.02 -8.36 16 35 H 0.11 -5.07 7.90 -2.39 -0.02 -5.09 16 36 H 0.08 -3.60 7.18 -2.39 -0.02 -3.61 16 37 H 0.42 -17.26 8.70 -92.71 -0.81 -18.07 16 38 H 0.12 -3.44 8.14 -2.38 -0.02 -3.46 16 39 H 0.13 -3.84 8.14 -2.39 -0.02 -3.86 16 40 H 0.06 -0.98 7.62 -2.38 -0.02 -1.00 16 41 H 0.06 -0.88 7.62 -2.39 -0.02 -0.90 16 42 H 0.13 -1.00 8.06 -2.91 -0.02 -1.02 16 43 H 0.11 -0.97 7.96 -2.39 -0.02 -0.99 16 44 H 0.40 -6.81 8.70 -74.06 -0.64 -7.46 16 45 H -0.30 0.98 7.11 99.48 0.71 1.69 16 46 H -0.28 1.97 7.11 99.48 0.71 2.68 16 47 H 0.14 -2.19 4.87 -2.91 -0.01 -2.20 16 48 H 0.15 -2.52 8.06 -2.91 -0.02 -2.54 16 49 H 0.14 -1.84 6.30 -2.91 -0.02 -1.85 16 50 H 0.08 -3.65 8.14 -2.39 -0.02 -3.67 16 51 H 0.11 -4.94 8.10 -2.39 -0.02 -4.96 16 Total: 1.00 -86.20 402.56 0.46 -85.74 By element: Atomic # 1 Polarization: -160.35 SS G_CDS: -1.22 Total: -161.58 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 5.47 Total: 23.94 kcal Atomic # 7 Polarization: 48.22 SS G_CDS: -2.94 Total: 45.28 kcal Atomic # 8 Polarization: 16.31 SS G_CDS: -2.89 Total: 13.42 kcal Atomic # 14 Polarization: -8.85 SS G_CDS: 2.04 Total: -6.80 kcal Total: -86.20 0.46 -85.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_4549614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.018 kcal (2) G-P(sol) polarization free energy of solvation -86.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds