Wall clock time and date at job start Sun Mar 7 2021 08:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86303 * 109.98482 * 2 1 4 4 C 1.87522 * 110.00387 * 121.31098 * 2 1 3 5 5 C 1.53924 * 106.85133 * 163.09683 * 4 2 1 6 6 C 1.52625 * 109.31278 * 302.79843 * 5 4 2 7 7 N 1.46355 * 111.88925 * 76.52170 * 6 5 4 8 8 N 1.36605 * 111.00141 * 156.80414 * 7 6 5 9 9 C 1.34774 * 119.99925 * 235.43566 * 8 7 6 10 10 O 1.21726 * 120.00044 * 354.98822 * 9 8 7 11 11 C 1.46563 * 120.00002 * 174.98718 * 9 8 7 12 12 C 1.40854 * 126.58401 * 180.02562 * 11 9 8 13 13 C 1.40098 * 132.86241 * 0.03167 * 12 11 9 14 14 C 1.36445 * 119.25195 * 180.02562 * 13 12 11 15 15 C 1.50698 * 120.29311 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.46947 * 120.00332 * 15 14 13 17 17 Si 1.86300 * 109.47151 * 239.99718 * 15 14 13 18 18 H 1.48498 * 109.47259 * 300.00207 * 17 15 14 19 19 H 1.48507 * 109.46916 * 59.99893 * 17 15 14 20 20 H 1.48498 * 109.47569 * 179.97438 * 17 15 14 21 21 C 1.40163 * 119.41131 * 0.27717 * 14 13 12 22 22 C 1.35183 * 120.31428 * 359.40137 * 21 14 13 23 23 N 1.36240 * 120.70803 * 0.64103 * 22 21 14 24 24 N 1.40018 * 132.01204 * 179.68694 * 23 22 21 25 25 C 1.30745 * 109.60188 * 179.97438 * 24 23 22 26 26 C 1.47727 * 111.30698 * 280.97994 * 7 6 5 27 27 H 1.08998 * 109.47044 * 298.68790 * 1 2 3 28 28 H 1.09004 * 109.46464 * 58.68829 * 1 2 3 29 29 H 1.08998 * 109.47031 * 178.68729 * 1 2 3 30 30 H 1.09001 * 109.47278 * 181.31672 * 3 2 1 31 31 H 1.09004 * 109.47043 * 301.31452 * 3 2 1 32 32 H 1.08996 * 109.47161 * 61.30787 * 3 2 1 33 33 H 1.09004 * 109.97315 * 43.76507 * 4 2 1 34 34 H 1.09002 * 110.05404 * 282.48010 * 4 2 1 35 35 H 1.09002 * 109.49728 * 182.84431 * 5 4 2 36 36 H 1.09007 * 109.49345 * 62.75032 * 5 4 2 37 37 H 1.08999 * 108.99641 * 315.90007 * 6 5 4 38 38 H 1.09005 * 108.93149 * 197.09813 * 6 5 4 39 39 H 0.96992 * 119.99705 * 55.43156 * 8 7 6 40 40 H 1.08001 * 120.37315 * 359.97438 * 13 12 11 41 41 H 1.08999 * 109.47284 * 0.02562 * 15 14 13 42 42 H 0.96700 * 114.00897 * 59.99806 * 16 15 14 43 43 H 1.07998 * 119.84160 * 179.72836 * 21 14 13 44 44 H 1.07997 * 119.64471 * 180.30379 * 22 21 14 45 45 H 1.08004 * 125.62511 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.94768 * 179.68552 * 26 7 6 47 47 H 1.09000 * 109.94627 * 300.93718 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4998 1.7508 0.0000 4 6 2.5045 -0.9157 1.5055 5 6 3.9816 -1.2490 1.2291 6 6 4.0832 -2.0636 -0.0575 7 7 3.9263 -1.2261 -1.2474 8 7 4.5044 -1.8116 -2.3379 9 6 5.4351 -1.1432 -3.0475 10 8 5.6947 0.0139 -2.7730 11 6 6.1345 -1.8096 -4.1497 12 6 7.1257 -1.2468 -4.9773 13 6 7.7227 0.0197 -5.0229 14 6 8.6786 0.2727 -5.9632 15 6 9.3366 1.6266 -6.0331 16 8 10.7443 1.4829 -5.8336 17 14 9.0207 2.3851 -7.7051 18 1 9.5833 1.5062 -8.7616 19 1 7.5578 2.5344 -7.9125 20 1 9.6685 3.7195 -7.7738 21 6 9.0391 -0.7362 -6.8669 22 6 8.4542 -1.9530 -6.8002 23 7 7.4983 -2.2151 -5.8654 24 7 6.7467 -3.3640 -5.5902 25 6 5.9442 -3.1326 -4.5843 26 6 2.5043 -0.9182 -1.5034 27 1 -0.3633 0.4933 0.9015 28 1 -0.3632 0.5341 -0.8781 29 1 -0.3633 -1.0274 -0.0235 30 1 3.5895 1.7412 -0.0236 31 1 2.1220 2.2748 -0.8780 32 1 2.1603 2.2609 0.9014 33 1 1.9367 -1.8345 1.6523 34 1 2.4245 -0.2835 2.3897 35 1 4.3854 -1.8284 2.0595 36 1 4.5489 -0.3245 1.1202 37 1 3.3055 -2.8274 -0.0561 38 1 5.0580 -2.5502 -0.0920 39 1 4.2451 -2.7083 -2.6014 40 1 7.4292 0.7874 -4.3223 41 1 8.9240 2.2716 -5.2573 42 1 11.1791 0.9202 -6.4889 43 1 9.7917 -0.5421 -7.6168 44 1 8.7437 -2.7240 -7.4988 45 1 5.2500 -3.8414 -4.1574 46 1 2.4136 -0.2900 -2.3896 47 1 1.9430 -1.8421 -1.6423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_11618758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:30:46 Heat of formation + Delta-G solvation = 35.172014 kcal Electronic energy + Delta-G solvation = -28458.531986 eV Core-core repulsion = 24574.927992 eV Total energy + Delta-G solvation = -3883.603993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.34053 -40.75804 -39.37086 -38.33669 -37.21233 -34.86236 -34.21993 -32.15036 -31.89633 -29.97131 -29.30673 -28.33521 -27.54276 -27.26440 -25.41724 -24.59615 -23.47077 -22.96277 -21.82069 -21.28207 -19.22229 -18.68859 -18.31084 -17.81782 -17.35656 -17.05450 -16.68956 -16.52720 -15.93772 -15.54583 -15.42760 -15.24533 -14.97776 -14.79203 -14.66101 -14.34265 -14.32777 -14.04269 -13.94984 -13.78342 -13.51490 -13.47157 -13.23154 -13.17667 -13.09717 -12.96268 -12.42600 -12.19764 -12.11585 -12.00178 -11.93138 -11.83636 -11.56837 -11.27862 -10.78641 -10.77727 -10.75790 -10.29335 -10.27978 -10.11772 -9.64806 -8.83059 -0.58821 -0.15395 0.98120 0.99923 1.10716 1.45189 1.53191 1.57664 1.86598 1.92777 1.94083 2.06442 2.21199 2.50873 2.64827 3.04113 3.22888 3.43049 3.50979 3.62046 3.70350 3.86503 3.94264 4.04830 4.14169 4.22493 4.35703 4.41531 4.46676 4.56944 4.58592 4.70844 4.75305 4.79115 4.81814 4.83809 4.86547 4.86718 4.95394 5.10544 5.12700 5.13627 5.24388 5.32992 5.49843 5.59322 5.63146 5.67665 5.87495 6.24452 6.30960 6.54604 6.70283 7.62635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.090 2.910 3 C -0.464 4.464 4 C -0.411 4.411 5 C -0.103 4.103 6 C 0.026 3.974 7 N -0.298 5.298 8 N -0.576 5.576 9 C 0.613 3.387 10 O -0.571 6.571 11 C -0.339 4.339 12 C 0.153 3.847 13 C -0.123 4.123 14 C -0.056 4.056 15 C -0.084 4.084 16 O -0.545 6.545 17 Si 0.991 3.009 18 H -0.218 1.218 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.156 4.156 22 C 0.115 3.885 23 N -0.273 5.273 24 N -0.338 5.338 25 C 0.130 3.870 26 C -0.271 4.271 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.390 0.610 40 H 0.147 0.853 41 H 0.119 0.881 42 H 0.394 0.606 43 H 0.205 0.795 44 H 0.209 0.791 45 H 0.231 0.769 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -3.495 -2.602 4.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.279 2.721 3 C -0.569 4.569 4 C -0.497 4.497 5 C -0.142 4.142 6 C -0.102 4.102 7 N -0.114 5.114 8 N -0.319 5.319 9 C 0.403 3.597 10 O -0.449 6.449 11 C -0.355 4.355 12 C 0.032 3.968 13 C -0.143 4.143 14 C -0.063 4.063 15 C -0.192 4.192 16 O -0.352 6.352 17 Si 0.810 3.190 18 H -0.140 1.140 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.176 4.176 22 C -0.010 4.010 23 N -0.037 5.037 24 N -0.158 5.158 25 C -0.051 4.051 26 C -0.443 4.443 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.230 0.770 40 H 0.165 0.835 41 H 0.137 0.863 42 H 0.244 0.756 43 H 0.222 0.778 44 H 0.226 0.774 45 H 0.247 0.753 46 H 0.091 0.909 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.096 -2.550 -3.517 4.346 hybrid contribution -0.754 -1.005 0.458 1.337 sum -0.658 -3.555 -3.059 4.736 Atomic orbital electron populations 1.26143 1.20037 1.05092 1.04915 0.78328 0.65198 0.64940 0.63622 1.26326 1.06042 1.20631 1.03950 1.26400 0.99941 1.08821 1.14523 1.21208 0.97330 1.00470 0.95157 1.22587 1.02588 0.95415 0.89564 1.62895 1.14623 1.39565 0.94351 1.45123 1.41323 1.18029 1.27468 1.16854 0.77823 0.84959 0.80054 1.90730 1.66241 1.18158 1.69820 1.19604 1.10801 0.97127 1.07976 1.19478 0.95395 0.90738 0.91200 1.20697 0.98174 0.94532 1.00907 1.20768 0.94406 0.97833 0.93245 1.25193 0.83906 0.95103 1.15039 1.86599 1.17349 1.73430 1.57865 0.85152 0.79801 0.80350 0.73657 1.14012 1.20054 1.18811 1.21275 1.03604 0.90650 1.02102 1.22316 0.87480 0.99970 0.91271 1.46323 1.26103 1.09459 1.21842 1.77556 1.12530 1.03322 1.22403 1.24541 0.94994 0.94607 0.90919 1.28297 0.90551 1.07715 1.17732 0.90330 0.91302 0.90396 0.92444 0.92148 0.90849 0.89325 0.89625 0.90058 0.91947 0.91787 0.90655 0.76956 0.83483 0.86283 0.75598 0.77843 0.77383 0.75322 0.90854 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.72 8.65 113.37 0.98 2.70 16 2 Si 1.09 -3.30 11.99 68.60 0.82 -2.48 16 3 C -0.46 -1.30 8.65 113.37 0.98 -0.32 16 4 C -0.41 1.43 5.03 72.29 0.36 1.79 16 5 C -0.10 0.03 5.74 30.78 0.18 0.21 16 6 C 0.03 0.01 5.38 86.28 0.46 0.47 16 7 N -0.30 -1.39 4.15 -334.14 -1.39 -2.77 16 8 N -0.58 -2.68 4.70 -176.45 -0.83 -3.51 16 9 C 0.61 6.84 7.88 86.41 0.68 7.52 16 10 O -0.57 -10.88 16.04 -4.43 -0.07 -10.95 16 11 C -0.34 -2.80 6.17 -19.90 -0.12 -2.92 16 12 C 0.15 1.30 6.76 39.50 0.27 1.57 16 13 C -0.12 -0.81 9.35 22.30 0.21 -0.60 16 14 C -0.06 0.02 4.53 -19.82 -0.09 -0.07 16 15 C -0.08 0.21 2.84 71.24 0.20 0.41 16 16 O -0.54 1.33 12.88 -148.98 -1.92 -0.58 16 17 Si 0.99 -4.07 27.24 68.60 1.87 -2.20 16 18 H -0.22 1.86 7.03 99.48 0.70 2.56 16 19 H -0.28 -0.14 7.11 99.48 0.71 0.56 16 20 H -0.26 0.13 7.11 99.48 0.71 0.84 16 21 C -0.16 0.92 8.38 22.03 0.18 1.11 16 22 C 0.12 -0.34 11.17 83.30 0.93 0.59 16 23 N -0.27 -1.37 3.86 -187.28 -0.72 -2.10 16 24 N -0.34 -2.03 12.57 -56.62 -0.71 -2.74 16 25 C 0.13 0.38 11.44 85.42 0.98 1.36 16 26 C -0.27 -0.27 4.86 127.53 0.62 0.35 16 27 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 29 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H 0.06 0.41 7.96 -2.39 -0.02 0.39 16 31 H 0.06 0.23 7.96 -2.38 -0.02 0.21 16 32 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 33 H 0.09 -0.51 7.99 -2.38 -0.02 -0.53 16 34 H 0.08 -0.34 8.00 -2.39 -0.02 -0.36 16 35 H 0.08 -0.17 8.14 -2.39 -0.02 -0.18 16 36 H 0.06 0.20 7.96 -2.38 -0.02 0.18 16 37 H 0.06 -0.24 7.78 -2.39 -0.02 -0.26 16 38 H 0.07 0.09 8.03 -2.38 -0.02 0.07 16 39 H 0.39 -0.81 7.76 -215.50 -1.67 -2.48 16 40 H 0.15 1.39 7.01 -2.91 -0.02 1.37 16 41 H 0.12 -0.16 7.71 -2.39 -0.02 -0.18 16 42 H 0.39 -4.66 8.10 -74.06 -0.60 -5.26 16 43 H 0.20 -3.10 7.24 -2.91 -0.02 -3.13 16 44 H 0.21 -2.10 8.06 -2.91 -0.02 -2.12 16 45 H 0.23 -1.46 7.47 -2.91 -0.02 -1.49 16 46 H 0.07 0.32 7.99 -2.39 -0.02 0.30 16 47 H 0.07 -0.18 7.92 -2.39 -0.02 -0.20 16 Total: 0.00 -27.15 386.45 3.35 -23.80 By element: Atomic # 1 Polarization: -10.10 SS G_CDS: -0.53 Total: -10.63 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 6.82 Total: 14.17 kcal Atomic # 7 Polarization: -7.48 SS G_CDS: -3.65 Total: -11.12 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -1.99 Total: -11.54 kcal Atomic # 14 Polarization: -7.37 SS G_CDS: 2.69 Total: -4.68 kcal Total: -27.15 3.35 -23.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_11618758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.974 kcal (2) G-P(sol) polarization free energy of solvation -27.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds