Wall clock time and date at job start Sun Mar 7 2021 08:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86297 * 110.05860 * 2 1 4 4 C 1.87519 * 110.00380 * 121.36136 * 2 1 3 5 5 C 1.53936 * 106.84838 * 75.50702 * 4 2 1 6 6 C 1.52619 * 109.31318 * 57.20090 * 5 4 2 7 7 N 1.46360 * 111.89276 * 283.48077 * 6 5 4 8 8 N 1.36601 * 111.00124 * 203.19328 * 7 6 5 9 9 C 1.34778 * 119.99569 * 124.56477 * 8 7 6 10 10 O 1.21280 * 120.00271 * 5.00918 * 9 8 7 11 11 C 1.50704 * 119.99659 * 185.00577 * 9 8 7 12 12 C 1.50700 * 109.46754 * 180.02562 * 11 9 8 13 13 C 1.38240 * 119.99986 * 269.72231 * 12 11 9 14 14 C 1.38229 * 119.99707 * 179.76697 * 13 12 11 15 15 C 1.38235 * 120.00308 * 0.51650 * 14 13 12 16 16 C 1.50699 * 120.00197 * 179.72349 * 15 14 13 17 17 O 1.42904 * 109.47188 * 245.01866 * 16 15 14 18 18 Si 1.86301 * 109.47071 * 5.01931 * 16 15 14 19 19 H 1.48496 * 109.47014 * 60.00339 * 18 16 15 20 20 H 1.48504 * 109.46952 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47072 * 299.99857 * 18 16 15 22 22 C 1.38242 * 120.00009 * 359.74022 * 15 14 13 23 23 C 1.38230 * 119.99446 * 0.02562 * 22 15 14 24 24 C 1.47721 * 111.30499 * 79.01856 * 7 6 5 25 25 H 1.08998 * 109.47241 * 298.62950 * 1 2 3 26 26 H 1.08994 * 109.47549 * 58.63733 * 1 2 3 27 27 H 1.09001 * 109.46977 * 178.64056 * 1 2 3 28 28 H 1.09003 * 109.47387 * 181.36200 * 3 2 1 29 29 H 1.09006 * 109.47586 * 301.36485 * 3 2 1 30 30 H 1.09003 * 109.47278 * 61.36169 * 3 2 1 31 31 H 1.08998 * 109.97543 * 194.83580 * 4 2 1 32 32 H 1.08996 * 109.98214 * 316.08342 * 4 2 1 33 33 H 1.08996 * 109.49941 * 177.15600 * 5 4 2 34 34 H 1.09006 * 109.49549 * 297.22076 * 5 4 2 35 35 H 1.09002 * 108.99798 * 44.09792 * 6 5 4 36 36 H 1.09000 * 109.00079 * 162.85847 * 6 5 4 37 37 H 0.96991 * 120.00168 * 304.56525 * 8 7 6 38 38 H 1.08995 * 109.47044 * 300.00075 * 11 9 8 39 39 H 1.08996 * 109.46718 * 60.00309 * 11 9 8 40 40 H 1.07995 * 120.00132 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.99928 * 180.23643 * 14 13 12 42 42 H 1.08998 * 109.47179 * 125.02108 * 16 15 14 43 43 H 0.96702 * 113.99827 * 59.99529 * 17 16 15 44 44 H 1.07993 * 119.99990 * 179.97438 * 22 15 14 45 45 H 1.08002 * 119.99691 * 179.97438 * 23 22 15 46 46 H 1.08998 * 109.95157 * 180.32059 * 24 7 6 47 47 H 1.08994 * 109.95212 * 59.06471 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9170 1.5046 5 6 2.3107 -2.4189 1.2280 6 6 3.0399 -2.7932 -0.0594 7 7 2.3060 -2.3582 -1.2486 8 7 2.6568 -3.1017 -2.3396 9 6 1.7091 -3.7464 -3.0486 10 8 0.5376 -3.5941 -2.7741 11 6 2.1052 -4.6565 -4.1826 12 6 0.8680 -5.2487 -4.8069 13 6 0.3617 -6.4459 -4.3363 14 6 -0.7758 -6.9867 -4.9057 15 6 -1.4011 -6.3358 -5.9528 16 6 -2.6377 -6.9285 -6.5776 17 8 -2.3607 -7.2893 -7.9324 18 14 -3.1499 -8.4445 -5.6236 19 1 -3.4378 -8.0696 -4.2159 20 1 -4.3682 -9.0289 -6.2397 21 1 -2.0519 -9.4436 -5.6551 22 6 -0.8918 -5.1412 -6.4269 23 6 0.2430 -4.5980 -5.8542 24 6 2.5043 -0.9169 -1.5043 25 1 -0.3633 0.4924 0.9020 26 1 -0.3634 0.5348 -0.8774 27 1 -0.3633 -1.0274 -0.0244 28 1 3.5917 1.7389 -0.0244 29 1 2.1242 2.2748 -0.8775 30 1 2.1640 2.2602 0.9020 31 1 3.5624 -0.6989 1.6506 32 1 1.9385 -0.6239 2.3888 33 1 2.7171 -2.9971 2.0577 34 1 1.2476 -2.6347 1.1204 35 1 4.0241 -2.3247 -0.0588 36 1 3.1639 -3.8756 -0.0952 37 1 3.5878 -3.1656 -2.6039 38 1 2.6524 -4.0854 -4.9326 39 1 2.7391 -5.4570 -3.8015 40 1 0.8526 -6.9566 -3.5211 41 1 -1.1736 -7.9201 -4.5356 42 1 -3.4437 -6.1951 -6.5545 43 1 -1.6521 -7.9401 -8.0290 44 1 -1.3800 -4.6329 -7.2451 45 1 0.6412 -3.6650 -6.2249 46 1 1.9446 -0.6158 -2.3898 47 1 3.5645 -0.7063 -1.6440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_12335836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:34:48 Heat of formation + Delta-G solvation = -52.041054 kcal Electronic energy + Delta-G solvation = -25043.813812 eV Core-core repulsion = 21543.732079 eV Total energy + Delta-G solvation = -3500.081733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.163 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16471 -40.28074 -38.49077 -37.48659 -34.88052 -33.99548 -31.89974 -31.74572 -29.50303 -29.36376 -28.41098 -27.62088 -25.94141 -24.49972 -23.77825 -22.23174 -21.85733 -21.22694 -18.68072 -18.35719 -17.90515 -17.09176 -16.81101 -16.54101 -16.25972 -15.92721 -15.37274 -15.24984 -14.97869 -14.88882 -14.70587 -14.49326 -14.40263 -14.16919 -14.10374 -13.84987 -13.58989 -13.29772 -13.19332 -13.17231 -13.12341 -12.94753 -12.83703 -12.20555 -12.11950 -12.10173 -12.05959 -11.90922 -11.48578 -11.27525 -10.87353 -10.66223 -10.40569 -10.35045 -10.07006 -9.78682 -9.72223 -9.54146 0.30009 0.53906 1.21415 1.41001 1.47991 1.58492 1.72037 1.80254 1.82354 1.96971 2.08898 2.53348 2.81686 3.40038 3.51563 3.63894 3.80047 3.88682 3.91109 3.95193 4.07652 4.12666 4.26998 4.36995 4.40860 4.45526 4.52063 4.58075 4.63561 4.64526 4.65060 4.68991 4.75547 4.80403 4.88065 4.93373 4.99158 5.05580 5.14011 5.20742 5.34262 5.41027 5.44497 5.61482 5.65079 5.69082 5.76781 6.06963 6.36373 6.47331 6.59640 7.62960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.030 2.970 3 C -0.450 4.450 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.027 3.973 7 N -0.276 5.276 8 N -0.591 5.591 9 C 0.528 3.472 10 O -0.501 6.501 11 C -0.100 4.100 12 C -0.062 4.062 13 C -0.098 4.098 14 C -0.124 4.124 15 C -0.119 4.119 16 C -0.081 4.081 17 O -0.539 6.539 18 Si 0.950 3.050 19 H -0.250 1.250 20 H -0.255 1.255 21 H -0.253 1.253 22 C -0.088 4.088 23 C -0.103 4.103 24 C -0.259 4.259 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.377 0.623 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.376 0.624 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.089 0.911 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 0.416 1.034 5.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.223 2.777 3 C -0.558 4.558 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.101 4.101 7 N -0.092 5.092 8 N -0.336 5.336 9 C 0.314 3.686 10 O -0.373 6.373 11 C -0.141 4.141 12 C -0.062 4.062 13 C -0.116 4.116 14 C -0.141 4.141 15 C -0.119 4.119 16 C -0.191 4.191 17 O -0.344 6.344 18 Si 0.773 3.227 19 H -0.173 1.173 20 H -0.179 1.179 21 H -0.176 1.176 22 C -0.106 4.106 23 C -0.121 4.121 24 C -0.433 4.433 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.215 0.785 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.223 0.777 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.108 0.892 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.343 0.076 1.624 3.717 hybrid contribution 2.157 0.251 -0.339 2.198 sum 5.500 0.327 1.285 5.658 Atomic orbital electron populations 1.26022 1.19841 1.05200 1.04058 0.79229 0.68014 0.65576 0.64889 1.26121 1.06264 1.18626 1.04826 1.26374 1.06092 1.02702 1.14436 1.21182 1.01905 0.95829 0.94990 1.22547 0.95885 1.01429 0.90263 1.62989 1.52406 0.99718 0.94088 1.45675 1.09260 1.50837 1.27831 1.20452 0.85773 0.79903 0.82492 1.90740 1.17639 1.61709 1.67176 1.20664 0.97320 0.99374 0.96744 1.19230 0.96049 0.94903 0.96063 1.20880 0.96079 0.95500 0.99177 1.20978 0.96392 0.99929 0.96828 1.20279 0.97822 0.96549 0.97268 1.24977 0.97695 1.08080 0.88382 1.86519 1.59261 1.64755 1.23824 0.85674 0.80755 0.76954 0.79279 1.17339 1.17923 1.17636 1.20952 0.95611 0.94753 0.99266 1.21019 0.95772 0.99286 0.96032 1.28049 1.04330 0.93618 1.17270 0.91412 0.91382 0.90345 0.91255 0.91059 0.90718 0.90713 0.90091 0.90855 0.90283 0.93717 0.90172 0.78495 0.87807 0.87697 0.85877 0.86250 0.86465 0.77743 0.85466 0.85966 0.89197 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.11 8.65 101.05 0.87 0.76 16 2 Si 1.03 -2.04 11.99 -169.99 -2.04 -4.08 16 3 C -0.45 0.79 8.65 101.05 0.87 1.66 16 4 C -0.41 0.71 5.04 37.65 0.19 0.90 16 5 C -0.10 0.08 5.74 -26.44 -0.15 -0.07 16 6 C 0.03 -0.02 5.38 -4.31 -0.02 -0.04 16 7 N -0.28 -0.23 4.15 -56.97 -0.24 -0.46 16 8 N -0.59 0.01 4.71 31.22 0.15 0.15 16 9 C 0.53 1.00 7.92 -10.98 -0.09 0.92 16 10 O -0.50 -3.33 16.36 5.56 0.09 -3.24 16 11 C -0.10 0.12 5.83 -29.03 -0.17 -0.05 16 12 C -0.06 -0.08 4.37 -104.62 -0.46 -0.54 16 13 C -0.10 -0.15 9.70 -39.58 -0.38 -0.54 16 14 C -0.12 -0.21 8.67 -39.59 -0.34 -0.56 16 15 C -0.12 -0.21 5.35 -104.62 -0.56 -0.77 16 16 C -0.08 -0.06 2.80 36.01 0.10 0.04 16 17 O -0.54 -0.57 12.83 -35.23 -0.45 -1.02 16 18 Si 0.95 0.40 25.14 -169.99 -4.27 -3.87 16 19 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 20 H -0.26 -0.44 7.11 56.52 0.40 -0.04 16 21 H -0.25 -0.07 7.04 56.52 0.40 0.33 16 22 C -0.09 -0.17 9.69 -39.58 -0.38 -0.55 16 23 C -0.10 -0.16 9.70 -39.59 -0.38 -0.55 16 24 C -0.26 0.13 4.86 60.52 0.29 0.42 16 25 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 26 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 27 H 0.08 0.15 7.96 -51.93 -0.41 -0.26 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.16 7.99 -51.93 -0.42 -0.58 16 32 H 0.08 -0.15 7.99 -51.93 -0.42 -0.57 16 33 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 34 H 0.08 0.02 7.96 -51.93 -0.41 -0.39 16 35 H 0.04 -0.08 7.78 -51.93 -0.40 -0.49 16 36 H 0.08 -0.06 8.03 -51.93 -0.42 -0.48 16 37 H 0.38 -1.10 8.83 -185.16 -1.63 -2.73 16 38 H 0.10 -0.35 8.08 -51.93 -0.42 -0.77 16 39 H 0.10 -0.36 8.08 -51.93 -0.42 -0.78 16 40 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 41 H 0.12 0.05 4.87 -52.48 -0.26 -0.20 16 42 H 0.12 0.02 7.96 -51.93 -0.41 -0.40 16 43 H 0.38 -0.84 8.70 45.56 0.40 -0.44 16 44 H 0.13 0.13 8.06 -52.49 -0.42 -0.29 16 45 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 46 H 0.09 0.05 7.99 -51.93 -0.41 -0.36 16 47 H 0.05 -0.08 7.92 -51.93 -0.41 -0.50 16 LS Contribution 381.08 15.07 5.74 5.74 Total: 0.00 -8.22 381.08 -10.24 -18.45 By element: Atomic # 1 Polarization: -4.11 SS G_CDS: -8.61 Total: -12.72 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.61 Total: 1.05 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -0.09 Total: -0.31 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.36 Total: -4.26 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: -6.31 Total: -7.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -8.22 -10.24 -18.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12335836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.587 kcal (2) G-P(sol) polarization free energy of solvation -8.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds