Wall clock time and date at job start Sun Mar 7 2021 08:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35709 * 117.00134 * 2 1 4 4 C 1.38684 * 119.86463 * 359.97438 * 3 2 1 5 5 C 1.38439 * 120.03836 * 179.97438 * 4 3 2 6 6 O 1.35657 * 120.12475 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99805 * 0.02562 * 6 5 4 8 8 C 1.40305 * 119.75543 * 0.02562 * 5 4 3 9 9 C 1.47303 * 120.13276 * 180.02562 * 8 5 4 10 10 O 1.21620 * 119.99809 * 359.97438 * 9 8 5 11 11 N 1.34775 * 119.99741 * 180.02562 * 9 8 5 12 12 N 1.36603 * 119.99978 * 185.02074 * 11 9 8 13 13 C 1.46358 * 110.99602 * 124.54393 * 12 11 9 14 14 C 1.52624 * 111.88879 * 203.19759 * 13 12 11 15 15 C 1.53934 * 109.31335 * 283.47944 * 14 13 12 16 16 Si 1.87528 * 106.84527 * 57.20700 * 15 14 13 17 17 C 1.86299 * 110.00676 * 75.50232 * 16 15 14 18 18 C 1.86304 * 110.00200 * 196.80562 * 16 15 14 19 19 C 1.47719 * 110.99991 * 248.89873 * 12 11 9 20 20 C 1.39853 * 119.72998 * 0.27757 * 8 5 4 21 21 C 1.37548 * 119.96428 * 359.42271 * 20 8 5 22 22 C 1.50701 * 119.88100 * 180.29507 * 21 20 8 23 23 O 1.42899 * 109.47273 * 255.27906 * 22 21 20 24 24 Si 1.86297 * 109.46775 * 15.28399 * 22 21 20 25 25 H 1.48496 * 109.47618 * 59.99841 * 24 22 21 26 26 H 1.48506 * 109.46881 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47295 * 299.99246 * 24 22 21 28 28 H 1.09007 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47225 * 300.00125 * 1 2 3 30 30 H 1.09000 * 109.46890 * 60.00858 * 1 2 3 31 31 H 1.08001 * 119.98195 * 359.97420 * 4 3 2 32 32 H 1.08997 * 109.46849 * 299.99928 * 7 6 5 33 33 H 1.08998 * 109.47029 * 60.00251 * 7 6 5 34 34 H 1.09000 * 109.46927 * 179.97438 * 7 6 5 35 35 H 0.97003 * 120.00072 * 5.02837 * 11 9 8 36 36 H 1.08996 * 108.99315 * 82.57931 * 13 12 11 37 37 H 1.08993 * 108.93458 * 323.77715 * 13 12 11 38 38 H 1.09001 * 109.49514 * 163.53014 * 14 13 12 39 39 H 1.08998 * 109.52630 * 43.44727 * 14 13 12 40 40 H 1.08995 * 109.97839 * 297.87452 * 15 14 13 41 41 H 1.08995 * 110.05186 * 176.57804 * 15 14 13 42 42 H 1.08999 * 109.46696 * 59.99671 * 17 16 15 43 43 H 1.09005 * 109.46791 * 300.00145 * 17 16 15 44 44 H 1.08998 * 109.47376 * 179.97438 * 17 16 15 45 45 H 1.09002 * 109.46894 * 298.69043 * 18 16 15 46 46 H 1.09003 * 109.46997 * 58.68270 * 18 16 15 47 47 H 1.08998 * 109.47381 * 178.68297 * 18 16 15 48 48 H 1.08996 * 109.95158 * 56.14276 * 19 12 11 49 49 H 1.09001 * 109.94669 * 294.88007 * 19 12 11 50 50 H 1.08004 * 120.01939 * 179.69931 * 20 8 5 51 51 H 1.09006 * 109.46483 * 135.28158 * 22 21 20 52 52 H 0.96706 * 113.99661 * 60.00423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2871 2.3705 -0.0005 5 6 1.9119 3.6059 0.0000 6 8 1.1721 4.7430 -0.0011 7 6 -0.2490 4.5924 -0.0021 8 6 3.3131 3.6775 0.0005 9 6 3.9865 4.9876 0.0017 10 8 3.3277 6.0100 0.0017 11 7 5.3327 5.0533 0.0017 12 7 5.9574 6.2635 0.1063 13 6 6.8912 6.2760 1.2332 14 6 7.1659 7.6932 1.7288 15 6 8.1335 8.3935 0.7578 16 14 7.3313 8.3471 -0.9365 17 6 5.9585 9.6034 -1.0264 18 6 8.6021 8.6974 -2.2531 19 6 6.6355 6.6201 -1.1567 20 6 4.0677 2.5001 -0.0054 21 6 3.4353 1.2787 0.0004 22 6 4.2504 0.0111 0.0007 23 8 4.2151 -0.5782 -1.3006 24 14 6.0130 0.4066 0.4560 25 1 6.0497 1.0190 1.8083 26 1 6.8162 -0.8426 0.4570 27 1 6.5784 1.3582 -0.5339 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.2087 2.3111 -0.0014 32 1 -0.5554 4.0428 -0.8921 33 1 -0.5568 4.0435 0.8878 34 1 -0.7186 5.5760 -0.0024 35 1 5.8579 4.2411 -0.0727 36 1 7.8309 5.8211 0.9204 37 1 6.4682 5.6905 2.0494 38 1 7.6140 7.6509 2.7216 39 1 6.2304 8.2506 1.7753 40 1 9.0855 7.8632 0.7337 41 1 8.2908 9.4267 1.0672 42 1 6.3652 10.5991 -0.8493 43 1 5.2087 9.3770 -0.2683 44 1 5.4989 9.5694 -2.0141 45 1 9.0173 9.6938 -2.1014 46 1 9.4008 7.9580 -2.1930 47 1 8.1318 8.6453 -3.2351 48 1 5.9200 6.6095 -1.9789 49 1 7.4436 5.9164 -1.3565 50 1 5.1466 2.5499 -0.0099 51 1 3.8353 -0.6874 0.7274 52 1 4.5699 -0.0111 -1.9989 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12297780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:34:20 Heat of formation + Delta-G solvation = -105.825906 kcal Electronic energy + Delta-G solvation = -32841.922116 eV Core-core repulsion = 28546.606094 eV Total energy + Delta-G solvation = -4295.316022 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.12392 -40.80095 -40.02243 -38.61218 -38.26372 -36.97981 -34.90472 -32.53569 -32.24790 -30.82636 -29.31979 -28.98068 -28.34154 -28.14322 -27.52727 -26.14786 -25.36449 -24.07326 -22.74650 -21.83069 -21.55362 -20.12312 -18.95127 -18.64415 -17.99368 -17.68936 -17.23656 -16.77403 -16.73519 -16.56476 -16.47435 -15.84780 -15.77886 -15.48382 -15.35611 -15.20425 -14.81187 -14.75808 -14.53440 -14.36588 -14.03380 -13.95983 -13.79246 -13.54633 -13.48544 -13.30908 -13.18123 -13.10319 -12.97320 -12.66741 -12.53119 -12.52158 -12.25364 -12.12485 -12.02202 -11.95205 -11.78751 -11.66081 -11.28871 -10.79185 -10.75180 -10.38078 -10.30474 -10.16336 -9.94768 -9.68464 -9.21779 -0.29175 0.04766 1.13311 1.36867 1.43968 1.50049 1.73740 1.84946 1.90005 1.92770 2.10639 2.15130 2.18042 2.59200 2.63933 3.32195 3.44722 3.50130 3.61350 3.72992 3.81855 4.01751 4.08790 4.11719 4.19757 4.22503 4.27845 4.28788 4.32081 4.43187 4.54264 4.56450 4.63493 4.68984 4.69832 4.72080 4.75799 4.81156 4.82816 4.85827 4.86111 4.89080 4.93828 5.00562 5.11762 5.26305 5.31952 5.48923 5.58860 5.67026 5.84530 6.02871 6.22378 6.28959 6.45297 6.75321 7.54061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.308 6.308 3 C 0.220 3.780 4 C -0.308 4.308 5 C 0.220 3.780 6 O -0.305 6.305 7 C 0.010 3.990 8 C -0.224 4.224 9 C 0.577 3.423 10 O -0.541 6.541 11 N -0.582 5.582 12 N -0.298 5.298 13 C 0.022 3.978 14 C -0.102 4.102 15 C -0.410 4.410 16 Si 1.089 2.911 17 C -0.464 4.464 18 C -0.452 4.452 19 C -0.274 4.274 20 C -0.010 4.010 21 C -0.201 4.201 22 C -0.065 4.065 23 O -0.550 6.550 24 Si 0.963 3.037 25 H -0.250 1.250 26 H -0.267 1.267 27 H -0.234 1.234 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.166 0.834 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.385 0.615 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.151 0.849 51 H 0.115 0.885 52 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 -2.610 0.030 2.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.220 6.220 3 C 0.171 3.829 4 C -0.328 4.328 5 C 0.171 3.829 6 O -0.215 6.215 7 C -0.084 4.084 8 C -0.229 4.229 9 C 0.366 3.634 10 O -0.417 6.417 11 N -0.328 5.328 12 N -0.114 5.114 13 C -0.105 4.105 14 C -0.141 4.141 15 C -0.496 4.496 16 Si 1.278 2.722 17 C -0.569 4.569 18 C -0.561 4.561 19 C -0.446 4.446 20 C -0.029 4.029 21 C -0.202 4.202 22 C -0.175 4.175 23 O -0.356 6.356 24 Si 0.785 3.215 25 H -0.174 1.174 26 H -0.192 1.192 27 H -0.157 1.157 28 H 0.139 0.861 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.168 0.832 51 H 0.133 0.867 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.281 -1.883 0.686 2.378 hybrid contribution -0.336 -0.643 -0.613 0.950 sum 0.945 -2.526 0.073 2.698 Atomic orbital electron populations 1.23487 0.76075 1.06102 1.02635 1.86149 1.23610 1.25852 1.86340 1.18856 0.91516 0.84208 0.88286 1.21435 1.02209 0.90496 1.18614 1.18918 0.89978 0.85668 0.88339 1.86376 1.20827 1.28365 1.85980 1.23486 0.76560 1.05626 1.02748 1.19061 0.91063 0.93197 1.19619 1.17933 0.81088 0.88472 0.75885 1.90789 1.64896 1.36954 1.49087 1.45416 1.05612 1.05051 1.76674 1.62934 1.31396 1.12710 1.04410 1.22638 0.94929 0.99902 0.93039 1.21199 0.99714 0.93508 0.99648 1.26385 1.04274 1.03918 1.15056 0.78354 0.64717 0.62226 0.66884 1.26326 1.14192 1.12718 1.03695 1.26128 1.11867 1.05836 1.12254 1.28334 1.02684 1.20261 0.93273 1.20945 0.99724 0.89561 0.92639 1.19570 0.91659 0.96046 1.12908 1.24851 1.09285 0.94026 0.89302 1.86528 1.86988 1.45406 1.16712 0.85558 0.74228 0.80396 0.81308 1.17369 1.19212 1.15710 0.86148 0.91102 0.91347 0.81660 0.90921 0.90875 0.86953 0.77475 0.91695 0.90547 0.89914 0.91916 0.89245 0.89529 0.90817 0.92516 0.92174 0.90291 0.90337 0.91266 0.90707 0.91328 0.83166 0.86667 0.76524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 2 O -0.31 -0.61 9.80 -90.30 -0.88 -1.50 16 3 C 0.22 0.63 6.67 22.61 0.15 0.78 16 4 C -0.31 -0.71 8.01 22.42 0.18 -0.53 16 5 C 0.22 1.65 6.70 22.82 0.15 1.80 16 6 O -0.30 -2.99 8.56 -68.76 -0.59 -3.57 16 7 C 0.01 0.00 9.81 113.37 1.11 1.11 16 8 C -0.22 -1.67 5.89 -20.00 -0.12 -1.79 16 9 C 0.58 6.77 7.86 86.63 0.68 7.45 16 10 O -0.54 -11.01 15.48 16.87 0.26 -10.74 16 11 N -0.58 -3.31 4.65 -175.97 -0.82 -4.13 16 12 N -0.30 -1.56 4.15 -334.16 -1.39 -2.94 16 13 C 0.02 0.01 5.38 86.28 0.46 0.48 16 14 C -0.10 0.04 5.74 30.78 0.18 0.22 16 15 C -0.41 1.49 5.04 72.30 0.36 1.86 16 16 Si 1.09 -3.28 11.99 68.60 0.82 -2.46 16 17 C -0.46 -1.36 8.65 113.37 0.98 -0.38 16 18 C -0.45 1.80 8.65 113.37 0.98 2.78 16 19 C -0.27 -0.34 4.86 127.53 0.62 0.28 16 20 C -0.01 -0.02 8.13 22.50 0.18 0.17 16 21 C -0.20 -0.37 5.27 -19.80 -0.10 -0.47 16 22 C -0.06 0.01 2.37 71.24 0.17 0.18 16 23 O -0.55 -0.66 12.88 -148.98 -1.92 -2.57 16 24 Si 0.96 -2.54 25.50 68.60 1.75 -0.79 16 25 H -0.25 0.44 7.11 99.48 0.71 1.15 16 26 H -0.27 -0.23 7.11 99.48 0.71 0.48 16 27 H -0.23 1.34 6.72 99.48 0.67 2.01 16 28 H 0.12 -0.98 8.14 -2.38 -0.02 -1.00 16 29 H 0.07 -0.53 7.65 -2.39 -0.02 -0.55 16 30 H 0.07 -0.48 7.65 -2.39 -0.02 -0.49 16 31 H 0.17 -0.51 4.50 -2.91 -0.01 -0.52 16 32 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 33 H 0.07 -0.29 7.66 -2.39 -0.02 -0.30 16 34 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.38 -0.14 6.86 -215.49 -1.48 -1.62 16 36 H 0.06 -0.24 7.78 -2.39 -0.02 -0.25 16 37 H 0.08 0.10 8.03 -2.39 -0.02 0.08 16 38 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 40 H 0.09 -0.54 7.99 -2.39 -0.02 -0.56 16 41 H 0.09 -0.37 7.99 -2.39 -0.02 -0.39 16 42 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 43 H 0.06 0.42 7.96 -2.38 -0.02 0.40 16 44 H 0.06 0.24 7.96 -2.39 -0.02 0.22 16 45 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 46 H 0.08 -0.42 7.96 -2.39 -0.02 -0.43 16 47 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 48 H 0.07 0.34 7.99 -2.39 -0.02 0.32 16 49 H 0.07 -0.18 7.92 -2.39 -0.02 -0.20 16 50 H 0.15 -0.48 3.21 -2.91 -0.01 -0.49 16 51 H 0.12 0.01 7.82 -2.38 -0.02 -0.01 16 52 H 0.39 -2.23 8.70 -74.05 -0.64 -2.87 16 Total: 0.00 -23.79 412.32 3.88 -19.91 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: -0.46 Total: -6.18 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 7.10 Total: 14.98 kcal Atomic # 7 Polarization: -4.86 SS G_CDS: -2.20 Total: -7.07 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -3.13 Total: -18.39 kcal Atomic # 14 Polarization: -5.82 SS G_CDS: 2.57 Total: -3.25 kcal Total: -23.79 3.88 -19.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12297780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.918 kcal (2) G-P(sol) polarization free energy of solvation -23.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds