Wall clock time and date at job start Sun Mar 7 2021 08:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86296 * 109.98303 * 2 1 4 4 C 1.87517 * 110.00453 * 121.31651 * 2 1 3 5 5 C 1.53923 * 106.85046 * 163.09886 * 4 2 1 6 6 C 1.52624 * 109.31131 * 302.79535 * 5 4 2 7 7 N 1.46355 * 111.89065 * 76.52386 * 6 5 4 8 8 N 1.36607 * 110.99862 * 156.80827 * 7 6 5 9 9 C 1.34773 * 119.99285 * 235.43141 * 8 7 6 10 10 O 1.21692 * 120.00668 * 354.99022 * 9 8 7 11 11 C 1.46682 * 119.99624 * 174.71408 * 9 8 7 12 12 C 1.37880 * 126.23360 * 180.27598 * 11 9 8 13 13 C 1.39832 * 107.08686 * 179.97438 * 12 11 9 14 14 C 1.50698 * 126.06972 * 180.02562 * 13 12 11 15 15 O 1.42905 * 109.46874 * 65.00010 * 14 13 12 16 16 Si 1.86294 * 109.47052 * 184.99872 * 14 13 12 17 17 H 1.48493 * 109.47418 * 299.99934 * 16 14 13 18 18 H 1.48496 * 109.47322 * 60.00388 * 16 14 13 19 19 H 1.48503 * 109.46788 * 180.02562 * 16 14 13 20 20 C 1.35463 * 107.86324 * 0.02562 * 13 12 11 21 21 N 1.35533 * 108.87161 * 359.76565 * 20 13 12 22 22 C 1.47729 * 111.30394 * 280.97717 * 7 6 5 23 23 H 1.09004 * 109.47243 * 298.68106 * 1 2 3 24 24 H 1.09002 * 109.47243 * 58.68695 * 1 2 3 25 25 H 1.08999 * 109.47325 * 178.68219 * 1 2 3 26 26 H 1.08998 * 109.47117 * 181.31676 * 3 2 1 27 27 H 1.09003 * 109.47401 * 301.31554 * 3 2 1 28 28 H 1.08999 * 109.47085 * 61.31647 * 3 2 1 29 29 H 1.09006 * 109.97864 * 43.76335 * 4 2 1 30 30 H 1.08999 * 110.05130 * 282.47599 * 4 2 1 31 31 H 1.09002 * 109.49797 * 182.84399 * 5 4 2 32 32 H 1.09001 * 109.50199 * 62.74543 * 5 4 2 33 33 H 1.09002 * 108.99788 * 315.90179 * 6 5 4 34 34 H 1.09006 * 108.93196 * 197.10442 * 6 5 4 35 35 H 0.96990 * 120.00336 * 55.42947 * 8 7 6 36 36 H 1.08001 * 126.45543 * 359.97438 * 12 11 9 37 37 H 1.08996 * 109.46948 * 305.00538 * 14 13 12 38 38 H 0.96697 * 113.99924 * 180.02562 * 15 14 13 39 39 H 1.07990 * 125.55973 * 179.97438 * 20 13 12 40 40 H 0.96993 * 125.68032 * 180.23140 * 21 20 13 41 41 H 1.09000 * 109.94555 * 179.68492 * 22 7 6 42 42 H 1.09006 * 109.94708 * 300.93831 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5045 -0.9158 1.5053 5 6 3.9816 -1.2490 1.2290 6 6 4.0831 -2.0636 -0.0577 7 7 3.9262 -1.2260 -1.2476 8 7 4.5042 -1.8115 -2.3381 9 6 5.4348 -1.1430 -3.0477 10 8 5.6945 0.0138 -2.7733 11 6 6.1391 -1.8118 -4.1470 12 6 7.1126 -1.2554 -4.9493 13 6 7.5071 -2.2406 -5.8599 14 6 8.5519 -2.0878 -6.9350 15 8 9.8301 -1.8791 -6.3309 16 14 8.6019 -3.6318 -7.9762 17 1 8.9403 -4.7962 -7.1191 18 1 7.2738 -3.8487 -8.6041 19 1 9.6320 -3.4814 -9.0353 20 6 6.7834 -3.3567 -5.6040 21 7 5.9519 -3.1108 -4.5623 22 6 2.5042 -0.9181 -1.5036 23 1 -0.3634 0.4932 0.9016 24 1 -0.3634 0.5341 -0.8780 25 1 -0.3634 -1.0274 -0.0236 26 1 3.5893 1.7412 -0.0236 27 1 2.1219 2.2749 -0.8780 28 1 2.1603 2.2608 0.9015 29 1 1.9367 -1.8347 1.6522 30 1 2.4245 -0.2836 2.3896 31 1 4.3853 -1.8285 2.0592 32 1 4.5489 -0.3247 1.1200 33 1 3.3054 -2.8274 -0.0564 34 1 5.0579 -2.5502 -0.0923 35 1 4.2450 -2.7082 -2.6016 36 1 7.4978 -0.2484 -4.8863 37 1 8.3036 -1.2331 -7.5641 38 1 10.5521 -1.7719 -6.9651 39 1 6.8593 -4.2910 -6.1401 40 1 5.3274 -3.7440 -4.1752 41 1 2.4134 -0.2899 -2.3897 42 1 1.9428 -1.8421 -1.6425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_10543058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:27:23 Heat of formation + Delta-G solvation = -24.920861 kcal Electronic energy + Delta-G solvation = -22097.381183 eV Core-core repulsion = 18816.813319 eV Total energy + Delta-G solvation = -3280.567865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49679 -40.68312 -38.48275 -37.58177 -35.01897 -32.92181 -31.83375 -30.42416 -29.33755 -28.35724 -27.58789 -26.58998 -25.21852 -23.47861 -21.95366 -21.28586 -20.66859 -19.83577 -18.36633 -18.30960 -17.24773 -16.87424 -16.09829 -15.80016 -15.33389 -15.17027 -14.91790 -14.86318 -14.66595 -14.48992 -14.38574 -14.23900 -13.98851 -13.80862 -13.51747 -13.38246 -13.19841 -13.12583 -13.00995 -12.45639 -12.05864 -12.04899 -11.99073 -11.81415 -11.52974 -10.96361 -10.80972 -10.38474 -10.26000 -10.24112 -9.91790 -9.75806 -9.32869 0.34079 1.26193 1.36897 1.45803 1.56081 1.66715 1.79291 1.90082 1.99871 2.02295 2.14179 2.28186 2.60987 3.31795 3.65870 3.78030 3.98442 4.04788 4.11396 4.14535 4.27958 4.38832 4.50975 4.65126 4.68445 4.71542 4.79573 4.80191 4.83845 4.84466 4.87263 4.90657 4.99493 5.08701 5.29616 5.46613 5.54727 5.57418 5.65645 5.69737 5.78599 6.08771 6.29313 6.45170 6.94335 7.38574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.093 2.907 3 C -0.467 4.467 4 C -0.411 4.411 5 C -0.104 4.104 6 C 0.025 3.975 7 N -0.300 5.300 8 N -0.576 5.576 9 C 0.605 3.395 10 O -0.552 6.552 11 C -0.065 4.065 12 C -0.098 4.098 13 C -0.188 4.188 14 C -0.060 4.060 15 O -0.570 6.570 16 Si 0.992 3.008 17 H -0.260 1.260 18 H -0.250 1.250 19 H -0.262 1.262 20 C 0.044 3.956 21 N -0.517 5.517 22 C -0.273 4.273 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.388 0.612 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.394 0.606 39 H 0.202 0.798 40 H 0.436 0.564 41 H 0.075 0.925 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -6.901 -1.071 8.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.282 2.718 3 C -0.572 4.572 4 C -0.497 4.497 5 C -0.143 4.143 6 C -0.102 4.102 7 N -0.116 5.116 8 N -0.320 5.320 9 C 0.393 3.607 10 O -0.428 6.428 11 C -0.180 4.180 12 C -0.125 4.125 13 C -0.195 4.195 14 C -0.170 4.170 15 O -0.379 6.379 16 Si 0.814 3.186 17 H -0.184 1.184 18 H -0.174 1.174 19 H -0.186 1.186 20 C -0.094 4.094 21 N -0.115 5.115 22 C -0.444 4.444 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.228 0.772 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.244 0.756 39 H 0.219 0.781 40 H 0.277 0.723 41 H 0.094 0.906 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.970 -6.541 -0.677 7.681 hybrid contribution -0.209 -0.547 -0.421 0.721 sum -4.179 -7.088 -1.098 8.301 Atomic orbital electron populations 1.26141 1.19929 1.05147 1.04969 0.78290 0.65244 0.64787 0.63505 1.26360 1.06020 1.20825 1.04007 1.26406 0.99871 1.08889 1.14573 1.21215 0.97421 1.00503 0.95117 1.22606 1.02686 0.95439 0.89448 1.62966 1.14965 1.39505 0.94214 1.45285 1.41225 1.17829 1.27620 1.17059 0.78150 0.85317 0.80143 1.90820 1.65615 1.17792 1.68604 1.20104 1.07273 0.87046 1.03533 1.21245 0.96063 0.99912 0.95261 1.19064 1.02873 0.94642 1.02887 1.24312 0.83307 1.11216 0.98136 1.86485 1.16991 1.95875 1.38514 0.85138 0.80996 0.75580 0.76860 1.18440 1.17393 1.18592 1.22223 0.94544 1.00170 0.92436 1.41807 1.32819 1.10464 1.26364 1.28317 0.90227 1.07889 1.17972 0.90319 0.91263 0.90320 0.92521 0.92121 0.90827 0.89207 0.89585 0.89918 0.91954 0.91538 0.90579 0.77219 0.84968 0.90330 0.75645 0.78110 0.72342 0.90645 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.17 8.65 113.37 0.98 3.15 16 2 Si 1.09 -4.41 11.99 68.60 0.82 -3.58 16 3 C -0.47 -1.10 8.65 113.37 0.98 -0.12 16 4 C -0.41 1.84 5.03 72.29 0.36 2.21 16 5 C -0.10 0.14 5.74 30.78 0.18 0.32 16 6 C 0.03 -0.03 5.38 86.28 0.46 0.43 16 7 N -0.30 -0.97 4.15 -334.13 -1.39 -2.36 16 8 N -0.58 -1.50 4.71 -176.39 -0.83 -2.33 16 9 C 0.60 5.94 7.89 86.45 0.68 6.62 16 10 O -0.55 -10.83 17.21 -4.32 -0.07 -10.90 16 11 C -0.07 -0.40 7.05 40.35 0.28 -0.11 16 12 C -0.10 -0.89 10.59 22.57 0.24 -0.65 16 13 C -0.19 -0.77 5.46 -20.12 -0.11 -0.88 16 14 C -0.06 -0.04 3.01 71.24 0.21 0.18 16 15 O -0.57 -1.70 12.86 -148.98 -1.92 -3.62 16 16 Si 0.99 -3.33 25.89 68.60 1.78 -1.56 16 17 H -0.26 0.45 7.11 99.48 0.71 1.15 16 18 H -0.25 0.89 7.11 99.48 0.71 1.60 16 19 H -0.26 0.61 7.11 99.48 0.71 1.32 16 20 C 0.04 -0.07 10.45 83.48 0.87 0.81 16 21 N -0.52 1.28 5.99 -183.61 -1.10 0.18 16 22 C -0.27 0.14 4.86 127.53 0.62 0.76 16 23 H 0.08 -0.39 7.96 -2.38 -0.02 -0.41 16 24 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 25 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 26 H 0.06 0.39 7.96 -2.39 -0.02 0.37 16 27 H 0.06 0.21 7.96 -2.39 -0.02 0.19 16 28 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 29 H 0.09 -0.62 7.99 -2.38 -0.02 -0.64 16 30 H 0.09 -0.42 7.99 -2.39 -0.02 -0.43 16 31 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 33 H 0.07 -0.37 7.78 -2.39 -0.02 -0.39 16 34 H 0.08 -0.03 8.03 -2.38 -0.02 -0.05 16 35 H 0.39 -1.90 7.97 -215.50 -1.72 -3.62 16 36 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.08 -0.12 7.96 -2.39 -0.02 -0.14 16 38 H 0.39 -2.48 8.74 -74.06 -0.65 -3.13 16 39 H 0.20 -1.66 6.21 -2.92 -0.02 -1.68 16 40 H 0.44 -4.56 8.20 -92.71 -0.76 -5.32 16 41 H 0.07 0.21 7.99 -2.39 -0.02 0.20 16 42 H 0.07 -0.33 7.92 -2.38 -0.02 -0.35 16 Total: 0.00 -23.87 345.61 1.73 -22.14 By element: Atomic # 1 Polarization: -9.35 SS G_CDS: -1.33 Total: -10.68 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 5.77 Total: 12.71 kcal Atomic # 7 Polarization: -1.19 SS G_CDS: -3.32 Total: -4.51 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.99 Total: -14.52 kcal Atomic # 14 Polarization: -7.74 SS G_CDS: 2.60 Total: -5.14 kcal Total: -23.87 1.73 -22.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_10543058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.780 kcal (2) G-P(sol) polarization free energy of solvation -23.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds