Wall clock time and date at job start Sun Mar 7 2021 08:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35458 * 125.55994 * 2 1 4 4 C 1.50695 * 126.07134 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47204 * 115.37116 * 4 3 2 6 6 Si 1.86301 * 109.47489 * 235.37764 * 4 3 2 7 7 H 1.48494 * 109.47042 * 63.69106 * 6 4 3 8 8 H 1.48497 * 109.47252 * 183.69440 * 6 4 3 9 9 H 1.48498 * 109.46943 * 303.69286 * 6 4 3 10 10 C 1.39841 * 107.85929 * 179.83993 * 3 2 1 11 11 C 1.50704 * 126.45176 * 180.15797 * 10 3 2 12 12 C 1.37868 * 107.08525 * 0.41275 * 10 3 2 13 13 C 1.46674 * 126.22985 * 179.72791 * 12 10 3 14 14 O 1.21694 * 120.00268 * 359.97438 * 13 12 10 15 15 N 1.34783 * 119.99729 * 180.02562 * 13 12 10 16 16 N 1.36600 * 119.99544 * 184.74461 * 15 13 12 17 17 C 1.46357 * 110.99940 * 235.07253 * 16 15 13 18 18 C 1.52619 * 111.89052 * 156.80786 * 17 16 15 19 19 C 1.53934 * 109.31426 * 76.52424 * 18 17 16 20 20 Si 1.87528 * 106.84814 * 302.79661 * 19 18 17 21 21 C 1.86301 * 110.00420 * 163.09651 * 20 19 18 22 22 C 1.86306 * 109.99968 * 284.40120 * 20 19 18 23 23 C 1.47730 * 110.99636 * 110.72518 * 16 15 13 24 24 N 1.35522 * 125.56606 * 180.29840 * 2 1 3 25 25 H 1.08996 * 109.47264 * 265.11636 * 1 2 3 26 26 H 1.08996 * 109.46746 * 145.11024 * 1 2 3 27 27 H 1.09007 * 109.47240 * 25.11778 * 1 2 3 28 28 H 1.09004 * 109.46836 * 355.37928 * 4 3 2 29 29 H 0.96707 * 113.99300 * 60.00315 * 5 4 3 30 30 H 1.08997 * 109.47134 * 270.32220 * 11 10 3 31 31 H 1.08988 * 109.47376 * 30.32819 * 11 10 3 32 32 H 1.08999 * 109.46521 * 150.32521 * 11 10 3 33 33 H 0.96993 * 120.00233 * 4.73864 * 15 13 12 34 34 H 1.09000 * 108.99729 * 277.42837 * 17 16 15 35 35 H 1.08993 * 108.99757 * 36.26527 * 17 16 15 36 36 H 1.09007 * 109.49973 * 196.47013 * 18 17 16 37 37 H 1.09000 * 109.50082 * 316.57287 * 18 17 16 38 38 H 1.08999 * 109.97406 * 62.12700 * 19 18 17 39 39 H 1.08993 * 109.98017 * 183.37170 * 19 18 17 40 40 H 1.09001 * 109.46967 * 59.99908 * 21 20 19 41 41 H 1.08996 * 109.47078 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.46816 * 300.00116 * 21 20 19 43 43 H 1.09002 * 109.46805 * 59.99829 * 22 20 19 44 44 H 1.09003 * 109.46685 * 179.97438 * 22 20 19 45 45 H 1.09000 * 109.47047 * 300.00081 * 22 20 19 46 46 H 1.08997 * 109.95105 * 303.85188 * 23 16 15 47 47 H 1.08999 * 109.94850 * 65.11564 * 23 16 15 48 48 H 0.96999 * 125.67909 * 359.96607 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1020 0.0000 4 6 1.8199 2.5321 -0.0005 5 8 2.2172 3.1664 1.2168 6 14 2.5718 3.4357 -1.4459 7 1 2.0876 2.8319 -2.7132 8 1 2.1756 4.8660 -1.3959 9 1 4.0515 3.3294 -1.3806 10 6 3.6270 0.6768 0.0037 11 6 4.8485 1.5594 0.0084 12 6 3.6122 -0.7018 -0.0036 13 6 4.7860 -1.5813 -0.0086 14 8 5.9049 -1.1028 -0.0068 15 7 4.6253 -2.9195 -0.0161 16 7 5.7145 -3.7386 0.0771 17 6 5.7569 -4.6839 -1.0394 18 6 7.1703 -5.2003 -1.2945 19 6 7.5285 -6.2511 -0.2282 20 14 7.3373 -5.4186 1.4412 21 6 7.2446 -6.7034 2.7872 22 6 8.7746 -4.2744 1.7510 23 6 5.7388 -4.4412 1.3764 24 7 2.2953 -1.1024 -0.0057 25 1 -0.3633 -0.0875 1.0239 26 1 -0.3633 -0.8429 -0.5878 27 1 -0.3634 0.9305 -0.4362 28 1 0.7332 2.5541 -0.0837 29 1 3.1738 3.1835 1.3573 30 1 5.1428 1.7778 -1.0181 31 1 4.6220 2.4905 0.5275 32 1 5.6643 1.0478 0.5192 33 1 3.7364 -3.3009 -0.0876 34 1 5.1058 -5.5286 -0.8142 35 1 5.3943 -4.1869 -1.9391 36 1 7.2185 -5.6550 -2.2840 37 1 7.8759 -4.3713 -1.2397 38 1 6.8499 -7.1011 -0.3004 39 1 8.5575 -6.5839 -0.3642 40 1 8.1582 -7.2979 2.7855 41 1 7.1341 -6.2105 3.7530 42 1 6.3878 -7.3535 2.6104 43 1 8.8070 -3.5127 0.9720 44 1 8.6546 -3.7952 2.7227 45 1 9.7028 -4.8457 1.7394 46 1 5.7122 -3.7175 2.1911 47 1 4.8866 -5.1169 1.4499 48 1 1.9834 -2.0209 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_12297754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:30:59 Heat of formation + Delta-G solvation = -36.189991 kcal Electronic energy + Delta-G solvation = -26545.368129 eV Core-core repulsion = 22953.236360 eV Total energy + Delta-G solvation = -3592.131769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.64877 -40.59635 -38.34622 -37.68982 -35.02796 -33.75113 -33.14622 -31.50028 -29.45050 -29.29360 -28.43181 -27.75086 -27.40225 -26.41442 -24.61685 -22.37353 -21.97045 -20.86819 -20.19720 -19.40911 -18.30954 -17.75398 -16.90253 -16.65210 -16.22978 -15.83090 -15.63207 -15.28939 -14.94654 -14.86868 -14.74131 -14.51352 -14.32499 -14.15987 -14.13450 -13.92608 -13.87108 -13.70379 -13.62340 -13.38019 -13.30104 -13.20350 -13.17502 -13.04286 -12.67242 -12.23969 -12.14917 -12.08691 -11.98543 -11.46764 -11.24818 -10.89847 -10.69506 -10.48116 -10.43389 -10.18668 -9.79264 -9.50587 -8.96679 0.45872 1.21388 1.32293 1.52844 1.61764 1.69052 1.77270 1.77753 1.96366 2.03522 2.14347 2.45710 2.50681 3.29274 3.65449 3.73681 3.78881 3.87359 3.99839 4.05282 4.07971 4.30738 4.33573 4.41840 4.43034 4.51351 4.54497 4.59695 4.60799 4.62554 4.65600 4.76152 4.81592 4.85187 4.91132 4.94594 4.97185 5.04183 5.18199 5.19066 5.32071 5.38522 5.39018 5.67033 5.69118 5.72104 5.92143 6.23773 6.30440 6.47441 6.70839 7.52163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.082 3.918 3 C -0.209 4.209 4 C -0.040 4.040 5 O -0.540 6.540 6 Si 0.932 3.068 7 H -0.254 1.254 8 H -0.254 1.254 9 H -0.235 1.235 10 C -0.060 4.060 11 C -0.100 4.100 12 C -0.055 4.055 13 C 0.606 3.394 14 O -0.496 6.496 15 N -0.590 5.590 16 N -0.271 5.271 17 C 0.026 3.974 18 C -0.100 4.100 19 C -0.410 4.410 20 Si 1.032 2.968 21 C -0.451 4.451 22 C -0.443 4.443 23 C -0.261 4.261 24 N -0.538 5.538 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.373 0.627 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.369 0.631 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.051 0.949 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 -4.418 -0.490 5.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.036 4.036 3 C -0.216 4.216 4 C -0.152 4.152 5 O -0.346 6.346 6 Si 0.753 3.247 7 H -0.178 1.178 8 H -0.178 1.178 9 H -0.158 1.158 10 C -0.068 4.068 11 C -0.157 4.157 12 C -0.168 4.168 13 C 0.394 3.606 14 O -0.368 6.368 15 N -0.334 5.334 16 N -0.087 5.087 17 C -0.102 4.102 18 C -0.139 4.139 19 C -0.496 4.496 20 Si 1.225 2.775 21 C -0.559 4.559 22 C -0.552 4.552 23 C -0.435 4.435 24 N -0.136 5.136 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.221 0.779 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.206 0.794 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.211 -3.385 -1.160 4.206 hybrid contribution -1.252 -1.812 0.335 2.228 sum -3.463 -5.197 -0.826 6.299 Atomic orbital electron populations 1.20510 0.87281 1.04092 1.03464 1.20290 0.93607 0.85440 1.04273 1.19491 0.92433 0.95244 1.14427 1.24240 1.04036 0.90700 0.96186 1.86514 1.28272 1.79619 1.40233 0.86061 0.82117 0.79548 0.76957 1.17804 1.17819 1.15785 1.19725 0.94632 0.91126 1.01335 1.20661 0.94877 0.97309 1.02864 1.20008 0.82575 0.93841 1.20376 1.16787 0.87552 0.79808 0.76452 1.90820 1.23937 1.74168 1.47881 1.45501 1.05227 1.05007 1.77653 1.62980 1.24484 1.19377 1.01885 1.22561 0.99159 0.94383 0.94067 1.21186 0.95043 0.98516 0.99130 1.26386 1.04763 1.03721 1.14764 0.79205 0.65562 0.65756 0.66976 1.26121 1.04746 1.12021 1.12976 1.26022 1.13124 1.10650 1.05361 1.28120 1.16692 1.05402 0.93242 1.41842 1.05437 1.08337 1.57937 0.90091 0.91136 0.89315 0.87160 0.77917 0.90632 0.92185 0.89344 0.79400 0.93735 0.90125 0.90786 0.90111 0.90736 0.90002 0.90658 0.91037 0.91283 0.90258 0.91337 0.91328 0.89096 0.93009 0.74825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.28 10.18 36.01 0.37 0.64 16 2 C 0.08 -0.01 7.13 -81.95 -0.58 -0.60 16 3 C -0.21 -0.29 4.64 -105.02 -0.49 -0.78 16 4 C -0.04 -0.02 2.85 36.00 0.10 0.08 16 5 O -0.54 -0.92 12.88 -35.23 -0.45 -1.37 16 6 Si 0.93 0.70 26.40 -169.99 -4.49 -3.79 16 7 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 8 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 9 H -0.24 -0.19 4.94 56.52 0.28 0.09 16 10 C -0.06 -0.15 5.81 -104.16 -0.61 -0.76 16 11 C -0.10 -0.21 7.74 36.01 0.28 0.07 16 12 C -0.06 -0.12 7.05 -81.98 -0.58 -0.69 16 13 C 0.61 2.04 7.89 -12.85 -0.10 1.94 16 14 O -0.50 -3.36 15.13 5.19 0.08 -3.28 16 15 N -0.59 -0.43 4.71 30.26 0.14 -0.29 16 16 N -0.27 -0.25 4.15 -56.97 -0.24 -0.49 16 17 C 0.03 -0.02 5.37 -4.31 -0.02 -0.04 16 18 C -0.10 0.09 5.74 -26.44 -0.15 -0.06 16 19 C -0.41 0.78 5.03 37.64 0.19 0.97 16 20 Si 1.03 -2.29 11.99 -169.99 -2.04 -4.33 16 21 C -0.45 0.87 8.65 101.05 0.87 1.75 16 22 C -0.44 0.06 8.65 101.05 0.87 0.94 16 23 C -0.26 0.16 4.86 60.52 0.29 0.45 16 24 N -0.54 0.42 5.99 -5.70 -0.03 0.39 16 25 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 26 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 27 H 0.09 -0.31 6.82 -51.93 -0.35 -0.66 16 28 H 0.11 -0.10 6.42 -51.93 -0.33 -0.43 16 29 H 0.37 -0.24 6.49 45.56 0.30 0.05 16 30 H 0.08 0.17 7.08 -51.93 -0.37 -0.20 16 31 H 0.06 0.00 5.11 -51.94 -0.27 -0.27 16 32 H 0.09 0.31 6.48 -51.93 -0.34 -0.02 16 33 H 0.37 -0.78 7.96 -185.16 -1.47 -2.25 16 34 H 0.04 -0.08 7.78 -51.93 -0.40 -0.49 16 35 H 0.08 -0.02 8.03 -51.93 -0.42 -0.44 16 36 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 37 H 0.08 0.01 7.96 -51.93 -0.41 -0.40 16 38 H 0.07 -0.17 7.99 -51.93 -0.42 -0.59 16 39 H 0.08 -0.17 7.99 -51.93 -0.42 -0.59 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 41 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 43 H 0.08 0.11 7.96 -51.93 -0.41 -0.30 16 44 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 45 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 46 H 0.09 0.04 7.99 -51.93 -0.41 -0.38 16 47 H 0.05 -0.09 7.92 -51.93 -0.41 -0.50 16 48 H 0.41 -1.62 8.20 -40.82 -0.33 -1.95 16 LS Contribution 374.45 15.07 5.64 5.64 Total: 0.00 -7.84 374.45 -9.67 -17.51 By element: Atomic # 1 Polarization: -5.16 SS G_CDS: -8.73 Total: -13.89 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.45 Total: 3.91 kcal Atomic # 7 Polarization: -0.26 SS G_CDS: -0.13 Total: -0.39 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.38 Total: -4.65 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: -6.53 Total: -8.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -7.84 -9.67 -17.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12297754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.683 kcal (2) G-P(sol) polarization free energy of solvation -7.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds