Wall clock time and date at job start Sun Mar 7 2021 06:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37633 * 125.67961 * 2 1 4 4 C 1.46676 * 126.22433 * 0.02562 * 3 2 1 5 5 O 1.21688 * 120.00276 * 4.61749 * 4 3 2 6 6 N 1.34780 * 119.99628 * 184.61861 * 4 3 2 7 7 C 1.46498 * 119.99600 * 175.11915 * 6 4 3 8 8 H 1.09000 * 112.85152 * 336.19607 * 7 6 4 9 9 C 1.53791 * 113.61368 * 107.50035 * 7 6 4 10 10 C 1.53787 * 87.07856 * 89.11516 * 9 7 6 11 11 H 1.09000 * 113.61497 * 270.88563 * 10 9 7 12 12 C 1.53002 * 113.61364 * 139.97939 * 10 9 7 13 13 N 1.46899 * 109.46672 * 87.50293 * 12 10 9 14 14 H 1.00897 * 109.47616 * 304.99986 * 13 12 10 15 15 C 1.46896 * 109.47293 * 65.00439 * 13 12 10 16 16 C 1.46905 * 109.46919 * 185.00112 * 13 12 10 17 17 C 1.53782 * 113.61501 * 204.99788 * 7 6 4 18 18 C 1.37889 * 107.55052 * 179.75841 * 3 2 1 19 19 C 1.39876 * 107.09139 * 0.23542 * 18 3 2 20 20 Br 1.89096 * 126.07503 * 179.97438 * 19 18 3 21 21 C 1.35510 * 107.85554 * 0.02562 * 19 18 3 22 22 C 1.50693 * 125.57404 * 179.97438 * 21 19 18 23 23 O 1.42901 * 109.47069 * 55.26566 * 22 21 19 24 24 Si 1.86297 * 109.47352 * 295.26482 * 22 21 19 25 25 H 1.09007 * 109.46641 * 84.17186 * 1 2 3 26 26 H 1.08996 * 109.47246 * 204.17317 * 1 2 3 27 27 H 1.09004 * 109.46626 * 324.17876 * 1 2 3 28 28 H 0.96994 * 120.00251 * 355.11750 * 6 4 3 29 29 H 1.08993 * 113.61159 * 203.66363 * 9 7 6 30 30 H 1.08999 * 113.61367 * 334.56970 * 9 7 6 31 31 H 1.08999 * 109.47119 * 207.50108 * 12 10 9 32 32 H 1.08999 * 109.47163 * 327.50449 * 12 10 9 33 33 H 1.08996 * 109.47388 * 59.99420 * 15 13 12 34 34 H 1.08998 * 109.47383 * 179.97438 * 15 13 12 35 35 H 1.09007 * 109.47017 * 299.99725 * 15 13 12 36 36 H 1.08999 * 109.47319 * 60.00106 * 16 13 12 37 37 H 1.08998 * 109.47269 * 180.02562 * 16 13 12 38 38 H 1.09005 * 109.47042 * 299.99976 * 16 13 12 39 39 H 1.08997 * 113.61473 * 25.43331 * 17 7 6 40 40 H 1.09000 * 113.61431 * 156.33828 * 17 7 6 41 41 H 1.08001 * 126.45252 * 180.27949 * 18 3 2 42 42 H 1.09000 * 109.46945 * 175.25987 * 22 21 19 43 43 H 0.96702 * 114.00062 * 180.02562 * 23 22 21 44 44 H 1.48497 * 109.99870 * 307.03429 * 24 22 21 45 45 H 1.48500 * 109.99988 * 68.35022 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1180 0.0000 4 6 1.8122 2.5122 0.0005 5 8 0.6248 2.7643 0.0859 6 7 2.7088 3.5141 -0.0935 7 6 2.2488 4.9009 -0.2008 8 1 1.2381 4.9819 -0.6006 9 6 2.4758 5.7258 1.0772 10 6 3.8581 6.0839 0.5062 11 1 4.6402 5.3755 0.7793 12 6 4.2624 7.5397 0.7475 13 7 4.9284 7.6531 2.0519 14 1 4.3273 7.2782 2.7703 15 6 6.1888 6.8991 2.0253 16 6 5.2094 9.0666 2.3370 17 6 3.2598 5.8338 -0.8882 18 6 3.5782 0.6889 0.0055 19 6 3.5529 -0.7096 0.0034 20 35 5.0608 -1.8506 0.0082 21 6 2.2558 -1.1017 -0.0038 22 6 1.7712 -2.5286 -0.0089 23 8 2.3394 -3.2285 1.0998 24 14 2.2893 -3.3547 -1.5963 25 1 -0.3633 0.1044 -1.0224 26 1 -0.3633 -0.9375 0.4208 27 1 -0.3633 0.8333 0.6015 28 1 3.6585 3.3170 -0.0902 29 1 1.8065 6.5810 1.1693 30 1 2.5209 5.1226 1.9840 31 1 4.9453 7.8621 -0.0385 32 1 3.3733 8.1701 0.7375 33 1 6.8382 7.3041 1.2493 34 1 6.6833 6.9836 2.9930 35 1 5.9804 5.8503 1.8138 36 1 4.2742 9.6261 2.3567 37 1 5.7040 9.1507 3.3046 38 1 5.8588 9.4716 1.5609 39 1 3.9378 5.3178 -1.5680 40 1 2.8048 6.7187 -1.3333 41 1 4.4583 1.3148 0.0113 42 1 0.6842 -2.5434 0.0705 43 1 2.0707 -4.1555 1.1593 44 1 1.8484 -2.5428 -2.7588 45 1 3.7647 -3.5218 -1.6239 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_5000100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:33:58 Heat of formation + Delta-G solvation = 124.043321 kcal Electronic energy + Delta-G solvation = -26379.196855 eV Core-core repulsion = 22565.208685 eV Total energy + Delta-G solvation = -3813.988170 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.98253 -42.19971 -40.75829 -39.05609 -37.71655 -35.17533 -34.25883 -32.32029 -31.07260 -30.10422 -29.39994 -27.50088 -27.19655 -26.87924 -25.74033 -23.97417 -23.31415 -21.81679 -20.68877 -20.27996 -19.36987 -18.92894 -18.52115 -17.78114 -17.57445 -17.19636 -17.02286 -16.78152 -16.16472 -15.76688 -15.63632 -15.32426 -14.94236 -14.89045 -14.66361 -14.44454 -14.09207 -14.00144 -13.78993 -13.76375 -13.56962 -13.49536 -13.31856 -13.25688 -13.14950 -12.87900 -12.86910 -12.46343 -12.06787 -11.84946 -11.74545 -11.39789 -11.38584 -10.92294 -10.66155 -10.31304 -9.92591 -9.36671 -5.04653 0.00846 0.54392 0.85380 1.01611 1.14034 1.49291 1.61603 1.99028 2.01840 2.12160 2.89264 2.94925 3.10027 3.15130 3.37386 3.40574 3.41174 3.59001 3.67783 3.72509 3.75140 3.87073 3.89895 4.09050 4.16501 4.17546 4.24120 4.25568 4.35231 4.42439 4.48662 4.51525 4.53939 4.63805 4.71240 4.73324 4.78937 4.82048 4.86507 4.91681 4.99799 5.09968 5.16782 5.42692 5.48531 5.66520 6.24881 6.78301 6.92563 Molecular weight = 373.09amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.002715 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.446221 B =10310.053690 C =11620.953728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.401 5.401 3 C -0.053 4.053 4 C 0.595 3.405 5 O -0.572 6.572 6 N -0.685 5.685 7 C 0.094 3.906 8 H 0.075 0.925 9 C -0.150 4.150 10 C -0.123 4.123 11 H 0.129 0.871 12 C 0.009 3.991 13 N -0.372 5.372 14 H 0.435 0.565 15 C -0.055 4.055 16 C -0.046 4.046 17 C -0.125 4.125 18 C -0.104 4.104 19 C -0.184 4.184 20 Br -0.015 7.015 21 C 0.075 3.925 22 C -0.052 4.052 23 O -0.547 6.547 24 Si 0.748 3.252 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.418 0.582 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.189 0.811 42 H 0.097 0.903 43 H 0.408 0.592 44 H -0.307 1.307 45 H -0.247 1.247 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.121 29.129 7.636 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.075 5.075 3 C -0.167 4.167 4 C 0.382 3.618 5 O -0.453 6.453 6 N -0.336 5.336 7 C -0.011 4.011 8 H 0.093 0.907 9 C -0.188 4.188 10 C -0.141 4.141 11 H 0.147 0.853 12 C -0.113 4.113 13 N 0.052 4.948 14 H 0.272 0.728 15 C -0.198 4.198 16 C -0.188 4.188 17 C -0.164 4.164 18 C -0.131 4.131 19 C -0.269 4.269 20 Br 0.069 6.931 21 C -0.046 4.046 22 C -0.162 4.162 23 O -0.357 6.357 24 Si 0.650 3.350 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.256 0.744 29 H 0.132 0.868 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.206 0.794 42 H 0.115 0.885 43 H 0.260 0.740 44 H -0.235 1.235 45 H -0.171 1.171 Dipole moment (debyes) X Y Z Total from point charges 8.351 29.686 6.889 31.599 hybrid contribution -0.533 0.064 0.312 0.621 sum 7.818 29.750 7.201 31.592 Atomic orbital electron populations 1.22528 0.74197 1.06420 1.05087 1.43972 1.07882 1.04100 1.51501 1.20281 0.90055 0.88125 1.18230 1.16841 0.85562 0.83504 0.75851 1.90839 1.17760 1.84985 1.51698 1.45123 1.09728 1.05124 1.73671 1.22086 0.99719 0.79444 0.99830 0.90709 1.23678 0.97198 1.00768 0.97165 1.23097 0.97648 0.96073 0.97324 0.85309 1.23923 1.03390 0.98955 0.85027 1.44809 1.16798 1.16322 1.16910 0.72825 1.24211 0.85022 1.00696 1.09826 1.24132 1.08443 0.78095 1.08167 1.23299 0.97148 0.99644 0.96285 1.21538 0.95772 0.92447 1.03302 1.21073 0.91673 0.95443 1.18741 1.96680 1.34857 1.63567 1.98009 1.20079 0.89614 0.89158 1.05750 1.24210 1.01274 0.88555 1.02121 1.86474 1.73226 1.29583 1.46439 0.95021 0.82172 0.86782 0.71041 0.89577 0.87232 0.88208 0.74397 0.86798 0.90635 0.83779 0.83924 0.85774 0.85657 0.86056 0.85734 0.85775 0.86037 0.89717 0.86552 0.79410 0.88505 0.73969 1.23482 1.17139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.92 10.26 127.77 1.31 0.39 16 2 N -0.40 5.02 3.16 -519.60 -1.64 3.38 16 3 C -0.05 0.81 6.89 40.35 0.28 1.09 16 4 C 0.59 -10.85 7.77 86.45 0.67 -10.17 16 5 O -0.57 6.13 14.41 -4.31 -0.06 6.07 16 6 N -0.68 20.45 5.25 -443.99 -2.33 18.12 16 7 C 0.09 -3.24 4.29 45.52 0.20 -3.05 16 8 H 0.07 -1.95 7.52 -2.39 -0.02 -1.96 16 9 C -0.15 6.63 7.43 31.13 0.23 6.86 16 10 C -0.12 6.56 3.45 -10.26 -0.04 6.53 16 11 H 0.13 -7.24 6.10 -2.39 -0.01 -7.26 16 12 C 0.01 -0.55 4.48 86.30 0.39 -0.16 16 13 N -0.37 24.50 0.66 -948.84 -0.62 23.87 16 14 H 0.44 -29.61 8.44 -89.70 -0.76 -30.37 16 15 C -0.06 3.51 8.98 127.69 1.15 4.65 16 16 C -0.05 2.96 9.19 127.69 1.17 4.14 16 17 C -0.13 5.50 7.39 31.12 0.23 5.73 16 18 C -0.10 1.82 10.34 22.58 0.23 2.05 16 19 C -0.18 2.08 6.11 22.04 0.13 2.22 16 20 Br -0.02 0.15 30.56 -20.37 -0.62 -0.47 16 21 C 0.08 -0.84 5.32 41.34 0.22 -0.62 16 22 C -0.05 0.80 2.74 71.23 0.20 0.99 16 23 O -0.55 8.33 12.22 -148.98 -1.82 6.51 16 24 Si 0.75 -10.95 31.39 68.60 2.15 -8.79 16 25 H 0.09 -1.41 8.14 -2.38 -0.02 -1.43 16 26 H 0.11 -2.19 6.68 -2.39 -0.02 -2.20 16 27 H 0.10 -1.39 6.56 -2.38 -0.02 -1.41 16 28 H 0.42 -15.12 7.60 -92.71 -0.70 -15.82 16 29 H 0.11 -5.25 7.90 -2.39 -0.02 -5.27 16 30 H 0.07 -3.12 8.14 -2.39 -0.02 -3.14 16 31 H 0.14 -9.05 8.09 -2.39 -0.02 -9.07 16 32 H 0.14 -8.92 7.79 -2.39 -0.02 -8.94 16 33 H 0.12 -7.78 8.11 -2.39 -0.02 -7.80 16 34 H 0.12 -7.83 8.14 -2.39 -0.02 -7.85 16 35 H 0.12 -7.58 6.10 -2.38 -0.01 -7.60 16 36 H 0.12 -7.87 8.11 -2.39 -0.02 -7.89 16 37 H 0.12 -7.79 8.14 -2.39 -0.02 -7.81 16 38 H 0.12 -7.63 8.14 -2.38 -0.02 -7.65 16 39 H 0.08 -3.54 8.14 -2.39 -0.02 -3.55 16 40 H 0.12 -5.22 8.10 -2.39 -0.02 -5.24 16 41 H 0.19 -5.00 7.45 -2.91 -0.02 -5.02 16 42 H 0.10 -1.95 6.33 -2.39 -0.02 -1.96 16 43 H 0.41 -10.09 8.74 -74.06 -0.65 -10.74 16 44 H -0.31 2.10 7.11 99.48 0.71 2.81 16 45 H -0.25 2.35 5.91 99.48 0.59 2.94 16 Total: 1.00 -85.17 373.76 0.26 -84.91 By element: Atomic # 1 Polarization: -153.09 SS G_CDS: -1.16 Total: -154.25 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.37 Total: 20.65 kcal Atomic # 7 Polarization: 49.97 SS G_CDS: -4.60 Total: 45.37 kcal Atomic # 8 Polarization: 14.46 SS G_CDS: -1.88 Total: 12.58 kcal Atomic # 14 Polarization: -10.95 SS G_CDS: 2.15 Total: -8.79 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -0.62 Total: -0.47 kcal Total: -85.17 0.26 -84.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_5000100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.956 kcal (2) G-P(sol) polarization free energy of solvation -85.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds