Wall clock time and date at job start Sun Mar 7 2021 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35973 * 116.99640 * 2 1 4 4 C 1.39449 * 120.11675 * 179.97438 * 3 2 1 5 5 O 1.34767 * 133.24757 * 0.02562 * 4 3 2 6 6 C 1.34932 * 110.84651 * 180.02562 * 5 4 3 7 7 C 1.46992 * 125.14361 * 180.02562 * 6 5 4 8 8 O 1.21651 * 119.99973 * 179.97438 * 7 6 5 9 9 N 1.34771 * 119.99823 * 359.97404 * 7 6 5 10 10 C 1.46501 * 119.99891 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.84933 * 23.80150 * 10 9 7 12 12 C 1.53782 * 113.61627 * 154.99590 * 10 9 7 13 13 C 1.53786 * 87.07870 * 89.11667 * 12 10 9 14 14 H 1.09004 * 113.61220 * 270.79831 * 13 12 10 15 15 C 1.52999 * 113.61276 * 139.98399 * 13 12 10 16 16 N 1.46900 * 109.47135 * 174.99900 * 15 13 12 17 17 H 1.00900 * 109.47240 * 54.99756 * 16 15 13 18 18 C 1.46893 * 109.47253 * 174.99868 * 16 15 13 19 19 C 1.46904 * 109.47110 * 294.99833 * 16 15 13 20 20 C 1.53775 * 113.61442 * 252.49538 * 10 9 7 21 21 C 1.35816 * 109.71640 * 359.97438 * 6 5 4 22 22 C 1.40615 * 119.13178 * 180.02562 * 4 3 2 23 23 C 1.39772 * 120.11966 * 0.24303 * 22 4 3 24 24 C 1.50706 * 120.09445 * 179.97438 * 23 22 4 25 25 O 1.42898 * 109.47044 * 284.99892 * 24 23 22 26 26 Si 1.86302 * 109.47143 * 164.99504 * 24 23 22 27 27 C 1.36633 * 119.81510 * 359.51431 * 23 22 4 28 28 C 1.38253 * 120.11949 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47642 * 60.00041 * 1 2 3 30 30 H 1.09001 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47587 * 299.99658 * 1 2 3 32 32 H 0.97001 * 120.00186 * 359.97438 * 9 7 6 33 33 H 1.09000 * 113.61972 * 203.66111 * 12 10 9 34 34 H 1.09003 * 113.61747 * 334.48661 * 12 10 9 35 35 H 1.09000 * 109.46986 * 295.00007 * 15 13 12 36 36 H 1.08999 * 109.47245 * 54.99908 * 15 13 12 37 37 H 1.09004 * 109.47271 * 60.00309 * 18 16 15 38 38 H 1.08998 * 109.47012 * 179.97438 * 18 16 15 39 39 H 1.08996 * 109.47560 * 300.00185 * 18 16 15 40 40 H 1.08996 * 109.47121 * 299.99956 * 19 16 15 41 41 H 1.09003 * 109.46772 * 60.00068 * 19 16 15 42 42 H 1.08998 * 109.47317 * 179.97438 * 19 16 15 43 43 H 1.09000 * 113.61556 * 25.43139 * 20 10 9 44 44 H 1.09002 * 113.61795 * 156.33593 * 20 10 9 45 45 H 1.07995 * 126.95550 * 180.02562 * 21 6 5 46 46 H 1.08998 * 109.46533 * 45.00174 * 24 23 22 47 47 H 0.96707 * 113.99289 * 179.97438 * 25 24 23 48 48 H 1.48500 * 109.99994 * 298.68510 * 26 24 23 49 49 H 1.48502 * 109.99867 * 60.00355 * 26 24 23 50 50 H 1.07998 * 119.75231 * 180.23651 * 27 23 22 51 51 H 1.08003 * 119.66496 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4386 1.2875 0.0005 5 8 4.4140 0.3575 0.0007 6 6 5.6317 0.9389 0.0018 7 6 6.9131 0.2188 0.0018 8 8 7.9595 0.8392 0.0024 9 7 6.9287 -1.1289 0.0010 10 6 8.2058 -1.8466 0.0015 11 1 9.0248 -1.2530 0.4078 12 6 8.1169 -3.2620 0.5962 13 6 7.7812 -3.7518 -0.8224 14 1 6.7148 -3.7400 -1.0475 15 6 8.4508 -5.0782 -1.1872 16 7 7.9772 -5.5195 -2.5059 17 1 8.1373 -4.7885 -3.1827 18 6 8.7075 -6.7285 -2.9092 19 6 6.5401 -5.8159 -2.4360 20 6 8.5362 -2.5171 -1.3424 21 6 5.4943 2.2901 0.0019 22 6 4.0552 2.5512 0.0011 23 6 3.2763 3.7117 0.0062 24 6 3.9378 5.0658 0.0074 25 8 4.4642 5.3377 1.3078 26 14 2.6846 6.3696 -0.4405 27 6 1.9134 3.6152 0.0006 28 6 1.2955 2.3726 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 6.0943 -1.6236 0.0009 33 1 9.0678 -3.6375 0.9741 34 1 7.3000 -3.3864 1.3071 35 1 9.5321 -4.9436 -1.2159 36 1 8.1980 -5.8304 -0.4400 37 1 8.5345 -7.5183 -2.1781 38 1 8.3557 -7.0562 -3.8874 39 1 9.7738 -6.5087 -2.9610 40 1 6.3671 -6.6056 -1.7049 41 1 5.9982 -4.9187 -2.1368 42 1 6.1885 -6.1429 -3.4146 43 1 8.0570 -2.0405 -2.1976 44 1 9.6018 -2.6889 -1.4944 45 1 6.2872 3.0233 0.0024 46 1 4.7479 5.0749 -0.7218 47 1 4.9056 6.1949 1.3820 48 1 2.1530 6.1161 -1.8037 49 1 1.5747 6.3673 0.5461 50 1 1.3125 4.5126 0.0007 51 1 0.2172 2.3119 0.0005 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_6672420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:34:21 Heat of formation + Delta-G solvation = 71.655470 kcal Electronic energy + Delta-G solvation = -32809.102620 eV Core-core repulsion = 28376.043850 eV Total energy + Delta-G solvation = -4433.058770 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.185 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.91638 -42.26080 -41.17679 -40.64888 -39.20359 -39.08758 -37.17200 -34.81330 -33.81769 -32.18568 -31.30805 -30.12191 -29.41125 -28.67819 -26.90405 -26.50612 -26.06933 -25.19503 -24.21994 -23.63444 -22.24879 -21.82470 -20.56005 -20.04335 -19.31165 -19.02843 -18.59118 -18.49023 -17.87084 -17.75980 -17.42626 -17.20851 -17.05154 -16.74186 -16.45525 -16.10718 -16.00933 -15.52545 -15.32962 -15.15206 -14.82588 -14.65465 -14.39006 -14.25861 -14.08636 -14.05545 -13.78660 -13.59763 -13.51031 -13.49505 -13.27032 -13.25553 -13.15994 -12.90478 -12.65885 -12.48647 -12.20393 -12.13393 -11.98967 -11.79990 -11.69402 -11.40460 -11.17332 -10.41690 -10.36338 -10.01201 -9.19121 -4.97266 -0.83699 -0.13434 0.45178 0.98392 1.01167 1.23520 1.60426 1.72816 1.77165 1.88977 1.95219 2.17197 2.88101 2.94357 3.01961 3.14020 3.25653 3.36518 3.37403 3.39039 3.57467 3.63643 3.68624 3.72992 3.81975 3.85828 3.90944 3.98912 4.15285 4.17030 4.25416 4.27272 4.27467 4.28576 4.34004 4.41488 4.48483 4.60459 4.63118 4.64795 4.67300 4.69426 4.72779 4.76086 4.80181 4.85481 4.86534 4.88707 4.98018 5.01450 5.05344 5.10675 5.33872 5.43456 6.00798 6.13555 6.73282 6.83065 Molecular weight = 362.18amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.002403 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.106258 B =11649.507218 C =13226.234344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.144 3.856 4 C 0.030 3.970 5 O -0.170 6.170 6 C -0.032 4.032 7 C 0.609 3.391 8 O -0.540 6.540 9 N -0.685 5.685 10 C 0.087 3.913 11 H 0.083 0.917 12 C -0.125 4.125 13 C -0.125 4.125 14 H 0.124 0.876 15 C 0.010 3.990 16 N -0.373 5.373 17 H 0.436 0.564 18 C -0.046 4.046 19 C -0.055 4.055 20 C -0.148 4.148 21 C -0.110 4.110 22 C -0.098 4.098 23 C -0.070 4.070 24 C -0.079 4.079 25 O -0.563 6.563 26 Si 0.771 3.229 27 C -0.109 4.109 28 C -0.173 4.173 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.419 0.581 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.177 0.823 46 H 0.089 0.911 47 H 0.404 0.596 48 H -0.285 1.285 49 H -0.286 1.286 50 H 0.138 0.862 51 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.924 -28.574 -10.869 32.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.097 3.903 4 C -0.018 4.018 5 O -0.072 6.072 6 C -0.082 4.082 7 C 0.394 3.606 8 O -0.419 6.419 9 N -0.336 5.336 10 C -0.018 4.018 11 H 0.101 0.899 12 C -0.164 4.164 13 C -0.144 4.144 14 H 0.142 0.858 15 C -0.112 4.112 16 N 0.051 4.949 17 H 0.272 0.728 18 C -0.188 4.188 19 C -0.197 4.197 20 C -0.186 4.186 21 C -0.131 4.131 22 C -0.100 4.100 23 C -0.070 4.070 24 C -0.189 4.189 25 O -0.373 6.373 26 Si 0.675 3.325 27 C -0.126 4.126 28 C -0.192 4.192 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.086 0.914 32 H 0.256 0.744 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.095 0.905 44 H 0.138 0.862 45 H 0.195 0.805 46 H 0.107 0.893 47 H 0.255 0.745 48 H -0.211 1.211 49 H -0.213 1.213 50 H 0.155 0.845 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 10.611 -29.303 -10.791 32.981 hybrid contribution -0.652 0.318 0.084 0.731 sum 9.958 -28.985 -10.707 32.465 Atomic orbital electron populations 1.23493 0.75389 1.06374 1.02787 1.86110 1.24094 1.25025 1.88357 1.17768 0.86325 0.86471 0.99697 1.18956 0.87962 0.87055 1.07833 1.83967 1.12442 1.34339 1.76487 1.22080 0.84252 0.92574 1.09271 1.16495 0.84271 0.83242 0.76614 1.90931 1.31236 1.68371 1.51332 1.45444 1.11012 1.04168 1.72969 1.22219 0.85217 0.94023 1.00324 0.89913 1.23304 1.05094 0.91643 0.96335 1.23090 1.01866 0.92284 0.97122 0.85785 1.23925 1.04490 0.98603 0.84208 1.44812 1.15503 1.17907 1.16643 0.72792 1.24135 1.01123 0.86741 1.06801 1.24197 0.77797 1.07950 1.09774 1.23689 1.03001 0.95566 0.96346 1.22890 0.94577 0.95163 1.00468 1.19595 0.93227 0.92410 1.04725 1.18848 0.92735 0.93487 1.01971 1.24827 1.06029 0.98631 0.89380 1.86460 1.78158 1.43884 1.28771 0.93993 0.77170 0.85081 0.76218 1.20675 0.93675 0.98298 0.99982 1.21265 1.01775 0.89836 1.06288 0.91024 0.85636 0.91427 0.74380 0.86090 0.90065 0.83598 0.83804 0.86056 0.85756 0.85592 0.85767 0.86389 0.85564 0.90510 0.86176 0.80513 0.89292 0.74491 1.21139 1.21334 0.84526 0.80960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.27 9.81 113.37 1.11 0.84 16 2 O -0.32 4.24 10.50 -93.24 -0.98 3.26 16 3 C 0.14 -1.47 6.70 22.57 0.15 -1.32 16 4 C 0.03 -0.25 7.35 23.14 0.17 -0.08 16 5 O -0.17 2.06 10.28 -13.36 -0.14 1.93 16 6 C -0.03 0.39 7.07 24.00 0.17 0.56 16 7 C 0.61 -9.71 7.80 86.54 0.67 -9.04 16 8 O -0.54 4.69 16.42 -4.19 -0.07 4.62 16 9 N -0.69 18.59 5.26 -443.73 -2.33 16.25 16 10 C 0.09 -2.87 4.32 45.52 0.20 -2.67 16 11 H 0.08 -2.12 7.46 -2.39 -0.02 -2.14 16 12 C -0.13 5.33 7.39 31.12 0.23 5.56 16 13 C -0.13 6.51 3.45 -10.27 -0.04 6.47 16 14 H 0.12 -6.69 6.10 -2.38 -0.01 -6.70 16 15 C 0.01 -0.58 4.48 86.30 0.39 -0.20 16 16 N -0.37 24.29 0.66 -948.87 -0.62 23.66 16 17 H 0.44 -29.42 8.44 -89.69 -0.76 -30.18 16 18 C -0.05 2.93 9.19 127.69 1.17 4.11 16 19 C -0.05 3.42 8.98 127.69 1.15 4.57 16 20 C -0.15 6.45 7.43 31.12 0.23 6.68 16 21 C -0.11 1.04 10.68 23.79 0.25 1.29 16 22 C -0.10 0.73 6.16 -20.24 -0.12 0.60 16 23 C -0.07 0.54 5.30 -19.87 -0.11 0.44 16 24 C -0.08 0.98 2.70 71.24 0.19 1.17 16 25 O -0.56 6.50 12.86 -148.98 -1.92 4.59 16 26 Si 0.77 -11.03 30.19 68.60 2.07 -8.96 16 27 C -0.11 0.97 8.62 22.02 0.19 1.16 16 28 C -0.17 2.04 9.03 22.40 0.20 2.24 16 29 H 0.07 -1.59 7.66 -2.39 -0.02 -1.61 16 30 H 0.13 -3.06 8.14 -2.39 -0.02 -3.08 16 31 H 0.07 -1.43 7.66 -2.39 -0.02 -1.45 16 32 H 0.42 -13.22 8.42 -92.71 -0.78 -14.00 16 33 H 0.12 -5.36 8.10 -2.39 -0.02 -5.38 16 34 H 0.08 -3.22 8.14 -2.39 -0.02 -3.24 16 35 H 0.15 -9.11 7.79 -2.39 -0.02 -9.13 16 36 H 0.14 -8.93 8.09 -2.39 -0.02 -8.95 16 37 H 0.12 -7.59 8.14 -2.39 -0.02 -7.61 16 38 H 0.12 -7.79 8.14 -2.39 -0.02 -7.80 16 39 H 0.13 -7.96 8.11 -2.39 -0.02 -7.98 16 40 H 0.12 -7.67 8.11 -2.39 -0.02 -7.69 16 41 H 0.12 -7.17 6.10 -2.39 -0.01 -7.19 16 42 H 0.13 -7.81 8.14 -2.39 -0.02 -7.83 16 43 H 0.08 -3.14 8.14 -2.39 -0.02 -3.16 16 44 H 0.12 -5.56 7.90 -2.39 -0.02 -5.58 16 45 H 0.18 -1.93 8.06 -2.91 -0.02 -1.96 16 46 H 0.09 -1.40 7.96 -2.39 -0.02 -1.42 16 47 H 0.40 -8.75 8.74 -74.05 -0.65 -9.40 16 48 H -0.28 2.62 7.11 99.48 0.71 3.32 16 49 H -0.29 2.33 6.76 99.48 0.67 3.01 16 50 H 0.14 -1.41 4.84 -2.91 -0.01 -1.42 16 51 H 0.17 -3.06 6.26 -2.91 -0.02 -3.08 16 Total: 1.00 -84.93 411.14 1.03 -83.90 By element: Atomic # 1 Polarization: -150.44 SS G_CDS: -1.19 Total: -151.64 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 6.21 Total: 22.39 kcal Atomic # 7 Polarization: 42.87 SS G_CDS: -2.96 Total: 39.92 kcal Atomic # 8 Polarization: 17.49 SS G_CDS: -3.10 Total: 14.39 kcal Atomic # 14 Polarization: -11.03 SS G_CDS: 2.07 Total: -8.96 kcal Total: -84.93 1.03 -83.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_6672420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.557 kcal (2) G-P(sol) polarization free energy of solvation -84.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds