Wall clock time and date at job start Sun Mar 7 2021 08:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37649 * 125.67657 * 2 1 4 4 C 1.46677 * 126.23788 * 0.02599 * 3 2 1 5 5 O 1.21690 * 120.00269 * 172.95186 * 4 3 2 6 6 N 1.34783 * 119.99525 * 352.94656 * 4 3 2 7 7 N 1.36600 * 119.99578 * 186.65640 * 6 4 3 8 8 C 1.46361 * 110.99616 * 246.25404 * 7 6 4 9 9 C 1.52624 * 111.88891 * 203.19678 * 8 7 6 10 10 C 1.53935 * 109.31265 * 283.48149 * 9 8 7 11 11 Si 1.87518 * 106.84929 * 57.20431 * 10 9 8 12 12 C 1.86303 * 110.00596 * 75.50403 * 11 10 9 13 13 C 1.86298 * 110.00296 * 196.80616 * 11 10 9 14 14 C 1.47721 * 111.00233 * 10.60435 * 7 6 4 15 15 C 1.37873 * 107.53001 * 180.28301 * 3 2 1 16 16 C 1.39836 * 107.08553 * 359.58945 * 15 3 2 17 17 C 1.35455 * 107.86590 * 0.41187 * 16 15 3 18 18 C 1.50698 * 125.56558 * 179.76095 * 17 16 15 19 19 O 1.42894 * 109.47173 * 209.97939 * 18 17 16 20 20 Si 1.86299 * 109.47023 * 329.98164 * 18 17 16 21 21 H 1.48502 * 109.47188 * 299.99271 * 20 18 17 22 22 H 1.48495 * 109.47554 * 60.00094 * 20 18 17 23 23 H 1.48504 * 109.46802 * 179.97438 * 20 18 17 24 24 H 1.09000 * 109.47438 * 77.28183 * 1 2 3 25 25 H 1.08997 * 109.47153 * 197.28932 * 1 2 3 26 26 H 1.09007 * 109.47101 * 317.28466 * 1 2 3 27 27 H 0.97001 * 119.99911 * 6.65725 * 6 4 3 28 28 H 1.08995 * 108.99440 * 82.58174 * 8 7 6 29 29 H 1.08994 * 108.93618 * 323.77188 * 8 7 6 30 30 H 1.08996 * 109.50149 * 163.52937 * 9 8 7 31 31 H 1.09006 * 109.52251 * 43.44511 * 9 8 7 32 32 H 1.08996 * 109.97776 * 297.86948 * 10 9 8 33 33 H 1.08998 * 110.05153 * 176.57800 * 10 9 8 34 34 H 1.08993 * 109.47020 * 59.99521 * 12 11 10 35 35 H 1.09007 * 109.46679 * 300.00289 * 12 11 10 36 36 H 1.08992 * 109.47494 * 180.02562 * 12 11 10 37 37 H 1.08995 * 109.47225 * 298.68689 * 13 11 10 38 38 H 1.09005 * 109.47467 * 58.68542 * 13 11 10 39 39 H 1.09001 * 109.47139 * 178.68385 * 13 11 10 40 40 H 1.08999 * 109.94568 * 56.14110 * 14 7 6 41 41 H 1.08999 * 109.94885 * 294.88910 * 14 7 6 42 42 H 1.08007 * 126.45546 * 179.73677 * 15 3 2 43 43 H 1.08000 * 126.06385 * 180.16088 * 16 15 3 44 44 H 1.09004 * 109.46764 * 89.97488 * 18 17 16 45 45 H 0.96704 * 114.00162 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8125 2.5125 0.0005 5 8 2.6178 3.4155 0.1298 6 7 0.5020 2.7934 -0.1422 7 7 0.0923 4.0894 -0.2783 8 6 -0.7026 4.5120 0.8756 9 6 -1.6227 5.6812 0.5353 10 6 -0.7958 6.9781 0.4721 11 14 0.5502 6.7028 -0.8042 12 6 -0.1692 6.7994 -2.5200 13 6 1.8903 7.9811 -0.6029 14 6 1.2439 4.9887 -0.4952 15 6 3.5780 0.6888 -0.0065 16 6 3.5521 -0.7093 -0.0008 17 6 2.2554 -1.1010 -0.0005 18 6 1.7708 -2.5279 -0.0002 19 8 0.5125 -2.6037 -0.6731 20 14 3.0109 -3.6051 -0.8792 21 1 3.1692 -3.1364 -2.2794 22 1 4.3186 -3.5264 -0.1800 23 1 2.5336 -5.0113 -0.8784 24 1 -0.3634 0.2262 -1.0024 25 1 -0.3633 -0.9812 0.3054 26 1 -0.3634 0.7551 0.6972 27 1 -0.1501 2.0753 -0.1483 28 1 -0.0300 4.8121 1.6790 29 1 -1.3078 3.6715 1.2152 30 1 -2.3899 5.7761 1.3037 31 1 -2.0953 5.5037 -0.4308 32 1 -0.3498 7.1831 1.4453 33 1 -1.4302 7.8115 0.1705 34 1 -0.6128 7.7831 -2.6731 35 1 -0.9357 6.0331 -2.6362 36 1 0.6198 6.6379 -3.2544 37 1 1.4713 8.9749 -0.7607 38 1 2.3052 7.9174 0.4031 39 1 2.6788 7.7991 -1.3332 40 1 1.8164 4.6575 -1.3616 41 1 1.8797 4.9989 0.3901 42 1 4.4584 1.3144 -0.0122 43 1 4.4132 -1.3612 -0.0012 44 1 1.6547 -2.8720 1.0275 45 1 0.1396 -3.4952 -0.7108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_10803936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:30:35 Heat of formation + Delta-G solvation = 11.163890 kcal Electronic energy + Delta-G solvation = -24844.282818 eV Core-core repulsion = 21409.742087 eV Total energy + Delta-G solvation = -3434.540731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.77737 -41.29013 -38.15583 -37.65915 -35.31059 -33.91936 -32.33572 -30.83428 -29.34671 -28.36054 -27.82133 -27.56823 -26.78874 -25.01190 -22.92620 -21.83622 -21.57257 -20.70356 -19.01733 -18.37014 -18.16169 -17.06381 -17.03586 -16.47275 -15.98836 -15.72784 -15.60300 -15.11972 -14.87364 -14.70595 -14.42108 -14.38377 -14.07322 -13.85330 -13.78524 -13.69573 -13.55418 -13.33255 -13.22022 -13.08957 -13.06321 -12.91992 -12.73924 -12.31545 -12.03337 -12.00643 -11.90986 -11.77548 -11.51580 -10.79705 -10.59440 -10.39649 -9.86741 -9.82112 -9.22632 -8.90624 0.24267 1.06522 1.44767 1.49052 1.55381 1.62604 1.80212 1.83813 1.95620 2.04810 2.11153 2.18943 2.63811 3.13440 3.17290 3.56635 3.75798 3.82920 3.97887 4.14569 4.20940 4.33594 4.38363 4.46111 4.49278 4.52044 4.69963 4.71789 4.75279 4.77914 4.79209 4.86467 4.89973 4.95239 5.04409 5.09902 5.16004 5.30041 5.41564 5.49987 5.56273 5.64559 5.67040 5.84148 6.07588 6.13352 6.33672 6.75181 7.23233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.409 5.409 3 C -0.084 4.084 4 C 0.571 3.429 5 O -0.560 6.560 6 N -0.576 5.576 7 N -0.278 5.278 8 C 0.006 3.994 9 C -0.096 4.096 10 C -0.408 4.408 11 Si 1.058 2.942 12 C -0.446 4.446 13 C -0.460 4.460 14 C -0.252 4.252 15 C -0.118 4.118 16 C -0.229 4.229 17 C 0.065 3.935 18 C -0.056 4.056 19 O -0.560 6.560 20 Si 1.003 2.997 21 H -0.285 1.285 22 H -0.257 1.257 23 H -0.244 1.244 24 H 0.092 0.908 25 H 0.131 0.869 26 H 0.086 0.914 27 H 0.424 0.576 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.111 0.889 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -4.722 1.342 7.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.084 5.084 3 C -0.197 4.197 4 C 0.359 3.641 5 O -0.439 6.439 6 N -0.324 5.324 7 N -0.092 5.092 8 C -0.122 4.122 9 C -0.134 4.134 10 C -0.495 4.495 11 Si 1.248 2.752 12 C -0.554 4.554 13 C -0.567 4.567 14 C -0.422 4.422 15 C -0.145 4.145 16 C -0.253 4.253 17 C -0.054 4.054 18 C -0.166 4.166 19 O -0.371 6.371 20 Si 0.826 3.174 21 H -0.210 1.210 22 H -0.181 1.181 23 H -0.167 1.167 24 H 0.110 0.890 25 H 0.149 0.851 26 H 0.104 0.896 27 H 0.271 0.729 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.162 0.838 43 H 0.179 0.821 44 H 0.129 0.871 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.696 -3.994 0.525 6.976 hybrid contribution 0.411 -0.548 0.965 1.184 sum -5.284 -4.543 1.490 7.126 Atomic orbital electron populations 1.22678 0.74894 1.07242 1.04233 1.44054 1.07480 1.04137 1.52708 1.20575 0.91861 0.86415 1.20880 1.17830 0.83023 0.86839 0.76411 1.90876 1.56011 1.44993 1.52067 1.46143 1.06853 1.05709 1.73703 1.64522 1.18889 0.89869 1.35926 1.22881 0.97043 1.00451 0.91859 1.21175 0.97024 0.91497 1.03734 1.26325 1.11449 1.00391 1.11373 0.78880 0.65834 0.62808 0.67706 1.26068 1.06880 1.04818 1.17604 1.26221 1.13249 1.12891 1.04325 1.28379 0.96302 1.12705 1.04855 1.21385 0.94908 0.95324 1.02899 1.20862 0.96021 0.95006 1.13362 1.20490 0.90344 0.88422 1.06099 1.24487 0.94562 0.94335 1.03229 1.86372 1.34393 1.37054 1.79250 0.84940 0.77247 0.77089 0.78147 1.21018 1.18109 1.16673 0.89004 0.85052 0.89610 0.72855 0.94828 0.89316 0.89713 0.89762 0.90798 0.88916 0.90485 0.90786 0.92004 0.90060 0.91709 0.91734 0.91531 0.91145 0.83846 0.82079 0.87102 0.74084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.20 8.64 127.77 1.10 0.90 16 2 N -0.41 -1.43 3.16 -519.70 -1.64 -3.08 16 3 C -0.08 -0.78 6.88 40.35 0.28 -0.50 16 4 C 0.57 6.41 7.48 86.45 0.65 7.05 16 5 O -0.56 -9.72 12.41 -4.32 -0.05 -9.77 16 6 N -0.58 -2.96 5.46 -176.38 -0.96 -3.92 16 7 N -0.28 -1.25 5.00 -334.15 -1.67 -2.92 16 8 C 0.01 0.00 5.38 86.28 0.46 0.47 16 9 C -0.10 0.26 5.74 30.79 0.18 0.43 16 10 C -0.41 0.99 5.04 72.30 0.36 1.36 16 11 Si 1.06 -0.76 11.99 68.60 0.82 0.07 16 12 C -0.45 0.04 8.65 113.37 0.98 1.02 16 13 C -0.46 -0.63 8.65 113.37 0.98 0.35 16 14 C -0.25 -1.84 2.87 127.53 0.37 -1.48 16 15 C -0.12 -1.15 10.66 22.57 0.24 -0.91 16 16 C -0.23 -1.21 9.37 22.01 0.21 -1.00 16 17 C 0.07 0.17 6.18 41.34 0.26 0.43 16 18 C -0.06 0.29 2.88 71.24 0.20 0.49 16 19 O -0.56 4.10 10.05 -148.98 -1.50 2.61 16 20 Si 1.00 -3.87 26.55 68.60 1.82 -2.05 16 21 H -0.28 -0.73 7.11 99.48 0.71 -0.03 16 22 H -0.26 0.56 6.79 99.48 0.68 1.23 16 23 H -0.24 1.36 7.11 99.48 0.71 2.07 16 24 H 0.09 -0.49 7.96 -2.39 -0.02 -0.50 16 25 H 0.13 -0.94 5.97 -2.39 -0.01 -0.95 16 26 H 0.09 -0.57 6.39 -2.38 -0.02 -0.59 16 27 H 0.42 -0.26 4.48 -215.49 -0.97 -1.23 16 28 H 0.03 0.12 7.78 -2.39 -0.02 0.10 16 29 H 0.09 -0.22 8.03 -2.39 -0.02 -0.24 16 30 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.08 -0.31 7.96 -2.38 -0.02 -0.33 16 32 H 0.07 -0.13 7.99 -2.39 -0.02 -0.15 16 33 H 0.09 -0.42 7.99 -2.39 -0.02 -0.44 16 34 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 35 H 0.07 0.02 7.96 -2.38 -0.02 0.00 16 36 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 37 H 0.08 -0.05 7.96 -2.39 -0.02 -0.07 16 38 H 0.06 0.16 7.96 -2.38 -0.02 0.14 16 39 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 40 H 0.07 0.77 7.12 -2.39 -0.02 0.75 16 41 H 0.07 0.86 5.81 -9.18 -0.05 0.81 16 42 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 43 H 0.16 0.23 6.65 -2.91 -0.02 0.21 16 44 H 0.11 -1.11 7.96 -2.38 -0.02 -1.13 16 45 H 0.41 -6.66 8.74 -74.05 -0.65 -7.31 16 Total: 0.00 -20.22 348.87 3.15 -17.07 By element: Atomic # 1 Polarization: -6.69 SS G_CDS: 0.07 Total: -6.62 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.27 Total: 8.62 kcal Atomic # 7 Polarization: -5.64 SS G_CDS: -4.28 Total: -9.92 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -1.55 Total: -7.16 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: 2.64 Total: -1.99 kcal Total: -20.22 3.15 -17.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_10803936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.236 kcal (2) G-P(sol) polarization free energy of solvation -20.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds