Wall clock time and date at job start Sun Mar 7 2021 08:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35458 * 125.55994 * 2 1 4 4 C 1.50695 * 126.07134 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47204 * 115.37116 * 4 3 2 6 6 Si 1.86301 * 109.47489 * 235.37764 * 4 3 2 7 7 H 1.48494 * 109.47042 * 63.69106 * 6 4 3 8 8 H 1.48497 * 109.47252 * 183.69440 * 6 4 3 9 9 H 1.48498 * 109.46943 * 303.69286 * 6 4 3 10 10 C 1.39841 * 107.85929 * 179.83993 * 3 2 1 11 11 C 1.50704 * 126.45176 * 180.15797 * 10 3 2 12 12 C 1.37868 * 107.08525 * 0.41275 * 10 3 2 13 13 C 1.46674 * 126.22985 * 179.72791 * 12 10 3 14 14 O 1.21694 * 120.00268 * 359.97438 * 13 12 10 15 15 N 1.34783 * 119.99729 * 180.02562 * 13 12 10 16 16 N 1.36600 * 119.99544 * 184.74461 * 15 13 12 17 17 C 1.46357 * 110.99940 * 235.07253 * 16 15 13 18 18 C 1.52619 * 111.89052 * 156.80786 * 17 16 15 19 19 C 1.53934 * 109.31426 * 76.52424 * 18 17 16 20 20 Si 1.87528 * 106.84814 * 302.79661 * 19 18 17 21 21 C 1.86301 * 110.00420 * 163.09651 * 20 19 18 22 22 C 1.86306 * 109.99968 * 284.40120 * 20 19 18 23 23 C 1.47730 * 110.99636 * 110.72518 * 16 15 13 24 24 N 1.35522 * 125.56606 * 180.29840 * 2 1 3 25 25 H 1.08996 * 109.47264 * 265.11636 * 1 2 3 26 26 H 1.08996 * 109.46746 * 145.11024 * 1 2 3 27 27 H 1.09007 * 109.47240 * 25.11778 * 1 2 3 28 28 H 1.09004 * 109.46836 * 355.37928 * 4 3 2 29 29 H 0.96707 * 113.99300 * 60.00315 * 5 4 3 30 30 H 1.08997 * 109.47134 * 270.32220 * 11 10 3 31 31 H 1.08988 * 109.47376 * 30.32819 * 11 10 3 32 32 H 1.08999 * 109.46521 * 150.32521 * 11 10 3 33 33 H 0.96993 * 120.00233 * 4.73864 * 15 13 12 34 34 H 1.09000 * 108.99729 * 277.42837 * 17 16 15 35 35 H 1.08993 * 108.99757 * 36.26527 * 17 16 15 36 36 H 1.09007 * 109.49973 * 196.47013 * 18 17 16 37 37 H 1.09000 * 109.50082 * 316.57287 * 18 17 16 38 38 H 1.08999 * 109.97406 * 62.12700 * 19 18 17 39 39 H 1.08993 * 109.98017 * 183.37170 * 19 18 17 40 40 H 1.09001 * 109.46967 * 59.99908 * 21 20 19 41 41 H 1.08996 * 109.47078 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.46816 * 300.00116 * 21 20 19 43 43 H 1.09002 * 109.46805 * 59.99829 * 22 20 19 44 44 H 1.09003 * 109.46685 * 179.97438 * 22 20 19 45 45 H 1.09000 * 109.47047 * 300.00081 * 22 20 19 46 46 H 1.08997 * 109.95105 * 303.85188 * 23 16 15 47 47 H 1.08999 * 109.94850 * 65.11564 * 23 16 15 48 48 H 0.96999 * 125.67909 * 359.96607 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1020 0.0000 4 6 1.8199 2.5321 -0.0005 5 8 2.2172 3.1664 1.2168 6 14 2.5718 3.4357 -1.4459 7 1 2.0876 2.8319 -2.7132 8 1 2.1756 4.8660 -1.3959 9 1 4.0515 3.3294 -1.3806 10 6 3.6270 0.6768 0.0037 11 6 4.8485 1.5594 0.0084 12 6 3.6122 -0.7018 -0.0036 13 6 4.7860 -1.5813 -0.0086 14 8 5.9049 -1.1028 -0.0068 15 7 4.6253 -2.9195 -0.0161 16 7 5.7145 -3.7386 0.0771 17 6 5.7569 -4.6839 -1.0394 18 6 7.1703 -5.2003 -1.2945 19 6 7.5285 -6.2511 -0.2282 20 14 7.3373 -5.4186 1.4412 21 6 7.2446 -6.7034 2.7872 22 6 8.7746 -4.2744 1.7510 23 6 5.7388 -4.4412 1.3764 24 7 2.2953 -1.1024 -0.0057 25 1 -0.3633 -0.0875 1.0239 26 1 -0.3633 -0.8429 -0.5878 27 1 -0.3634 0.9305 -0.4362 28 1 0.7332 2.5541 -0.0837 29 1 3.1738 3.1835 1.3573 30 1 5.1428 1.7778 -1.0181 31 1 4.6220 2.4905 0.5275 32 1 5.6643 1.0478 0.5192 33 1 3.7364 -3.3009 -0.0876 34 1 5.1058 -5.5286 -0.8142 35 1 5.3943 -4.1869 -1.9391 36 1 7.2185 -5.6550 -2.2840 37 1 7.8759 -4.3713 -1.2397 38 1 6.8499 -7.1011 -0.3004 39 1 8.5575 -6.5839 -0.3642 40 1 8.1582 -7.2979 2.7855 41 1 7.1341 -6.2105 3.7530 42 1 6.3878 -7.3535 2.6104 43 1 8.8070 -3.5127 0.9720 44 1 8.6546 -3.7952 2.7227 45 1 9.7028 -4.8457 1.7394 46 1 5.7122 -3.7175 2.1911 47 1 4.8866 -5.1169 1.4499 48 1 1.9834 -2.0209 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12297754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:30:58 Heat of formation + Delta-G solvation = -32.693778 kcal Electronic energy + Delta-G solvation = -26545.216522 eV Core-core repulsion = 22953.236360 eV Total energy + Delta-G solvation = -3591.980162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.69691 -40.70197 -38.48247 -37.76218 -35.05262 -33.81965 -33.12677 -31.51361 -29.35013 -29.29133 -28.36391 -27.71719 -27.40288 -26.45724 -24.58603 -22.42977 -21.95702 -20.92711 -20.27056 -19.45992 -18.34952 -17.81824 -16.94091 -16.72000 -16.27537 -15.92216 -15.70784 -15.26898 -14.93475 -14.87466 -14.76079 -14.54301 -14.34448 -14.23309 -14.00057 -13.97997 -13.81340 -13.56144 -13.52636 -13.43753 -13.20671 -13.15886 -13.11137 -13.00632 -12.64776 -12.33065 -12.11438 -12.06651 -11.99416 -11.60100 -11.28299 -10.84591 -10.81305 -10.54503 -10.36981 -10.25111 -9.75643 -9.57850 -9.01420 0.34709 1.16047 1.36824 1.45202 1.53084 1.70203 1.79090 1.89356 1.99269 2.05563 2.14362 2.28193 2.59930 3.32233 3.65562 3.75875 3.83850 3.95550 3.97257 4.11780 4.14530 4.36980 4.39109 4.49439 4.50106 4.57798 4.65163 4.70299 4.75742 4.76904 4.79083 4.79225 4.83000 4.83873 4.89577 4.96148 5.06184 5.08664 5.13260 5.26783 5.29187 5.45859 5.56412 5.65108 5.66282 5.77580 5.83055 6.13481 6.32818 6.48565 6.71956 7.41401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.093 3.907 3 C -0.228 4.228 4 C -0.035 4.035 5 O -0.554 6.554 6 Si 0.955 3.045 7 H -0.267 1.267 8 H -0.270 1.270 9 H -0.243 1.243 10 C -0.077 4.077 11 C -0.099 4.099 12 C -0.073 4.073 13 C 0.603 3.397 14 O -0.543 6.543 15 N -0.579 5.579 16 N -0.297 5.297 17 C 0.026 3.974 18 C -0.103 4.103 19 C -0.412 4.412 20 Si 1.094 2.906 21 C -0.454 4.454 22 C -0.465 4.465 23 C -0.272 4.272 24 N -0.524 5.524 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.380 0.620 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.385 0.615 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 -6.125 -0.347 7.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.026 4.026 3 C -0.234 4.234 4 C -0.147 4.147 5 O -0.361 6.361 6 Si 0.779 3.221 7 H -0.192 1.192 8 H -0.195 1.195 9 H -0.166 1.166 10 C -0.086 4.086 11 C -0.156 4.156 12 C -0.186 4.186 13 C 0.392 3.608 14 O -0.418 6.418 15 N -0.323 5.323 16 N -0.113 5.113 17 C -0.101 4.101 18 C -0.142 4.142 19 C -0.498 4.498 20 Si 1.282 2.718 21 C -0.563 4.563 22 C -0.571 4.571 23 C -0.443 4.443 24 N -0.122 5.122 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.229 0.771 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.224 0.776 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -4.127 -5.117 -1.016 6.652 hybrid contribution -0.658 -1.254 0.281 1.443 sum -4.785 -6.371 -0.735 8.001 Atomic orbital electron populations 1.20663 0.84901 1.05480 1.04414 1.20766 0.94930 0.84956 1.01983 1.19612 0.92092 0.96118 1.15626 1.24229 1.04975 0.90102 0.95349 1.86483 1.29128 1.79795 1.40694 0.85738 0.81508 0.78257 0.76566 1.19161 1.19514 1.16583 1.19914 0.95229 0.91603 1.01826 1.20619 0.94561 0.98027 1.02379 1.19849 0.83328 0.93668 1.21739 1.17031 0.87335 0.80615 0.75820 1.90791 1.25623 1.75096 1.50316 1.45332 1.06113 1.04390 1.76461 1.62955 1.25136 1.20204 1.03004 1.22581 0.99655 0.94589 0.93285 1.21207 0.94560 0.98368 1.00042 1.26419 1.05397 1.03807 1.14196 0.78283 0.62729 0.64097 0.66671 1.26151 1.05320 1.12102 1.12704 1.26341 1.15466 1.11079 1.04208 1.28325 1.18712 1.05313 0.91994 1.41783 1.04284 1.09233 1.56898 0.89310 0.89209 0.88441 0.85395 0.77077 0.91342 0.90398 0.91316 0.77569 0.91778 0.90765 0.90060 0.91848 0.89337 0.89594 0.90332 0.91245 0.90399 0.92403 0.92055 0.90843 0.90589 0.91299 0.73010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.78 10.18 71.24 0.72 1.50 16 2 C 0.09 -0.12 7.13 41.35 0.29 0.17 16 3 C -0.23 -0.62 4.64 -20.12 -0.09 -0.71 16 4 C -0.04 -0.03 2.85 71.23 0.20 0.17 16 5 O -0.55 -1.89 12.88 -148.98 -1.92 -3.80 16 6 Si 0.95 2.13 26.40 68.60 1.81 3.94 16 7 H -0.27 -1.12 7.11 99.48 0.71 -0.42 16 8 H -0.27 -1.26 7.11 99.48 0.71 -0.55 16 9 H -0.24 -0.76 4.94 99.48 0.49 -0.26 16 10 C -0.08 -0.48 5.81 -19.56 -0.11 -0.60 16 11 C -0.10 -0.65 7.74 71.24 0.55 -0.10 16 12 C -0.07 -0.38 7.05 40.35 0.28 -0.09 16 13 C 0.60 5.15 7.89 86.44 0.68 5.83 16 14 O -0.54 -9.05 15.13 -4.33 -0.07 -9.12 16 15 N -0.58 -1.28 4.71 -176.38 -0.83 -2.11 16 16 N -0.30 -0.79 4.15 -334.16 -1.39 -2.17 16 17 C 0.03 -0.03 5.37 86.28 0.46 0.43 16 18 C -0.10 0.16 5.74 30.78 0.18 0.34 16 19 C -0.41 1.91 5.03 72.30 0.36 2.28 16 20 Si 1.09 -4.88 11.99 68.60 0.82 -4.05 16 21 C -0.45 2.26 8.65 113.37 0.98 3.24 16 22 C -0.47 -0.72 8.65 113.37 0.98 0.26 16 23 C -0.27 0.28 4.86 127.53 0.62 0.90 16 24 N -0.52 1.13 5.99 -171.94 -1.03 0.09 16 25 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H 0.10 -0.90 6.82 -2.38 -0.02 -0.92 16 28 H 0.13 -0.38 6.42 -2.39 -0.02 -0.40 16 29 H 0.38 -0.27 6.49 -74.05 -0.48 -0.75 16 30 H 0.07 0.50 7.08 -2.39 -0.02 0.48 16 31 H 0.08 0.13 5.11 -2.39 -0.01 0.11 16 32 H 0.07 0.72 6.48 -2.39 -0.02 0.71 16 33 H 0.38 -1.73 7.96 -215.51 -1.72 -3.45 16 34 H 0.06 -0.34 7.78 -2.39 -0.02 -0.36 16 35 H 0.07 -0.01 8.03 -2.39 -0.02 -0.03 16 36 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 37 H 0.06 0.12 7.96 -2.39 -0.02 0.11 16 38 H 0.09 -0.61 7.99 -2.39 -0.02 -0.63 16 39 H 0.09 -0.43 7.99 -2.39 -0.02 -0.45 16 40 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 41 H 0.07 -0.29 7.96 -2.39 -0.02 -0.30 16 42 H 0.08 -0.49 7.96 -2.39 -0.02 -0.50 16 43 H 0.06 0.34 7.96 -2.39 -0.02 0.32 16 44 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 45 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 46 H 0.08 0.15 7.99 -2.39 -0.02 0.14 16 47 H 0.07 -0.33 7.92 -2.39 -0.02 -0.35 16 48 H 0.43 -3.89 8.20 -92.71 -0.76 -4.65 16 Total: 0.00 -20.25 374.45 2.09 -18.16 By element: Atomic # 1 Polarization: -13.13 SS G_CDS: -1.43 Total: -14.56 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.12 Total: 13.62 kcal Atomic # 7 Polarization: -0.94 SS G_CDS: -3.25 Total: -4.19 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.98 Total: -12.92 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.63 Total: -0.11 kcal Total: -20.25 2.09 -18.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12297754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.530 kcal (2) G-P(sol) polarization free energy of solvation -20.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds