Wall clock time and date at job start Sun Mar 7 2021 08:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35531 * 125.68050 * 2 1 4 4 C 1.35447 * 108.87588 * 179.82703 * 3 2 1 5 5 C 1.50703 * 126.07343 * 180.16431 * 4 3 2 6 6 O 1.42901 * 109.47010 * 300.29065 * 5 4 3 7 7 Si 1.86293 * 109.47395 * 180.29033 * 5 4 3 8 8 H 1.48496 * 109.47616 * 59.99795 * 7 5 4 9 9 H 1.48499 * 109.47014 * 180.02562 * 7 5 4 10 10 H 1.48511 * 109.46957 * 300.00071 * 7 5 4 11 11 C 1.39844 * 107.86355 * 0.43500 * 4 3 2 12 12 C 1.37654 * 125.67988 * 180.30884 * 2 1 3 13 13 C 1.46677 * 126.22740 * 359.97438 * 12 2 1 14 14 O 1.21697 * 119.99978 * 172.96627 * 13 12 2 15 15 N 1.34776 * 120.00340 * 352.96683 * 13 12 2 16 16 N 1.36608 * 119.99974 * 185.37919 * 15 13 12 17 17 C 1.46351 * 110.99844 * 238.75247 * 16 15 13 18 18 C 1.52627 * 111.89190 * 156.80144 * 17 16 15 19 19 C 1.53933 * 109.30759 * 76.52160 * 18 17 16 20 20 Si 1.87515 * 106.85202 * 302.79738 * 19 18 17 21 21 C 1.86293 * 110.00536 * 163.10072 * 20 19 18 22 22 C 1.86304 * 110.00201 * 284.40179 * 20 19 18 23 23 C 1.47725 * 111.00094 * 114.40100 * 16 15 13 24 24 H 1.08999 * 109.47215 * 257.33692 * 1 2 3 25 25 H 1.09003 * 109.46724 * 137.33383 * 1 2 3 26 26 H 1.09004 * 109.47030 * 17.33744 * 1 2 3 27 27 H 1.07998 * 125.56147 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46573 * 60.28679 * 5 4 3 29 29 H 0.96697 * 114.00169 * 299.99931 * 6 5 4 30 30 H 1.07995 * 126.45882 * 179.71634 * 11 4 3 31 31 H 0.96999 * 120.00397 * 5.37172 * 15 13 12 32 32 H 1.09001 * 108.99814 * 277.42493 * 17 16 15 33 33 H 1.09004 * 109.00181 * 36.26307 * 17 16 15 34 34 H 1.08995 * 109.49956 * 196.47276 * 18 17 16 35 35 H 1.08995 * 109.49867 * 316.57660 * 18 17 16 36 36 H 1.09005 * 109.97586 * 62.13204 * 19 18 17 37 37 H 1.09000 * 109.97356 * 183.36867 * 19 18 17 38 38 H 1.08994 * 109.47441 * 59.99567 * 21 20 19 39 39 H 1.09000 * 109.47346 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47224 * 299.99952 * 21 20 19 41 41 H 1.09006 * 109.46659 * 60.00224 * 22 20 19 42 42 H 1.09003 * 109.47103 * 179.97438 * 22 20 19 43 43 H 1.08999 * 109.47318 * 300.00032 * 22 20 19 44 44 H 1.08995 * 109.94829 * 303.86081 * 23 16 15 45 45 H 1.09002 * 109.94285 * 65.11630 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 0.0039 5 6 4.7538 1.6188 0.0087 6 8 4.7273 2.4493 -1.1539 7 14 6.3090 0.5932 0.0039 8 1 6.3372 -0.2576 -1.2128 9 1 7.4930 1.4895 0.0093 10 1 6.3365 -0.2698 1.2122 11 6 3.5780 -0.6889 -0.0037 12 6 2.2679 -1.1181 -0.0060 13 6 1.8124 -2.5124 -0.0130 14 8 2.6176 -3.4149 -0.1470 15 7 0.5020 -2.7940 0.1289 16 7 0.0898 -4.0922 0.2328 17 6 -0.8543 -4.4296 -0.8334 18 6 -0.8956 -5.9313 -1.1027 19 6 -1.7072 -6.6251 0.0061 20 14 -0.8854 -6.1900 1.6345 21 6 -2.0481 -6.5373 3.0480 22 6 0.6811 -7.1770 1.8414 23 6 -0.4882 -4.3591 1.5658 24 1 -0.3633 -0.2253 1.0026 25 1 -0.3633 -0.7557 -0.6965 26 1 -0.3633 0.9810 -0.3063 27 1 1.9082 2.1235 -0.0004 28 1 4.7330 2.2433 0.9018 29 1 4.7435 1.9595 -1.9875 30 1 4.4583 -1.3144 -0.0074 31 1 -0.1483 -2.0749 0.1574 32 1 -1.8502 -4.0932 -0.5451 33 1 -0.5568 -3.9146 -1.7469 34 1 -1.3674 -6.1150 -2.0680 35 1 0.1198 -6.3273 -1.1123 36 1 -2.7347 -6.2613 -0.0013 37 1 -1.6937 -7.7048 -0.1427 38 1 -2.3113 -7.5950 3.0505 39 1 -1.5619 -6.2820 3.9896 40 1 -2.9514 -5.9385 2.9310 41 1 1.3643 -6.9500 1.0230 42 1 1.1516 -6.9173 2.7897 43 1 0.4441 -8.2409 1.8324 44 1 0.2340 -4.1058 2.3418 45 1 -1.3993 -3.7757 1.6996 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_10803934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:27:32 Heat of formation + Delta-G solvation = -10.745218 kcal Electronic energy + Delta-G solvation = -24453.365593 eV Core-core repulsion = 21017.874812 eV Total energy + Delta-G solvation = -3435.490782 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65680 -40.70230 -38.51174 -37.71215 -35.23579 -34.03012 -32.01428 -30.37161 -29.34634 -28.54982 -28.36566 -27.58507 -26.02885 -25.00412 -23.19918 -22.02069 -21.24955 -20.88615 -19.07122 -18.37430 -17.40512 -17.08578 -16.96151 -16.47863 -15.78243 -15.72509 -15.47457 -15.25701 -15.01428 -14.86754 -14.68667 -14.43524 -14.21686 -13.99978 -13.81963 -13.65608 -13.52661 -13.28655 -13.20898 -13.14859 -13.12761 -12.99138 -12.33320 -12.12355 -12.06679 -12.00222 -11.78082 -11.55018 -10.94142 -10.82072 -10.42037 -10.37764 -10.26628 -9.78365 -9.73844 -9.27367 0.33110 1.26856 1.34480 1.46354 1.52954 1.60055 1.72588 1.79798 1.88872 1.98617 2.12780 2.22939 2.59802 3.30249 3.54526 3.61896 3.78821 3.96483 4.01946 4.11533 4.15913 4.22252 4.33067 4.37192 4.49087 4.50755 4.64696 4.69857 4.77069 4.78350 4.78713 4.83233 4.83298 4.84228 4.89041 5.02128 5.07881 5.28914 5.46143 5.56960 5.58291 5.64469 5.75759 5.78433 6.06849 6.14979 6.33276 6.80009 7.36310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.423 5.423 3 C 0.075 3.925 4 C -0.227 4.227 5 C -0.027 4.027 6 O -0.552 6.552 7 Si 0.970 3.030 8 H -0.269 1.269 9 H -0.270 1.270 10 H -0.272 1.272 11 C -0.127 4.127 12 C -0.072 4.072 13 C 0.600 3.400 14 O -0.555 6.555 15 N -0.581 5.581 16 N -0.304 5.304 17 C 0.026 3.974 18 C -0.104 4.104 19 C -0.411 4.411 20 Si 1.094 2.906 21 C -0.453 4.453 22 C -0.468 4.468 23 C -0.272 4.272 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.207 0.793 28 H 0.129 0.871 29 H 0.387 0.613 30 H 0.132 0.868 31 H 0.388 0.612 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 3.116 0.796 9.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.098 5.098 3 C -0.062 4.062 4 C -0.233 4.233 5 C -0.140 4.140 6 O -0.359 6.359 7 Si 0.798 3.202 8 H -0.194 1.194 9 H -0.195 1.195 10 H -0.197 1.197 11 C -0.154 4.154 12 C -0.185 4.185 13 C 0.389 3.611 14 O -0.431 6.431 15 N -0.330 5.330 16 N -0.121 5.121 17 C -0.101 4.101 18 C -0.142 4.142 19 C -0.498 4.498 20 Si 1.282 2.718 21 C -0.561 4.561 22 C -0.573 4.573 23 C -0.444 4.444 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.151 0.849 27 H 0.224 0.776 28 H 0.147 0.853 29 H 0.236 0.764 30 H 0.150 0.850 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.822 2.151 1.092 8.185 hybrid contribution -0.812 0.300 -0.264 0.905 sum -8.634 2.451 0.828 9.013 Atomic orbital electron populations 1.22702 0.74669 1.07547 1.04690 1.44239 1.07560 1.04757 1.53255 1.22337 0.89092 0.92509 1.02229 1.19895 0.96056 0.92678 1.14630 1.24012 1.00830 0.97162 0.91966 1.86443 1.97024 1.36183 1.16209 0.85407 0.76992 0.77570 0.80247 1.19370 1.19451 1.19724 1.21261 0.94970 0.95261 1.03867 1.20113 0.91388 0.86062 1.20934 1.17163 0.81717 0.86508 0.75710 1.90809 1.54541 1.47522 1.50239 1.45908 1.07212 1.04223 1.75653 1.62871 1.41481 1.04029 1.03682 1.22597 0.94670 0.98792 0.94089 1.21212 1.00871 0.92292 0.99869 1.26415 1.05569 1.04572 1.13199 0.78283 0.64996 0.61699 0.66777 1.26129 1.10776 1.05839 1.13375 1.26376 1.17490 1.09593 1.03850 1.28328 1.01840 1.23202 0.90986 0.88507 0.89447 0.84937 0.77580 0.85332 0.76447 0.85030 0.76602 0.91455 0.90954 0.89983 0.92078 0.89108 0.89617 0.90336 0.91212 0.90210 0.92605 0.92064 0.90826 0.90504 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.47 9.42 127.77 1.20 0.73 16 2 N -0.42 0.79 3.16 -534.31 -1.69 -0.89 16 3 C 0.08 -0.19 11.26 83.48 0.94 0.75 16 4 C -0.23 -0.46 5.41 -20.12 -0.11 -0.57 16 5 C -0.03 0.00 3.00 71.24 0.21 0.21 16 6 O -0.55 -0.11 12.87 -148.98 -1.92 -2.03 16 7 Si 0.97 3.46 25.92 68.60 1.78 5.24 16 8 H -0.27 -1.65 7.11 99.48 0.71 -0.95 16 9 H -0.27 -1.46 7.11 99.48 0.71 -0.76 16 10 H -0.27 -1.86 7.11 99.48 0.71 -1.15 16 11 C -0.13 -0.98 9.14 22.57 0.21 -0.77 16 12 C -0.07 -0.47 6.88 40.35 0.28 -0.19 16 13 C 0.60 6.30 7.87 86.45 0.68 6.98 16 14 O -0.55 -11.07 17.22 -4.34 -0.07 -11.14 16 15 N -0.58 -1.87 4.60 -176.39 -0.81 -2.68 16 16 N -0.30 -1.00 4.15 -334.15 -1.39 -2.39 16 17 C 0.03 -0.03 5.38 86.28 0.46 0.44 16 18 C -0.10 0.14 5.74 30.79 0.18 0.31 16 19 C -0.41 1.98 5.03 72.30 0.36 2.34 16 20 Si 1.09 -5.00 11.99 68.60 0.82 -4.18 16 21 C -0.45 2.49 8.65 113.37 0.98 3.47 16 22 C -0.47 -0.90 8.65 113.37 0.98 0.08 16 23 C -0.27 0.33 4.86 127.53 0.62 0.95 16 24 H 0.10 -1.25 7.95 -2.39 -0.02 -1.27 16 25 H 0.09 -0.98 6.39 -2.39 -0.02 -1.00 16 26 H 0.13 -2.14 8.09 -2.39 -0.02 -2.16 16 27 H 0.21 -1.89 8.06 -2.91 -0.02 -1.92 16 28 H 0.13 -0.37 7.96 -2.39 -0.02 -0.39 16 29 H 0.39 -1.88 8.70 -74.06 -0.64 -2.53 16 30 H 0.13 1.34 6.38 -2.91 -0.02 1.32 16 31 H 0.39 -1.47 4.50 -215.49 -0.97 -2.44 16 32 H 0.07 -0.40 7.78 -2.39 -0.02 -0.41 16 33 H 0.07 0.01 8.03 -2.38 -0.02 -0.01 16 34 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 36 H 0.09 -0.67 7.99 -2.38 -0.02 -0.69 16 37 H 0.09 -0.44 8.00 -2.39 -0.02 -0.45 16 38 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 39 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 40 H 0.08 -0.56 7.96 -2.38 -0.02 -0.58 16 41 H 0.05 0.37 7.96 -2.38 -0.02 0.35 16 42 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 43 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 44 H 0.08 0.14 7.99 -2.39 -0.02 0.12 16 45 H 0.07 -0.41 7.92 -2.39 -0.02 -0.43 16 Total: 0.00 -23.29 362.16 3.85 -19.45 By element: Atomic # 1 Polarization: -16.24 SS G_CDS: 0.13 Total: -16.11 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 7.00 Total: 14.73 kcal Atomic # 7 Polarization: -2.07 SS G_CDS: -3.89 Total: -5.96 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.99 Total: -13.17 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: 2.60 Total: 1.06 kcal Total: -23.29 3.85 -19.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_10803934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.702 kcal (2) G-P(sol) polarization free energy of solvation -23.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds