Wall clock time and date at job start Sun Mar 7 2021 08:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86296 * 109.98303 * 2 1 4 4 C 1.87517 * 110.00453 * 121.31651 * 2 1 3 5 5 C 1.53923 * 106.85046 * 163.09886 * 4 2 1 6 6 C 1.52624 * 109.31131 * 302.79535 * 5 4 2 7 7 N 1.46355 * 111.89065 * 76.52386 * 6 5 4 8 8 N 1.36607 * 110.99862 * 156.80827 * 7 6 5 9 9 C 1.34773 * 119.99285 * 235.43141 * 8 7 6 10 10 O 1.21692 * 120.00668 * 354.99022 * 9 8 7 11 11 C 1.46682 * 119.99624 * 174.71408 * 9 8 7 12 12 C 1.37880 * 126.23360 * 180.27598 * 11 9 8 13 13 C 1.39832 * 107.08686 * 179.97438 * 12 11 9 14 14 C 1.50698 * 126.06972 * 180.02562 * 13 12 11 15 15 O 1.42905 * 109.46874 * 65.00010 * 14 13 12 16 16 Si 1.86294 * 109.47052 * 184.99872 * 14 13 12 17 17 H 1.48493 * 109.47418 * 299.99934 * 16 14 13 18 18 H 1.48496 * 109.47322 * 60.00388 * 16 14 13 19 19 H 1.48503 * 109.46788 * 180.02562 * 16 14 13 20 20 C 1.35463 * 107.86324 * 0.02562 * 13 12 11 21 21 N 1.35533 * 108.87161 * 359.76565 * 20 13 12 22 22 C 1.47729 * 111.30394 * 280.97717 * 7 6 5 23 23 H 1.09004 * 109.47243 * 298.68106 * 1 2 3 24 24 H 1.09002 * 109.47243 * 58.68695 * 1 2 3 25 25 H 1.08999 * 109.47325 * 178.68219 * 1 2 3 26 26 H 1.08998 * 109.47117 * 181.31676 * 3 2 1 27 27 H 1.09003 * 109.47401 * 301.31554 * 3 2 1 28 28 H 1.08999 * 109.47085 * 61.31647 * 3 2 1 29 29 H 1.09006 * 109.97864 * 43.76335 * 4 2 1 30 30 H 1.08999 * 110.05130 * 282.47599 * 4 2 1 31 31 H 1.09002 * 109.49797 * 182.84399 * 5 4 2 32 32 H 1.09001 * 109.50199 * 62.74543 * 5 4 2 33 33 H 1.09002 * 108.99788 * 315.90179 * 6 5 4 34 34 H 1.09006 * 108.93196 * 197.10442 * 6 5 4 35 35 H 0.96990 * 120.00336 * 55.42947 * 8 7 6 36 36 H 1.08001 * 126.45543 * 359.97438 * 12 11 9 37 37 H 1.08996 * 109.46948 * 305.00538 * 14 13 12 38 38 H 0.96697 * 113.99924 * 180.02562 * 15 14 13 39 39 H 1.07990 * 125.55973 * 179.97438 * 20 13 12 40 40 H 0.96993 * 125.68032 * 180.23140 * 21 20 13 41 41 H 1.09000 * 109.94555 * 179.68492 * 22 7 6 42 42 H 1.09006 * 109.94708 * 300.93831 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5045 -0.9158 1.5053 5 6 3.9816 -1.2490 1.2290 6 6 4.0831 -2.0636 -0.0577 7 7 3.9262 -1.2260 -1.2476 8 7 4.5042 -1.8115 -2.3381 9 6 5.4348 -1.1430 -3.0477 10 8 5.6945 0.0138 -2.7733 11 6 6.1391 -1.8118 -4.1470 12 6 7.1126 -1.2554 -4.9493 13 6 7.5071 -2.2406 -5.8599 14 6 8.5519 -2.0878 -6.9350 15 8 9.8301 -1.8791 -6.3309 16 14 8.6019 -3.6318 -7.9762 17 1 8.9403 -4.7962 -7.1191 18 1 7.2738 -3.8487 -8.6041 19 1 9.6320 -3.4814 -9.0353 20 6 6.7834 -3.3567 -5.6040 21 7 5.9519 -3.1108 -4.5623 22 6 2.5042 -0.9181 -1.5036 23 1 -0.3634 0.4932 0.9016 24 1 -0.3634 0.5341 -0.8780 25 1 -0.3634 -1.0274 -0.0236 26 1 3.5893 1.7412 -0.0236 27 1 2.1219 2.2749 -0.8780 28 1 2.1603 2.2608 0.9015 29 1 1.9367 -1.8347 1.6522 30 1 2.4245 -0.2836 2.3896 31 1 4.3853 -1.8285 2.0592 32 1 4.5489 -0.3247 1.1200 33 1 3.3054 -2.8274 -0.0564 34 1 5.0579 -2.5502 -0.0923 35 1 4.2450 -2.7082 -2.6016 36 1 7.4978 -0.2484 -4.8863 37 1 8.3036 -1.2331 -7.5641 38 1 10.5521 -1.7719 -6.9651 39 1 6.8593 -4.2910 -6.1401 40 1 5.3274 -3.7440 -4.1752 41 1 2.4134 -0.2899 -2.3897 42 1 1.9428 -1.8421 -1.6425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_10543058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:27:24 Heat of formation + Delta-G solvation = -25.583248 kcal Electronic energy + Delta-G solvation = -22097.409907 eV Core-core repulsion = 18816.813319 eV Total energy + Delta-G solvation = -3280.596588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40724 -40.53844 -38.29380 -37.57325 -34.96292 -32.87305 -31.73281 -30.34568 -29.42181 -28.40459 -27.65392 -26.57235 -25.19331 -23.39448 -21.96679 -21.13916 -20.58632 -19.78505 -18.35069 -18.27423 -17.12715 -16.80848 -16.05575 -15.69035 -15.31879 -15.15765 -14.93642 -14.84208 -14.64721 -14.45790 -14.31149 -14.14242 -14.10580 -13.84829 -13.59904 -13.31493 -13.27230 -13.15155 -13.03170 -12.46981 -12.13874 -12.13091 -12.06952 -11.85883 -11.36462 -10.87995 -10.80620 -10.42915 -10.25609 -10.16376 -9.85376 -9.77764 -9.23955 0.50182 1.19132 1.34899 1.42575 1.47559 1.63074 1.71686 1.79713 1.92428 1.99913 2.05704 2.49832 2.54485 3.31075 3.59494 3.82148 3.89199 3.94202 4.07393 4.12339 4.31750 4.34304 4.43697 4.56118 4.62436 4.64602 4.67419 4.68866 4.79304 4.88241 4.93900 4.94800 4.98799 5.13439 5.20762 5.33953 5.40652 5.64334 5.70309 5.73343 5.85232 6.21540 6.28709 6.47814 6.73112 7.53323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.032 2.968 3 C -0.443 4.443 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.272 5.272 8 N -0.589 5.589 9 C 0.606 3.394 10 O -0.498 6.498 11 C -0.055 4.055 12 C -0.070 4.070 13 C -0.166 4.166 14 C -0.046 4.046 15 O -0.546 6.546 16 Si 0.943 3.057 17 H -0.250 1.250 18 H -0.251 1.251 19 H -0.255 1.255 20 C 0.029 3.971 21 N -0.536 5.536 22 C -0.261 4.261 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.369 0.631 36 H 0.153 0.847 37 H 0.073 0.927 38 H 0.377 0.623 39 H 0.170 0.830 40 H 0.417 0.583 41 H 0.091 0.909 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -4.437 -0.978 5.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.225 2.775 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.088 5.088 8 N -0.334 5.334 9 C 0.394 3.606 10 O -0.369 6.369 11 C -0.168 4.168 12 C -0.097 4.097 13 C -0.173 4.173 14 C -0.158 4.158 15 O -0.351 6.351 16 Si 0.765 3.235 17 H -0.173 1.173 18 H -0.175 1.175 19 H -0.179 1.179 20 C -0.108 4.108 21 N -0.133 5.133 22 C -0.435 4.435 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.207 0.793 36 H 0.170 0.830 37 H 0.091 0.909 38 H 0.224 0.776 39 H 0.187 0.813 40 H 0.255 0.745 41 H 0.110 0.890 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.713 -4.057 -0.584 4.915 hybrid contribution -0.636 -1.354 -0.438 1.559 sum -3.348 -5.411 -1.022 6.445 Atomic orbital electron populations 1.26121 1.20359 1.04496 1.04863 0.79205 0.65825 0.67802 0.64685 1.26022 1.07399 1.17626 1.04120 1.26385 1.00673 1.08095 1.14475 1.21187 0.96679 1.01175 0.94860 1.22577 1.02173 0.95246 0.90225 1.62992 1.13935 1.38140 0.93749 1.45490 1.42316 1.17408 1.28146 1.16811 0.78057 0.85822 0.79953 1.90857 1.63693 1.15476 1.66865 1.20394 1.07107 0.85693 1.03633 1.21186 0.94879 0.99926 0.93666 1.18725 1.01729 0.94404 1.02394 1.23993 0.84021 1.09372 0.98367 1.86538 1.15993 1.95672 1.36909 0.85848 0.81503 0.77812 0.78301 1.17334 1.17476 1.17857 1.21756 0.96004 0.99835 0.93163 1.41881 1.32996 1.11454 1.26921 1.28107 0.90870 1.06912 1.17569 0.90672 0.91036 0.91294 0.90252 0.91318 0.91359 0.90731 0.90001 0.90752 0.90117 0.93685 0.90094 0.79320 0.82958 0.90871 0.77568 0.81258 0.74526 0.89008 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.81 8.65 101.05 0.87 1.68 16 2 Si 1.03 -2.07 11.99 -169.99 -2.04 -4.11 16 3 C -0.44 -0.07 8.65 101.05 0.87 0.80 16 4 C -0.41 0.72 5.03 37.64 0.19 0.91 16 5 C -0.10 0.07 5.74 -26.44 -0.15 -0.08 16 6 C 0.03 -0.01 5.38 -4.31 -0.02 -0.04 16 7 N -0.27 -0.33 4.15 -56.96 -0.24 -0.57 16 8 N -0.59 -0.55 4.71 30.26 0.14 -0.41 16 9 C 0.61 2.33 7.89 -12.85 -0.10 2.23 16 10 O -0.50 -3.96 17.21 5.20 0.09 -3.87 16 11 C -0.05 -0.13 7.05 -81.97 -0.58 -0.71 16 12 C -0.07 -0.23 10.59 -39.12 -0.41 -0.65 16 13 C -0.17 -0.28 5.46 -105.02 -0.57 -0.86 16 14 C -0.05 0.00 3.01 36.00 0.11 0.11 16 15 O -0.55 -0.55 12.86 -35.23 -0.45 -1.00 16 16 Si 0.94 -1.07 25.89 -169.99 -4.40 -5.47 16 17 H -0.25 0.02 7.11 56.52 0.40 0.42 16 18 H -0.25 0.20 7.11 56.52 0.40 0.60 16 19 H -0.25 0.17 7.11 56.52 0.40 0.57 16 20 C 0.03 -0.01 10.45 -16.91 -0.18 -0.18 16 21 N -0.54 0.52 5.99 -9.39 -0.06 0.46 16 22 C -0.26 0.09 4.86 60.52 0.29 0.38 16 23 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.08 0.14 7.96 -51.93 -0.41 -0.27 16 27 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 28 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 29 H 0.07 -0.17 7.99 -51.93 -0.42 -0.58 16 30 H 0.08 -0.16 7.99 -51.93 -0.42 -0.57 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.08 0.03 7.96 -51.93 -0.41 -0.39 16 33 H 0.04 -0.08 7.78 -51.93 -0.40 -0.49 16 34 H 0.08 -0.02 8.03 -51.93 -0.42 -0.44 16 35 H 0.37 -0.81 7.97 -185.16 -1.48 -2.28 16 36 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 38 H 0.38 -1.33 8.74 45.56 0.40 -0.93 16 39 H 0.17 -0.48 6.21 -52.49 -0.33 -0.81 16 40 H 0.42 -1.86 8.20 -40.82 -0.33 -2.20 16 41 H 0.09 0.07 7.99 -51.93 -0.41 -0.35 16 42 H 0.05 -0.08 7.92 -51.93 -0.41 -0.49 16 LS Contribution 345.61 15.07 5.21 5.21 Total: 0.00 -9.11 345.61 -8.59 -17.69 By element: Atomic # 1 Polarization: -4.36 SS G_CDS: -7.16 Total: -11.53 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 0.32 Total: 3.60 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -0.15 Total: -0.52 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.36 Total: -4.88 kcal Atomic # 14 Polarization: -3.14 SS G_CDS: -6.44 Total: -9.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -9.11 -8.59 -17.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_10543058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.889 kcal (2) G-P(sol) polarization free energy of solvation -9.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds