Wall clock time and date at job start Sun Mar 7 2021 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33814 * 122.44995 * 2 1 4 4 C 1.50703 * 124.52206 * 359.94225 * 3 2 1 5 5 O 1.42905 * 109.47264 * 330.00001 * 4 3 2 6 6 Si 1.86299 * 109.47187 * 210.00143 * 4 3 2 7 7 S 1.70609 * 110.95823 * 180.20937 * 3 2 1 8 8 C 1.75833 * 91.56148 * 359.70412 * 7 3 2 9 9 C 1.46584 * 125.45978 * 180.09437 * 8 7 3 10 10 O 1.21702 * 120.00343 * 180.23143 * 9 8 7 11 11 N 1.34775 * 120.00212 * 0.23237 * 9 8 7 12 12 C 1.46496 * 120.00323 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.84912 * 25.33646 * 12 11 9 14 14 C 1.53782 * 113.61620 * 156.52494 * 12 11 9 15 15 C 1.53781 * 87.08009 * 89.11551 * 14 12 11 16 16 H 1.09002 * 113.62083 * 270.80093 * 15 14 12 17 17 C 1.52998 * 113.61262 * 139.98012 * 15 14 12 18 18 N 1.46900 * 109.47314 * 175.00375 * 17 15 14 19 19 H 1.00903 * 109.47074 * 304.99986 * 18 17 15 20 20 C 1.46904 * 109.47044 * 64.99989 * 18 17 15 21 21 C 1.46901 * 109.47583 * 185.00313 * 18 17 15 22 22 C 1.53775 * 113.61817 * 254.13444 * 12 11 9 23 23 C 1.36644 * 109.08255 * 0.29085 * 8 7 3 24 24 H 1.08996 * 109.47153 * 89.99817 * 1 2 3 25 25 H 1.08997 * 109.47305 * 209.99771 * 1 2 3 26 26 H 1.09001 * 109.47363 * 330.00051 * 1 2 3 27 27 H 1.09004 * 109.47113 * 89.99999 * 4 3 2 28 28 H 0.96702 * 113.99404 * 300.00033 * 5 4 3 29 29 H 1.48493 * 110.00018 * 58.68120 * 6 4 3 30 30 H 1.48504 * 109.99873 * 180.02562 * 6 4 3 31 31 H 0.97009 * 120.00023 * 359.97438 * 11 9 8 32 32 H 1.09000 * 113.61951 * 203.66579 * 14 12 11 33 33 H 1.09002 * 113.61343 * 334.48854 * 14 12 11 34 34 H 1.09003 * 109.47329 * 295.00609 * 17 15 14 35 35 H 1.08998 * 109.47354 * 55.00674 * 17 15 14 36 36 H 1.08995 * 109.47304 * 60.00115 * 20 18 17 37 37 H 1.09003 * 109.46694 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.47076 * 300.00007 * 20 18 17 39 39 H 1.08992 * 109.47380 * 59.99460 * 21 18 17 40 40 H 1.08993 * 109.47130 * 180.02562 * 21 18 17 41 41 H 1.09003 * 109.46636 * 300.00125 * 21 18 17 42 42 H 1.09010 * 113.61156 * 25.43247 * 22 12 11 43 43 H 1.09001 * 113.61547 * 156.33268 * 22 12 11 44 44 H 1.08004 * 123.35385 * 179.79644 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 -0.0013 5 8 0.3759 2.4978 -0.6760 6 14 2.7932 3.6822 -0.8792 7 16 3.8969 0.7893 -0.0058 8 6 3.5937 -0.9427 0.0008 9 6 4.6231 -1.9862 0.0018 10 8 4.3002 -3.1596 0.0023 11 7 5.9273 -1.6463 0.0021 12 6 6.9561 -2.6891 0.0036 13 1 6.6073 -3.6284 -0.4255 14 6 8.3091 -2.2206 -0.5574 15 6 8.6659 -1.7919 0.8757 16 1 8.3692 -0.7702 1.1126 17 6 10.1147 -2.0948 1.2632 18 7 10.3902 -1.5441 2.5969 19 1 10.1685 -0.5598 2.6068 20 6 9.5673 -2.2415 3.5942 21 6 11.8115 -1.7290 2.9191 22 6 7.6623 -2.8559 1.3594 23 6 2.2446 -1.1600 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.4925 2.8511 1.0262 28 1 0.4275 2.2088 -1.5974 29 1 3.0214 3.2189 -2.2714 30 1 2.2235 5.0536 -0.8867 31 1 6.1848 -0.7110 0.0013 32 1 8.9291 -3.0326 -0.9374 33 1 8.2273 -1.3879 -1.2560 34 1 10.2693 -3.1737 1.2765 35 1 10.7879 -1.6402 0.5364 36 1 9.8068 -3.3048 3.5835 37 1 9.7714 -1.8326 4.5838 38 1 8.5127 -2.1042 3.3552 39 1 12.4221 -1.2117 2.1792 40 1 12.0157 -1.3209 3.9089 41 1 12.0510 -2.7924 2.9084 42 1 7.0588 -2.5348 2.2085 43 1 8.1057 -3.8413 1.5025 44 1 1.8019 -2.1452 0.0008 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608396_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:34:26 Heat of formation + Delta-G solvation = 95.306814 kcal Electronic energy + Delta-G solvation = -23903.460317 eV Core-core repulsion = 20454.396058 eV Total energy + Delta-G solvation = -3449.064259 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.25918 -41.07117 -40.06246 -39.01057 -37.46415 -34.68291 -32.20866 -30.31467 -30.13224 -29.47036 -26.91881 -26.65705 -25.64696 -24.60698 -23.64000 -22.09019 -20.75360 -20.14355 -19.53084 -19.01541 -17.93870 -17.75989 -17.40014 -17.25048 -16.87969 -16.57191 -16.17534 -16.04192 -15.55811 -15.17764 -14.97443 -14.60845 -14.51414 -14.06661 -13.95611 -13.73846 -13.55728 -13.53285 -13.51109 -13.26209 -13.17492 -13.07519 -13.01272 -12.72741 -12.47862 -12.31395 -12.12573 -11.91697 -11.69452 -11.35404 -11.34613 -10.93736 -10.27727 -9.70669 -9.39157 -5.21073 -0.72327 0.27206 0.63811 1.02108 1.07692 1.26931 1.51556 1.88935 1.90126 2.00659 2.91260 2.99682 3.18615 3.23371 3.36574 3.48727 3.51572 3.64924 3.78230 3.80487 4.04674 4.05707 4.21813 4.23956 4.24319 4.37530 4.44200 4.44635 4.51683 4.55094 4.69511 4.74092 4.74632 4.76525 4.81014 4.84111 4.88595 4.91705 4.93412 4.95504 5.04410 5.13090 5.34356 5.36716 5.48762 6.28205 6.30607 6.99207 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.003398 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.173683 B = 8238.816260 C = 9070.121274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.111 4.111 3 C -0.241 4.241 4 C -0.045 4.045 5 O -0.533 6.533 6 Si 0.752 3.248 7 S 0.292 5.708 8 C -0.288 4.288 9 C 0.593 3.407 10 O -0.572 6.572 11 N -0.694 5.694 12 C 0.088 3.912 13 H 0.070 0.930 14 C -0.126 4.126 15 C -0.119 4.119 16 H 0.134 0.866 17 C 0.009 3.991 18 N -0.367 5.367 19 H 0.440 0.560 20 C -0.058 4.058 21 C -0.046 4.046 22 C -0.152 4.152 23 C -0.066 4.066 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.141 0.859 28 H 0.387 0.613 29 H -0.274 1.274 30 H -0.286 1.286 31 H 0.414 0.586 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.817 -1.063 10.918 32.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.361 4.361 4 C -0.155 4.155 5 O -0.342 6.342 6 Si 0.654 3.346 7 S 0.562 5.438 8 C -0.408 4.408 9 C 0.380 3.620 10 O -0.453 6.453 11 N -0.346 5.346 12 C -0.017 4.017 13 H 0.088 0.912 14 C -0.164 4.164 15 C -0.137 4.137 16 H 0.152 0.848 17 C -0.113 4.113 18 N 0.056 4.944 19 H 0.277 0.723 20 C -0.200 4.200 21 C -0.188 4.188 22 C -0.190 4.190 23 C -0.100 4.100 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.158 0.842 28 H 0.237 0.763 29 H -0.200 1.200 30 H -0.212 1.212 31 H 0.252 0.748 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.099 0.901 43 H 0.130 0.870 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 31.927 -0.498 10.821 33.715 hybrid contribution -3.125 -1.038 -0.984 3.437 sum 28.802 -1.536 9.837 30.474 Atomic orbital electron populations 1.20606 0.89075 1.03009 1.02775 1.18707 0.98521 0.90959 1.04191 1.24657 1.00388 1.00525 1.10532 1.24788 0.91154 0.95039 1.04499 1.86646 1.28407 1.89180 1.29933 0.95019 0.82532 0.76179 0.80895 1.81882 1.00511 0.94550 1.66904 1.24691 0.97451 0.99191 1.19440 1.17103 0.82901 0.86658 0.75339 1.90868 1.82452 1.20342 1.51654 1.45332 1.03750 1.10788 1.74698 1.22113 0.88038 0.91403 1.00145 0.91160 1.23285 0.93377 1.03248 0.96537 1.23070 0.92564 1.01415 0.96647 0.84810 1.23915 0.98604 1.05608 0.83152 1.44809 1.15591 1.19758 1.14255 0.72266 1.24269 0.99032 1.02476 0.94228 1.24119 0.77678 1.08963 1.08067 1.23853 0.97687 1.01038 0.96422 1.20713 0.92042 0.99798 0.97486 0.91046 0.92176 0.90180 0.84192 0.76295 1.20006 1.21226 0.74804 0.86757 0.89455 0.84723 0.83107 0.86319 0.85480 0.86559 0.85363 0.85755 0.86552 0.90117 0.87009 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.35 8.67 71.24 0.62 1.97 16 2 C -0.11 1.66 5.75 -21.05 -0.12 1.54 16 3 C -0.24 4.62 5.54 24.68 0.14 4.76 16 4 C -0.04 0.87 2.76 71.24 0.20 1.07 16 5 O -0.53 8.14 9.86 -148.98 -1.47 6.67 16 6 Si 0.75 -15.73 31.30 68.60 2.15 -13.58 16 7 S 0.29 -7.54 19.78 -56.49 -1.12 -8.66 16 8 C -0.29 5.23 6.45 24.08 0.16 5.39 16 9 C 0.59 -10.65 7.78 86.42 0.67 -9.98 16 10 O -0.57 4.29 16.46 -4.35 -0.07 4.21 16 11 N -0.69 20.91 5.26 -444.11 -2.34 18.58 16 12 C 0.09 -3.02 4.29 45.52 0.20 -2.83 16 13 H 0.07 -1.76 7.50 -2.39 -0.02 -1.77 16 14 C -0.13 5.61 7.38 31.12 0.23 5.84 16 15 C -0.12 6.46 3.20 -10.18 -0.03 6.43 16 16 H 0.13 -7.82 8.09 -2.39 -0.02 -7.84 16 17 C 0.01 -0.57 4.57 86.30 0.39 -0.18 16 18 N -0.37 24.71 0.66 -948.85 -0.62 24.09 16 19 H 0.44 -31.51 8.40 -89.69 -0.75 -32.26 16 20 C -0.06 3.60 8.57 127.69 1.09 4.69 16 21 C -0.05 3.01 9.19 127.69 1.17 4.19 16 22 C -0.15 6.82 5.71 31.21 0.18 7.00 16 23 C -0.07 0.89 9.80 21.72 0.21 1.11 16 24 H 0.07 -1.04 8.14 -2.39 -0.02 -1.06 16 25 H 0.06 -0.80 8.13 -2.39 -0.02 -0.82 16 26 H 0.08 -1.02 6.42 -2.39 -0.02 -1.04 16 27 H 0.14 -3.04 7.96 -2.38 -0.02 -3.06 16 28 H 0.39 -7.58 8.66 -74.06 -0.64 -8.22 16 29 H -0.27 4.44 7.11 99.48 0.71 5.14 16 30 H -0.29 3.51 7.11 99.48 0.71 4.21 16 31 H 0.41 -15.37 7.82 -92.70 -0.72 -16.09 16 32 H 0.11 -5.16 8.10 -2.39 -0.02 -5.18 16 33 H 0.09 -3.75 8.14 -2.39 -0.02 -3.77 16 34 H 0.13 -8.39 7.79 -2.39 -0.02 -8.41 16 35 H 0.15 -9.81 8.09 -2.39 -0.02 -9.83 16 36 H 0.12 -7.24 8.11 -2.39 -0.02 -7.26 16 37 H 0.13 -7.95 8.14 -2.39 -0.02 -7.97 16 38 H 0.12 -6.96 5.13 -2.39 -0.01 -6.97 16 39 H 0.13 -8.35 8.11 -2.39 -0.02 -8.37 16 40 H 0.12 -7.96 8.14 -2.39 -0.02 -7.98 16 41 H 0.12 -7.33 8.14 -2.39 -0.02 -7.35 16 42 H 0.08 -3.48 7.19 -2.38 -0.02 -3.50 16 43 H 0.11 -5.18 7.90 -2.39 -0.02 -5.20 16 44 H 0.14 -1.48 8.06 -2.91 -0.02 -1.50 16 Total: 1.00 -84.38 359.39 0.57 -83.80 By element: Atomic # 1 Polarization: -145.04 SS G_CDS: -1.06 Total: -146.10 kcal Atomic # 6 Polarization: 25.88 SS G_CDS: 5.10 Total: 30.98 kcal Atomic # 7 Polarization: 45.62 SS G_CDS: -2.96 Total: 42.66 kcal Atomic # 8 Polarization: 12.43 SS G_CDS: -1.54 Total: 10.89 kcal Atomic # 14 Polarization: -15.73 SS G_CDS: 2.15 Total: -13.58 kcal Atomic # 16 Polarization: -7.54 SS G_CDS: -1.12 Total: -8.66 kcal Total: -84.38 0.57 -83.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608396_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.110 kcal (2) G-P(sol) polarization free energy of solvation -84.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds