Wall clock time and date at job start Sun Mar 7 2021 08:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86303 * 109.98482 * 2 1 4 4 C 1.87522 * 110.00387 * 121.31098 * 2 1 3 5 5 C 1.53924 * 106.85133 * 163.09683 * 4 2 1 6 6 C 1.52625 * 109.31278 * 302.79843 * 5 4 2 7 7 N 1.46355 * 111.88925 * 76.52170 * 6 5 4 8 8 N 1.36605 * 111.00141 * 156.80414 * 7 6 5 9 9 C 1.34774 * 119.99925 * 235.43566 * 8 7 6 10 10 O 1.21726 * 120.00044 * 354.98822 * 9 8 7 11 11 C 1.46563 * 120.00002 * 174.98718 * 9 8 7 12 12 C 1.40854 * 126.58401 * 180.02562 * 11 9 8 13 13 C 1.40098 * 132.86241 * 0.03167 * 12 11 9 14 14 C 1.36445 * 119.25195 * 180.02562 * 13 12 11 15 15 C 1.50698 * 120.29311 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.46947 * 120.00332 * 15 14 13 17 17 Si 1.86300 * 109.47151 * 239.99718 * 15 14 13 18 18 H 1.48498 * 109.47259 * 300.00207 * 17 15 14 19 19 H 1.48507 * 109.46916 * 59.99893 * 17 15 14 20 20 H 1.48498 * 109.47569 * 179.97438 * 17 15 14 21 21 C 1.40163 * 119.41131 * 0.27717 * 14 13 12 22 22 C 1.35183 * 120.31428 * 359.40137 * 21 14 13 23 23 N 1.36240 * 120.70803 * 0.64103 * 22 21 14 24 24 N 1.40018 * 132.01204 * 179.68694 * 23 22 21 25 25 C 1.30745 * 109.60188 * 179.97438 * 24 23 22 26 26 C 1.47727 * 111.30698 * 280.97994 * 7 6 5 27 27 H 1.08998 * 109.47044 * 298.68790 * 1 2 3 28 28 H 1.09004 * 109.46464 * 58.68829 * 1 2 3 29 29 H 1.08998 * 109.47031 * 178.68729 * 1 2 3 30 30 H 1.09001 * 109.47278 * 181.31672 * 3 2 1 31 31 H 1.09004 * 109.47043 * 301.31452 * 3 2 1 32 32 H 1.08996 * 109.47161 * 61.30787 * 3 2 1 33 33 H 1.09004 * 109.97315 * 43.76507 * 4 2 1 34 34 H 1.09002 * 110.05404 * 282.48010 * 4 2 1 35 35 H 1.09002 * 109.49728 * 182.84431 * 5 4 2 36 36 H 1.09007 * 109.49345 * 62.75032 * 5 4 2 37 37 H 1.08999 * 108.99641 * 315.90007 * 6 5 4 38 38 H 1.09005 * 108.93149 * 197.09813 * 6 5 4 39 39 H 0.96992 * 119.99705 * 55.43156 * 8 7 6 40 40 H 1.08001 * 120.37315 * 359.97438 * 13 12 11 41 41 H 1.08999 * 109.47284 * 0.02562 * 15 14 13 42 42 H 0.96700 * 114.00897 * 59.99806 * 16 15 14 43 43 H 1.07998 * 119.84160 * 179.72836 * 21 14 13 44 44 H 1.07997 * 119.64471 * 180.30379 * 22 21 14 45 45 H 1.08004 * 125.62511 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.94768 * 179.68552 * 26 7 6 47 47 H 1.09000 * 109.94627 * 300.93718 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4998 1.7508 0.0000 4 6 2.5045 -0.9157 1.5055 5 6 3.9816 -1.2490 1.2291 6 6 4.0832 -2.0636 -0.0575 7 7 3.9263 -1.2261 -1.2474 8 7 4.5044 -1.8116 -2.3379 9 6 5.4351 -1.1432 -3.0475 10 8 5.6947 0.0139 -2.7730 11 6 6.1345 -1.8096 -4.1497 12 6 7.1257 -1.2468 -4.9773 13 6 7.7227 0.0197 -5.0229 14 6 8.6786 0.2727 -5.9632 15 6 9.3366 1.6266 -6.0331 16 8 10.7443 1.4829 -5.8336 17 14 9.0207 2.3851 -7.7051 18 1 9.5833 1.5062 -8.7616 19 1 7.5578 2.5344 -7.9125 20 1 9.6685 3.7195 -7.7738 21 6 9.0391 -0.7362 -6.8669 22 6 8.4542 -1.9530 -6.8002 23 7 7.4983 -2.2151 -5.8654 24 7 6.7467 -3.3640 -5.5902 25 6 5.9442 -3.1326 -4.5843 26 6 2.5043 -0.9182 -1.5034 27 1 -0.3633 0.4933 0.9015 28 1 -0.3632 0.5341 -0.8781 29 1 -0.3633 -1.0274 -0.0235 30 1 3.5895 1.7412 -0.0236 31 1 2.1220 2.2748 -0.8780 32 1 2.1603 2.2609 0.9014 33 1 1.9367 -1.8345 1.6523 34 1 2.4245 -0.2835 2.3897 35 1 4.3854 -1.8284 2.0595 36 1 4.5489 -0.3245 1.1202 37 1 3.3055 -2.8274 -0.0561 38 1 5.0580 -2.5502 -0.0920 39 1 4.2451 -2.7083 -2.6014 40 1 7.4292 0.7874 -4.3223 41 1 8.9240 2.2716 -5.2573 42 1 11.1791 0.9202 -6.4889 43 1 9.7917 -0.5421 -7.6168 44 1 8.7437 -2.7240 -7.4988 45 1 5.2500 -3.8414 -4.1574 46 1 2.4136 -0.2900 -2.3896 47 1 1.9430 -1.8421 -1.6423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_11618758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:30:47 Heat of formation + Delta-G solvation = 33.309637 kcal Electronic energy + Delta-G solvation = -28458.612745 eV Core-core repulsion = 24574.927992 eV Total energy + Delta-G solvation = -3883.684752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.28631 -40.59793 -39.39339 -38.16447 -37.24752 -34.79187 -34.18423 -32.13356 -31.80446 -29.95357 -29.36488 -28.36095 -27.57227 -27.26256 -25.38379 -24.61106 -23.38508 -22.96596 -21.81495 -21.13079 -19.13518 -18.69573 -18.32989 -17.83100 -17.29228 -16.96828 -16.70770 -16.51050 -15.92449 -15.48682 -15.44067 -15.14836 -15.03628 -14.79780 -14.57929 -14.40948 -14.32490 -14.06087 -14.02166 -13.79847 -13.54471 -13.52543 -13.25245 -13.22479 -13.10008 -12.96456 -12.44674 -12.23824 -12.09821 -12.04003 -11.98777 -11.89623 -11.50191 -11.18202 -10.82057 -10.78922 -10.56581 -10.33932 -10.32878 -9.96951 -9.63108 -8.75581 -0.55027 -0.15108 0.98191 0.99329 1.12810 1.31725 1.46036 1.49601 1.80505 1.82488 1.86459 2.07579 2.17568 2.58626 2.71232 3.04913 3.17676 3.33840 3.46185 3.51956 3.64586 3.86373 3.98361 4.00455 4.10317 4.16382 4.27401 4.37757 4.45565 4.52488 4.53518 4.64858 4.68783 4.69695 4.73120 4.76585 4.86848 4.94053 4.98860 5.06338 5.09219 5.17393 5.25758 5.27317 5.40622 5.45524 5.64331 5.73761 5.85668 6.31199 6.36623 6.47796 6.65079 7.78404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.030 2.970 3 C -0.442 4.442 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.272 5.272 8 N -0.585 5.585 9 C 0.617 3.383 10 O -0.524 6.524 11 C -0.311 4.311 12 C 0.170 3.830 13 C -0.090 4.090 14 C -0.071 4.071 15 C -0.082 4.082 16 O -0.530 6.530 17 Si 0.951 3.049 18 H -0.247 1.247 19 H -0.247 1.247 20 H -0.243 1.243 21 C -0.163 4.163 22 C 0.122 3.878 23 N -0.267 5.267 24 N -0.313 5.313 25 C 0.118 3.882 26 C -0.259 4.259 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.375 0.625 40 H 0.166 0.834 41 H 0.127 0.873 42 H 0.375 0.625 43 H 0.161 0.839 44 H 0.178 0.822 45 H 0.197 0.803 46 H 0.090 0.910 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -1.830 -1.691 2.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.223 2.777 3 C -0.551 4.551 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.088 5.088 8 N -0.329 5.329 9 C 0.405 3.595 10 O -0.398 6.398 11 C -0.327 4.327 12 C 0.049 3.951 13 C -0.109 4.109 14 C -0.077 4.077 15 C -0.191 4.191 16 O -0.335 6.335 17 Si 0.770 3.230 18 H -0.170 1.170 19 H -0.171 1.171 20 H -0.165 1.165 21 C -0.184 4.184 22 C -0.004 4.004 23 N -0.031 5.031 24 N -0.133 5.133 25 C -0.063 4.063 26 C -0.433 4.433 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.213 0.787 40 H 0.183 0.817 41 H 0.144 0.856 42 H 0.222 0.778 43 H 0.178 0.822 44 H 0.195 0.805 45 H 0.214 0.786 46 H 0.109 0.891 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.070 -0.838 -2.587 2.720 hybrid contribution -0.802 -1.611 0.226 1.814 sum -0.871 -2.449 -2.360 3.512 Atomic orbital electron populations 1.26124 1.20464 1.04487 1.04771 0.79225 0.65761 0.67796 0.64914 1.26016 1.07377 1.17676 1.04007 1.26380 1.00764 1.08059 1.14383 1.21184 0.96567 1.01129 0.94997 1.22561 1.02208 0.95212 0.90215 1.62922 1.13674 1.38320 0.93913 1.45273 1.42166 1.17655 1.27846 1.16575 0.77712 0.85371 0.79827 1.90767 1.64555 1.16201 1.68313 1.19570 1.09704 0.96020 1.07390 1.19249 0.95043 0.90138 0.90680 1.20743 0.96054 0.94745 0.99387 1.20491 0.96003 0.96968 0.94258 1.25097 0.83961 0.95738 1.14311 1.86622 1.17455 1.72783 1.56620 0.85691 0.82020 0.81215 0.74039 1.17037 1.17060 1.16545 1.20764 1.03526 0.91904 1.02218 1.21537 0.88554 0.98638 0.91695 1.46074 1.25608 1.09912 1.21500 1.77637 1.11599 1.02652 1.21457 1.24057 0.95352 0.94975 0.91870 1.28069 0.91124 1.06856 1.17250 0.90761 0.91086 0.91276 0.90260 0.91393 0.91461 0.90747 0.90140 0.90881 0.90224 0.93719 0.90075 0.78720 0.81654 0.85559 0.77751 0.82158 0.80507 0.78646 0.89125 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.68 8.65 101.05 0.87 1.55 16 2 Si 1.03 -1.79 11.99 -169.99 -2.04 -3.82 16 3 C -0.44 -0.12 8.65 101.05 0.87 0.75 16 4 C -0.41 0.60 5.03 37.64 0.19 0.79 16 5 C -0.10 0.04 5.74 -26.44 -0.15 -0.11 16 6 C 0.03 0.00 5.38 -4.31 -0.02 -0.03 16 7 N -0.27 -0.42 4.15 -56.97 -0.24 -0.66 16 8 N -0.59 -0.86 4.70 30.24 0.14 -0.72 16 9 C 0.62 2.52 7.88 -12.91 -0.10 2.42 16 10 O -0.52 -3.85 16.04 5.17 0.08 -3.77 16 11 C -0.31 -0.93 6.17 -104.68 -0.65 -1.57 16 12 C 0.17 0.53 6.76 -84.07 -0.57 -0.03 16 13 C -0.09 -0.17 9.35 -39.53 -0.37 -0.54 16 14 C -0.07 0.03 4.53 -104.55 -0.47 -0.44 16 15 C -0.08 0.12 2.84 36.00 0.10 0.22 16 16 O -0.53 0.50 12.88 -35.23 -0.45 0.05 16 17 Si 0.95 -1.75 27.24 -169.99 -4.63 -6.39 16 18 H -0.25 0.64 7.03 56.52 0.40 1.04 16 19 H -0.25 0.07 7.11 56.52 0.40 0.47 16 20 H -0.24 0.10 7.11 56.52 0.40 0.50 16 21 C -0.16 0.36 8.38 -39.95 -0.33 0.02 16 22 C 0.12 -0.11 11.17 -16.68 -0.19 -0.30 16 23 N -0.27 -0.60 3.86 -10.55 -0.04 -0.64 16 24 N -0.31 -0.88 12.57 30.75 0.39 -0.50 16 25 C 0.12 0.13 11.44 -17.14 -0.20 -0.07 16 26 C -0.26 0.00 4.86 60.52 0.29 0.29 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.08 0.14 7.96 -51.93 -0.41 -0.27 16 31 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 32 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 33 H 0.07 -0.14 7.99 -51.93 -0.42 -0.56 16 34 H 0.08 -0.13 8.00 -51.93 -0.42 -0.55 16 35 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 36 H 0.08 0.04 7.96 -51.93 -0.41 -0.37 16 37 H 0.04 -0.06 7.78 -51.93 -0.40 -0.46 16 38 H 0.08 0.01 8.03 -51.93 -0.42 -0.41 16 39 H 0.37 -0.52 7.76 -185.16 -1.44 -1.95 16 40 H 0.17 0.38 7.01 -52.49 -0.37 0.01 16 41 H 0.13 -0.23 7.71 -51.93 -0.40 -0.63 16 42 H 0.38 -1.86 8.10 45.56 0.37 -1.49 16 43 H 0.16 -0.91 7.24 -52.49 -0.38 -1.29 16 44 H 0.18 -0.68 8.06 -52.49 -0.42 -1.10 16 45 H 0.20 -0.59 7.47 -52.48 -0.39 -0.99 16 46 H 0.09 0.10 7.99 -51.93 -0.41 -0.31 16 47 H 0.05 -0.06 7.92 -51.93 -0.41 -0.47 16 LS Contribution 386.45 15.07 5.82 5.82 Total: 0.00 -10.05 386.45 -9.31 -19.36 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: -7.63 Total: -11.69 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.72 Total: 2.95 kcal Atomic # 7 Polarization: -2.76 SS G_CDS: 0.25 Total: -2.51 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.37 Total: -3.72 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: -6.67 Total: -10.21 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -10.05 -9.31 -19.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_11618758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.671 kcal (2) G-P(sol) polarization free energy of solvation -10.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds