Wall clock time and date at job start Sun Mar 7 2021 08:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.47005 * 2 1 4 4 C 1.35893 * 117.00354 * 276.36948 * 3 2 1 5 5 C 1.38735 * 120.05783 * 1.09694 * 4 3 2 6 6 C 1.38143 * 119.94646 * 179.74470 * 5 4 3 7 7 C 1.38273 * 120.05211 * 0.49790 * 6 5 4 8 8 C 1.50699 * 119.94227 * 179.74568 * 7 6 5 9 9 O 1.42901 * 109.47317 * 245.02677 * 8 7 6 10 10 Si 1.86303 * 109.47016 * 5.02730 * 8 7 6 11 11 H 1.48502 * 109.47066 * 60.00012 * 10 8 7 12 12 H 1.48502 * 109.46894 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47321 * 299.99639 * 10 8 7 14 14 C 1.38259 * 120.11451 * 359.77939 * 7 6 5 15 15 C 1.38146 * 120.05559 * 359.96748 * 14 7 6 16 16 C 1.50696 * 109.47203 * 120.00784 * 2 1 3 17 17 O 1.21285 * 119.99488 * 244.99847 * 16 2 1 18 18 N 1.34772 * 120.00352 * 64.99638 * 16 2 1 19 19 N 1.36598 * 120.00200 * 185.12635 * 18 16 2 20 20 C 1.46352 * 111.00185 * 110.72294 * 19 18 16 21 21 C 1.52619 * 111.89115 * 203.19310 * 20 19 18 22 22 C 1.53924 * 109.31540 * 283.48000 * 21 20 19 23 23 Si 1.87525 * 106.84980 * 57.20665 * 22 21 20 24 24 C 1.86295 * 110.00503 * 196.90331 * 23 22 21 25 25 C 1.86299 * 110.00316 * 75.49987 * 23 22 21 26 26 C 1.47728 * 110.99843 * 235.07708 * 19 18 16 27 27 H 1.09004 * 109.47330 * 59.99075 * 1 2 3 28 28 H 1.08995 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46481 * 299.99824 * 1 2 3 30 30 H 1.09005 * 109.46485 * 240.00732 * 2 1 3 31 31 H 1.07996 * 120.02539 * 359.97438 * 5 4 3 32 32 H 1.07993 * 119.97289 * 180.22688 * 6 5 4 33 33 H 1.08997 * 109.47321 * 125.02473 * 8 7 6 34 34 H 0.96703 * 114.00181 * 60.00258 * 9 8 7 35 35 H 1.07998 * 119.97691 * 179.97438 * 14 7 6 36 36 H 1.08006 * 120.03122 * 179.97438 * 15 14 7 37 37 H 0.96998 * 119.99942 * 5.12689 * 18 16 2 38 38 H 1.08991 * 109.00073 * 323.82206 * 20 19 18 39 39 H 1.09003 * 108.99423 * 82.57980 * 20 19 18 40 40 H 1.09005 * 109.49588 * 163.52948 * 21 20 19 41 41 H 1.09000 * 109.52656 * 43.45257 * 21 20 19 42 42 H 1.09004 * 109.98104 * 297.86952 * 22 21 20 43 43 H 1.09004 * 110.05543 * 176.57896 * 22 21 20 44 44 H 1.08994 * 109.47452 * 177.27252 * 24 23 22 45 45 H 1.09001 * 109.47063 * 297.27004 * 24 23 22 46 46 H 1.08998 * 109.47125 * 57.26502 * 24 23 22 47 47 H 1.09004 * 109.47035 * 302.73253 * 25 23 22 48 48 H 1.09007 * 109.47137 * 62.72814 * 25 23 22 49 49 H 1.08996 * 109.47287 * 182.73178 * 25 23 22 50 50 H 1.08990 * 109.94494 * 294.88537 * 26 19 18 51 51 H 1.08999 * 109.94563 * 56.05283 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0854 1.9738 -1.2033 5 6 1.6907 1.3134 -2.3578 6 6 1.7670 1.9544 -3.5792 7 6 2.2460 3.2494 -3.6529 8 6 2.3336 3.9441 -4.9873 9 8 3.7039 4.1996 -5.3024 10 14 1.5859 2.8579 -6.3032 11 1 0.1619 2.5925 -5.9758 12 1 1.6716 3.5428 -7.6181 13 1 2.3275 1.5728 -6.3647 14 6 2.6454 3.9077 -2.5045 15 6 2.5661 3.2730 -1.2801 16 6 2.0324 -0.7106 1.2303 17 8 2.6531 -0.0981 2.0733 18 7 1.7920 -2.0265 1.3939 19 7 2.1547 -2.6479 2.5550 20 6 0.9770 -3.0333 3.3338 21 6 1.3024 -3.1929 4.8163 22 6 2.0383 -4.5269 5.0354 23 14 3.5637 -4.4916 3.9451 24 6 4.2397 -6.2153 3.7389 25 6 4.8586 -3.3829 4.6966 26 6 3.0232 -3.8117 2.2836 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.3206 0.3004 -2.3012 32 1 1.4565 1.4420 -4.4777 33 1 1.7893 4.8874 -4.9423 34 1 4.2495 3.4032 -5.3590 35 1 3.0195 4.9190 -2.5647 36 1 2.8786 3.7875 -0.3833 37 1 1.3613 -2.5324 0.6872 38 1 0.2098 -2.2677 3.2192 39 1 0.5926 -3.9789 2.9512 40 1 0.3781 -3.1881 5.3942 41 1 1.9383 -2.3690 5.1405 42 1 1.3949 -5.3587 4.7487 43 1 2.3302 -4.6255 6.0810 44 1 5.0963 -6.1915 3.0655 45 1 4.5511 -6.6020 4.7093 46 1 3.4671 -6.8610 3.3214 47 1 4.4455 -2.3838 4.8353 48 1 5.1664 -3.7859 5.6616 49 1 5.7216 -3.3303 4.0329 50 1 2.4666 -4.5709 1.7344 51 1 3.8939 -3.4994 1.7071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_10157680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:23:30 Heat of formation + Delta-G solvation = -74.719563 kcal Electronic energy + Delta-G solvation = -29225.322419 eV Core-core repulsion = 25250.037461 eV Total energy + Delta-G solvation = -3975.284958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.83823 -40.83267 -39.36479 -38.33661 -37.12783 -35.07086 -33.59121 -32.08756 -31.68991 -30.94024 -29.32767 -28.35711 -27.55501 -26.73293 -25.82444 -24.63120 -23.85425 -22.45879 -21.83928 -21.47583 -19.60251 -19.02637 -18.14600 -17.97747 -17.02415 -17.00714 -16.60262 -16.46805 -16.05902 -15.70954 -15.53435 -15.30715 -15.03879 -14.82832 -14.70893 -14.54481 -14.39496 -14.14837 -13.97303 -13.81047 -13.70816 -13.52756 -13.49932 -13.33227 -13.19721 -13.11976 -12.97083 -12.89841 -12.28775 -12.17360 -12.05781 -12.03936 -12.00276 -11.96813 -11.53960 -11.28418 -10.82672 -10.75066 -10.42721 -10.36037 -10.23773 -10.06341 -9.65053 -9.24261 0.24916 0.27628 1.14580 1.21050 1.43921 1.47695 1.54334 1.76104 1.89338 1.94276 2.01239 2.39295 2.61634 2.63131 3.23455 3.51811 3.58327 3.63606 3.68893 3.77674 3.86857 3.92746 4.01948 4.15912 4.24853 4.34490 4.41704 4.52033 4.53434 4.58782 4.62172 4.67987 4.71996 4.73506 4.79391 4.80881 4.84503 4.85863 4.91719 4.94177 5.04463 5.09172 5.16020 5.22387 5.30075 5.47306 5.47936 5.58626 5.65534 5.67990 5.80005 6.15069 6.19985 6.40770 6.73445 7.43510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 O -0.312 6.312 4 C 0.122 3.878 5 C -0.205 4.205 6 C -0.087 4.087 7 C -0.160 4.160 8 C -0.078 4.078 9 O -0.555 6.555 10 Si 0.984 3.016 11 H -0.254 1.254 12 H -0.279 1.279 13 H -0.248 1.248 14 C -0.054 4.054 15 C -0.165 4.165 16 C 0.530 3.470 17 O -0.549 6.549 18 N -0.569 5.569 19 N -0.304 5.304 20 C 0.026 3.974 21 C -0.105 4.105 22 C -0.414 4.414 23 Si 1.095 2.905 24 C -0.453 4.453 25 C -0.468 4.468 26 C -0.269 4.269 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.128 0.872 31 H 0.158 0.842 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.388 0.612 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.398 0.602 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -7.823 -3.250 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 O -0.225 6.225 4 C 0.076 3.924 5 C -0.223 4.223 6 C -0.105 4.105 7 C -0.161 4.161 8 C -0.188 4.188 9 O -0.362 6.362 10 Si 0.808 3.192 11 H -0.178 1.178 12 H -0.205 1.205 13 H -0.172 1.172 14 C -0.072 4.072 15 C -0.184 4.184 16 C 0.316 3.684 17 O -0.423 6.423 18 N -0.315 5.315 19 N -0.120 5.120 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.500 4.500 23 Si 1.284 2.716 24 C -0.562 4.562 25 C -0.574 4.574 26 C -0.441 4.441 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.175 0.825 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.237 0.763 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.239 0.761 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.939 -6.832 -2.860 8.389 hybrid contribution -0.110 -0.704 -0.220 0.746 sum -4.049 -7.536 -3.081 9.093 Atomic orbital electron populations 1.22352 0.90402 1.05578 1.04472 1.22339 0.97111 0.82239 0.97480 1.86196 1.81249 1.26762 1.28300 1.19238 0.96089 0.92774 0.84258 1.21423 1.07110 1.02219 0.91549 1.21073 0.97455 0.94033 0.97926 1.20373 1.03812 0.95374 0.96513 1.25018 0.88173 1.07581 0.98032 1.86489 1.19489 1.37531 1.92723 0.85214 0.79747 0.77852 0.76404 1.17790 1.20484 1.17156 1.20957 0.95783 1.00149 0.90277 1.20669 1.04874 0.93416 0.99421 1.20441 0.79019 0.81553 0.87436 1.90731 1.39715 1.66499 1.45371 1.45254 1.62684 1.08156 1.15395 1.62923 1.16505 1.27489 1.05118 1.22602 0.91565 1.01061 0.94906 1.21207 1.01505 0.97948 0.93687 1.26445 1.14176 0.98949 1.10431 0.78248 0.65762 0.64657 0.62941 1.26139 1.07024 1.17754 1.05270 1.26391 1.13052 1.10635 1.07291 1.28237 1.00454 0.95157 1.20216 0.89327 0.87454 0.92181 0.85482 0.82450 0.84144 0.86084 0.76291 0.84119 0.85365 0.76105 0.90943 0.91538 0.90305 0.92266 0.89228 0.89900 0.91085 0.90550 0.90218 0.92659 0.91015 0.91979 0.90525 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.84 9.15 71.98 0.66 1.50 16 2 C 0.07 0.02 2.65 29.85 0.08 0.10 16 3 O -0.31 -2.49 9.34 -73.36 -0.69 -3.18 16 4 C 0.12 0.60 6.58 22.51 0.15 0.75 16 5 C -0.20 0.10 8.25 22.37 0.18 0.28 16 6 C -0.09 0.08 8.66 22.26 0.19 0.28 16 7 C -0.16 -0.10 5.35 -19.85 -0.11 -0.21 16 8 C -0.08 0.10 2.80 71.24 0.20 0.30 16 9 O -0.56 -0.32 12.83 -148.98 -1.91 -2.24 16 10 Si 0.98 -2.51 25.13 68.60 1.72 -0.78 16 11 H -0.25 0.52 7.11 99.48 0.71 1.23 16 12 H -0.28 -0.46 7.11 99.48 0.71 0.25 16 13 H -0.25 0.85 7.04 99.48 0.70 1.55 16 14 C -0.05 -0.15 9.68 22.25 0.22 0.06 16 15 C -0.17 -0.92 9.99 22.37 0.22 -0.69 16 16 C 0.53 3.30 7.28 87.66 0.64 3.94 16 17 O -0.55 -9.94 16.84 15.94 0.27 -9.68 16 18 N -0.57 0.23 4.67 -173.54 -0.81 -0.58 16 19 N -0.30 -0.42 4.15 -334.17 -1.39 -1.81 16 20 C 0.03 -0.05 5.38 86.28 0.46 0.42 16 21 C -0.10 0.13 5.74 30.78 0.18 0.31 16 22 C -0.41 1.95 5.04 72.29 0.36 2.32 16 23 Si 1.10 -5.74 11.99 68.60 0.82 -4.92 16 24 C -0.45 2.69 8.65 113.37 0.98 3.67 16 25 C -0.47 -0.67 8.65 113.37 0.98 0.31 16 26 C -0.27 0.84 4.85 127.53 0.62 1.46 16 27 H 0.09 -0.56 7.07 -2.39 -0.02 -0.58 16 28 H 0.11 -1.18 8.10 -2.39 -0.02 -1.20 16 29 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.13 -0.79 6.17 -2.38 -0.01 -0.80 16 31 H 0.16 -1.06 5.54 -2.91 -0.02 -1.08 16 32 H 0.14 -0.69 4.86 -2.91 -0.01 -0.71 16 33 H 0.12 -0.32 7.96 -2.39 -0.02 -0.33 16 34 H 0.39 -2.23 8.70 -74.06 -0.64 -2.87 16 35 H 0.14 0.13 8.06 -2.91 -0.02 0.10 16 36 H 0.13 0.76 8.06 -2.91 -0.02 0.73 16 37 H 0.40 -3.24 8.79 -215.50 -1.89 -5.13 16 38 H 0.07 -0.04 8.03 -2.39 -0.02 -0.06 16 39 H 0.07 -0.41 7.78 -2.39 -0.02 -0.43 16 40 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 41 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 42 H 0.09 -0.64 7.99 -2.39 -0.02 -0.66 16 43 H 0.08 -0.39 7.99 -2.38 -0.02 -0.41 16 44 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 45 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 46 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 47 H 0.05 0.33 7.96 -2.39 -0.02 0.31 16 48 H 0.07 0.01 7.96 -2.38 -0.02 -0.01 16 49 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 50 H 0.08 -0.58 7.92 -2.39 -0.02 -0.60 16 51 H 0.08 -0.09 7.99 -2.39 -0.02 -0.11 16 Total: 0.00 -23.85 407.94 3.18 -20.67 By element: Atomic # 1 Polarization: -11.42 SS G_CDS: -0.86 Total: -12.28 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.02 Total: 14.80 kcal Atomic # 7 Polarization: -0.20 SS G_CDS: -2.20 Total: -2.39 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -2.33 Total: -15.09 kcal Atomic # 14 Polarization: -8.25 SS G_CDS: 2.55 Total: -5.71 kcal Total: -23.85 3.18 -20.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_10157680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.054 kcal (2) G-P(sol) polarization free energy of solvation -23.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds