Wall clock time and date at job start Sun Mar 7 2021 06:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 116.99695 * 2 1 4 4 C 1.39150 * 120.07135 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07700 * 0.02562 * 4 3 2 6 6 C 1.42899 * 117.00323 * 179.72282 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 H 1.08993 * 112.85549 * 334.66568 * 10 9 7 12 12 C 1.53788 * 113.61630 * 105.86295 * 10 9 7 13 13 C 1.54049 * 86.98422 * 89.15607 * 12 10 9 14 14 H 1.08997 * 113.61507 * 270.88629 * 13 12 10 15 15 C 1.53006 * 113.61565 * 139.98272 * 13 12 10 16 16 N 1.46899 * 109.47520 * 87.50111 * 15 13 12 17 17 H 1.00909 * 109.46669 * 54.99978 * 16 15 13 18 18 C 1.46896 * 109.47301 * 174.99954 * 16 15 13 19 19 C 1.46895 * 109.47193 * 295.00312 * 16 15 13 20 20 C 1.53781 * 87.07776 * 25.43522 * 13 12 10 21 21 C 1.38562 * 119.85396 * 179.73127 * 4 3 2 22 22 C 1.38250 * 119.99637 * 0.27483 * 21 4 3 23 23 C 1.38247 * 120.14852 * 0.02562 * 22 21 4 24 24 C 1.50694 * 119.92788 * 180.02562 * 23 22 21 25 25 O 1.42903 * 109.46889 * 244.99704 * 24 23 22 26 26 Si 1.86299 * 109.47345 * 4.99476 * 24 23 22 27 27 C 1.38249 * 120.14422 * 359.97438 * 23 22 21 28 28 H 1.08993 * 109.47320 * 299.99285 * 1 2 3 29 29 H 1.09002 * 109.47278 * 59.99837 * 1 2 3 30 30 H 1.09001 * 109.46450 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46798 * 59.99577 * 6 5 4 32 32 H 1.08998 * 109.46844 * 300.00081 * 6 5 4 33 33 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 34 34 H 1.08999 * 113.61546 * 203.66819 * 12 10 9 35 35 H 1.09001 * 113.61168 * 334.56317 * 12 10 9 36 36 H 1.08995 * 109.46904 * 207.50927 * 15 13 12 37 37 H 1.09001 * 109.46791 * 327.50183 * 15 13 12 38 38 H 1.09001 * 109.47078 * 60.00362 * 18 16 15 39 39 H 1.09004 * 109.47046 * 180.02562 * 18 16 15 40 40 H 1.09005 * 109.47021 * 300.00310 * 18 16 15 41 41 H 1.09008 * 109.47414 * 59.99861 * 19 16 15 42 42 H 1.09004 * 109.46798 * 179.97438 * 19 16 15 43 43 H 1.09001 * 109.47112 * 299.99593 * 19 16 15 44 44 H 1.08997 * 113.61197 * 220.02044 * 20 13 12 45 45 H 1.09004 * 113.61560 * 89.11668 * 20 13 12 46 46 H 1.07997 * 120.00577 * 180.30506 * 21 4 3 47 47 H 1.07999 * 119.92172 * 180.02562 * 22 21 4 48 48 H 1.09004 * 109.47334 * 124.99966 * 24 23 22 49 49 H 0.96705 * 113.99925 * 179.97438 * 25 24 23 50 50 H 1.48496 * 110.00233 * 178.68265 * 26 24 23 51 51 H 1.48500 * 110.00130 * 300.00698 * 26 24 23 52 52 H 1.08000 * 119.99571 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2865 0.0005 5 8 4.1796 0.1479 0.0005 6 6 5.6003 0.3009 -0.0051 7 6 6.2519 -1.0579 -0.0035 8 8 5.5671 -2.0589 0.0023 9 7 7.5958 -1.1608 -0.0025 10 6 8.2292 -2.4817 0.0051 11 1 7.5935 -3.2536 0.4389 12 6 8.8434 -2.8782 -1.3480 13 6 10.1383 -2.1955 -0.8681 14 1 10.1889 -1.1345 -1.1124 15 6 11.4099 -2.9559 -1.2500 16 7 11.8502 -2.5338 -2.5864 17 1 11.9608 -1.5309 -2.6029 18 6 13.1340 -3.1732 -2.9037 19 6 10.8456 -2.9320 -3.5814 20 6 9.6608 -2.4752 0.5667 21 6 4.0602 2.5234 -0.0051 22 6 3.3027 3.6800 -0.0055 23 6 1.9222 3.6058 0.0003 24 6 1.1014 4.8696 -0.0008 25 8 0.3693 4.9630 1.2229 26 14 2.2299 6.3430 -0.1633 27 6 1.2931 2.3748 0.0059 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 5.9098 0.8529 0.8825 32 1 5.9032 0.8485 -0.8975 33 1 8.1435 -0.3602 -0.0068 34 1 8.9420 -3.9552 -1.4839 35 1 8.3776 -2.3839 -2.2005 36 1 12.1939 -2.7404 -0.5242 37 1 11.2050 -4.0264 -1.2563 38 1 13.0145 -4.2565 -2.8859 39 1 13.4609 -2.8596 -3.8952 40 1 13.8795 -2.8777 -2.1653 41 1 9.8929 -2.4574 -3.3460 42 1 11.1722 -2.6183 -4.5730 43 1 10.7261 -4.0153 -3.5636 44 1 9.8545 -1.6558 1.2589 45 1 9.9826 -3.4423 0.9533 46 1 5.1384 2.5842 -0.0097 47 1 3.7906 4.6435 -0.0103 48 1 0.4058 4.8504 -0.8398 49 1 -0.1823 5.7544 1.2918 50 1 1.4304 7.5938 -0.1975 51 1 3.1833 6.3805 0.9747 52 1 0.2145 2.3196 0.0100 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_60476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:34:02 Heat of formation + Delta-G solvation = 27.874467 kcal Electronic energy + Delta-G solvation = -31177.016426 eV Core-core repulsion = 26842.973832 eV Total energy + Delta-G solvation = -4334.042594 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.28189 -41.81261 -40.96009 -39.65477 -38.97562 -38.68466 -37.15899 -34.65330 -32.19982 -31.51755 -30.54087 -29.51143 -29.18036 -28.47950 -26.69921 -26.25022 -25.75776 -24.02109 -23.49555 -22.55696 -21.88161 -20.64223 -19.77886 -19.06633 -18.67155 -18.40551 -18.26566 -17.86271 -17.56861 -17.49632 -17.24883 -16.82534 -16.67416 -16.13899 -15.94820 -15.75133 -15.70412 -15.58012 -15.11860 -14.90906 -14.45297 -14.11118 -14.06163 -14.04122 -13.75563 -13.62204 -13.54030 -13.53447 -13.46758 -13.27909 -13.04361 -12.83020 -12.73330 -12.61763 -12.25996 -12.20886 -12.14052 -11.96720 -11.72518 -11.68892 -11.35252 -11.06241 -10.53157 -10.18544 -9.81544 -8.95223 -4.94141 0.13171 0.24076 1.05771 1.28873 1.38279 1.45090 1.61723 1.95354 2.26349 2.47988 2.52759 2.89656 2.98124 3.22064 3.34698 3.36165 3.46845 3.51711 3.67800 3.74843 3.79270 3.85750 3.87951 4.02181 4.04798 4.09466 4.13579 4.20551 4.22703 4.23766 4.26323 4.30101 4.35988 4.42665 4.44666 4.53897 4.59144 4.62464 4.72023 4.73330 4.78711 4.80355 4.86081 4.90137 4.95732 4.96328 5.03967 5.06782 5.13897 5.36977 5.49895 5.54881 5.92699 6.36087 6.49826 6.54016 7.12276 Molecular weight = 352.20amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.001942 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.754030 B =14417.994968 C =15550.055276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.075 3.925 4 C 0.088 3.912 5 O -0.315 6.315 6 C 0.028 3.972 7 C 0.514 3.486 8 O -0.573 6.573 9 N -0.690 5.690 10 C 0.089 3.911 11 H 0.062 0.938 12 C -0.153 4.153 13 C -0.114 4.114 14 H 0.137 0.863 15 C 0.008 3.992 16 N -0.367 5.367 17 H 0.440 0.560 18 C -0.046 4.046 19 C -0.057 4.057 20 C -0.125 4.125 21 C -0.155 4.155 22 C -0.113 4.113 23 C -0.081 4.081 24 C -0.093 4.093 25 O -0.561 6.561 26 Si 0.779 3.221 27 C -0.156 4.156 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.424 0.576 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.151 0.849 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.184 0.816 47 H 0.156 0.844 48 H 0.090 0.910 49 H 0.394 0.606 50 H -0.296 1.296 51 H -0.288 1.288 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.534 -9.058 -13.368 39.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.030 3.970 4 C 0.043 3.957 5 O -0.229 6.229 6 C -0.050 4.050 7 C 0.300 3.700 8 O -0.451 6.451 9 N -0.345 5.345 10 C -0.016 4.016 11 H 0.080 0.920 12 C -0.191 4.191 13 C -0.133 4.133 14 H 0.155 0.845 15 C -0.114 4.114 16 N 0.056 4.944 17 H 0.277 0.723 18 C -0.188 4.188 19 C -0.200 4.200 20 C -0.164 4.164 21 C -0.173 4.173 22 C -0.131 4.131 23 C -0.082 4.082 24 C -0.200 4.200 25 O -0.372 6.372 26 Si 0.684 3.316 27 C -0.175 4.175 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.263 0.737 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.107 0.893 45 H 0.127 0.873 46 H 0.201 0.799 47 H 0.173 0.827 48 H 0.108 0.892 49 H 0.245 0.755 50 H -0.224 1.224 51 H -0.215 1.215 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 36.609 -10.280 -12.901 40.154 hybrid contribution -1.973 0.769 1.082 2.378 sum 34.636 -9.511 -11.819 37.812 Atomic orbital electron populations 1.23271 0.76929 1.05219 1.01978 1.86172 1.22851 1.26519 1.89115 1.18664 0.90206 0.85401 1.02720 1.18469 0.87918 0.86572 1.02774 1.86223 1.18535 1.28749 1.89345 1.22875 0.79281 0.95689 1.07107 1.20510 0.83530 0.90405 0.75523 1.90812 1.64371 1.40241 1.49683 1.45242 1.04434 1.09937 1.74862 1.22038 0.94962 0.84731 0.99872 0.91998 1.23841 0.95984 1.02655 0.96613 1.23050 0.91695 1.02003 0.96530 0.84490 1.23924 0.99998 1.04453 0.83070 1.44806 1.15188 1.20152 1.14247 0.72263 1.24121 0.83261 1.03312 1.08146 1.24268 0.94246 1.07160 0.94309 1.23261 0.91491 1.05040 0.96579 1.21354 1.02322 0.88895 1.04732 1.21020 0.92199 0.99436 1.00438 1.19251 0.94092 0.93134 1.01684 1.25157 1.01352 1.04441 0.89089 1.86550 1.63229 1.48766 1.38609 0.94148 0.78745 0.72129 0.86548 1.21030 1.00535 0.90810 1.05084 0.92410 0.91474 0.86964 0.86044 0.84753 0.73734 0.87542 0.89997 0.83161 0.84926 0.86607 0.85694 0.85378 0.86479 0.85421 0.86455 0.89290 0.87283 0.79896 0.82698 0.89218 0.75526 1.22403 1.21518 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.19 9.81 113.37 1.11 0.92 16 2 O -0.33 0.62 10.28 -79.71 -0.82 -0.20 16 3 C 0.08 -0.36 6.70 22.57 0.15 -0.21 16 4 C 0.09 -0.83 6.70 22.57 0.15 -0.67 16 5 O -0.31 2.76 9.45 -67.09 -0.63 2.13 16 6 C 0.03 -0.64 5.22 71.24 0.37 -0.27 16 7 C 0.51 -10.31 7.91 87.66 0.69 -9.62 16 8 O -0.57 3.28 16.12 16.00 0.26 3.53 16 9 N -0.69 22.80 5.26 -440.03 -2.32 20.48 16 10 C 0.09 -3.10 4.30 45.52 0.20 -2.91 16 11 H 0.06 -1.48 7.50 -2.39 -0.02 -1.50 16 12 C -0.15 6.88 5.71 31.21 0.18 7.05 16 13 C -0.11 6.29 3.19 -10.17 -0.03 6.26 16 14 H 0.14 -8.17 8.10 -2.39 -0.02 -8.19 16 15 C 0.01 -0.47 4.57 86.31 0.39 -0.08 16 16 N -0.37 24.68 0.66 -948.84 -0.62 24.06 16 17 H 0.44 -31.56 8.41 -89.69 -0.75 -32.31 16 18 C -0.05 3.01 9.19 127.69 1.17 4.19 16 19 C -0.06 3.58 8.57 127.69 1.09 4.68 16 20 C -0.13 5.60 7.38 31.12 0.23 5.83 16 21 C -0.15 2.67 9.04 22.35 0.20 2.87 16 22 C -0.11 1.71 8.66 22.27 0.19 1.90 16 23 C -0.08 0.83 5.38 -19.86 -0.11 0.73 16 24 C -0.09 1.16 2.79 71.23 0.20 1.36 16 25 O -0.56 4.84 12.81 -148.98 -1.91 2.93 16 26 Si 0.78 -12.12 29.84 68.60 2.05 -10.07 16 27 C -0.16 1.12 8.67 22.35 0.19 1.31 16 28 H 0.06 -0.57 7.65 -2.39 -0.02 -0.59 16 29 H 0.07 -0.80 7.68 -2.39 -0.02 -0.82 16 30 H 0.11 -1.35 8.14 -2.39 -0.02 -1.37 16 31 H 0.12 -3.50 7.66 -2.38 -0.02 -3.52 16 32 H 0.13 -4.27 7.66 -2.39 -0.02 -4.29 16 33 H 0.42 -17.89 8.70 -92.71 -0.81 -18.70 16 34 H 0.11 -4.84 7.90 -2.39 -0.02 -4.86 16 35 H 0.08 -3.57 7.19 -2.39 -0.02 -3.59 16 36 H 0.15 -9.74 8.09 -2.39 -0.02 -9.76 16 37 H 0.13 -8.19 7.79 -2.39 -0.02 -8.21 16 38 H 0.12 -7.26 8.14 -2.39 -0.02 -7.28 16 39 H 0.12 -8.00 8.14 -2.39 -0.02 -8.02 16 40 H 0.13 -8.32 8.11 -2.38 -0.02 -8.34 16 41 H 0.12 -7.03 5.14 -2.38 -0.01 -7.04 16 42 H 0.13 -7.99 8.14 -2.39 -0.02 -8.01 16 43 H 0.12 -7.12 8.11 -2.39 -0.02 -7.14 16 44 H 0.09 -3.88 8.14 -2.39 -0.02 -3.90 16 45 H 0.11 -4.85 8.10 -2.39 -0.02 -4.87 16 46 H 0.18 -5.08 6.30 -2.91 -0.02 -5.10 16 47 H 0.16 -3.12 4.85 -2.91 -0.01 -3.14 16 48 H 0.09 -1.40 7.96 -2.39 -0.02 -1.42 16 49 H 0.39 -6.35 8.74 -74.05 -0.65 -7.00 16 50 H -0.30 2.84 7.11 99.48 0.71 3.55 16 51 H -0.29 2.89 7.05 99.48 0.70 3.59 16 52 H 0.14 -1.14 6.30 -2.91 -0.02 -1.16 16 Total: 1.00 -97.92 411.04 1.17 -96.75 By element: Atomic # 1 Polarization: -161.73 SS G_CDS: -1.22 Total: -162.95 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.39 Total: 23.34 kcal Atomic # 7 Polarization: 47.48 SS G_CDS: -2.94 Total: 44.54 kcal Atomic # 8 Polarization: 11.50 SS G_CDS: -3.10 Total: 8.40 kcal Atomic # 14 Polarization: -12.12 SS G_CDS: 2.05 Total: -10.07 kcal Total: -97.92 1.17 -96.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_60476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.621 kcal (2) G-P(sol) polarization free energy of solvation -97.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds