Wall clock time and date at job start Sun Mar 7 2021 08:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86297 * 110.05860 * 2 1 4 4 C 1.87519 * 110.00380 * 121.36136 * 2 1 3 5 5 C 1.53936 * 106.84838 * 75.50702 * 4 2 1 6 6 C 1.52619 * 109.31318 * 57.20090 * 5 4 2 7 7 N 1.46360 * 111.89276 * 283.48077 * 6 5 4 8 8 N 1.36601 * 111.00124 * 203.19328 * 7 6 5 9 9 C 1.34778 * 119.99569 * 124.56477 * 8 7 6 10 10 O 1.21280 * 120.00271 * 5.00918 * 9 8 7 11 11 C 1.50704 * 119.99659 * 185.00577 * 9 8 7 12 12 C 1.50700 * 109.46754 * 180.02562 * 11 9 8 13 13 C 1.38240 * 119.99986 * 269.72231 * 12 11 9 14 14 C 1.38229 * 119.99707 * 179.76697 * 13 12 11 15 15 C 1.38235 * 120.00308 * 0.51650 * 14 13 12 16 16 C 1.50699 * 120.00197 * 179.72349 * 15 14 13 17 17 O 1.42904 * 109.47188 * 245.01866 * 16 15 14 18 18 Si 1.86301 * 109.47071 * 5.01931 * 16 15 14 19 19 H 1.48496 * 109.47014 * 60.00339 * 18 16 15 20 20 H 1.48504 * 109.46952 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47072 * 299.99857 * 18 16 15 22 22 C 1.38242 * 120.00009 * 359.74022 * 15 14 13 23 23 C 1.38230 * 119.99446 * 0.02562 * 22 15 14 24 24 C 1.47721 * 111.30499 * 79.01856 * 7 6 5 25 25 H 1.08998 * 109.47241 * 298.62950 * 1 2 3 26 26 H 1.08994 * 109.47549 * 58.63733 * 1 2 3 27 27 H 1.09001 * 109.46977 * 178.64056 * 1 2 3 28 28 H 1.09003 * 109.47387 * 181.36200 * 3 2 1 29 29 H 1.09006 * 109.47586 * 301.36485 * 3 2 1 30 30 H 1.09003 * 109.47278 * 61.36169 * 3 2 1 31 31 H 1.08998 * 109.97543 * 194.83580 * 4 2 1 32 32 H 1.08996 * 109.98214 * 316.08342 * 4 2 1 33 33 H 1.08996 * 109.49941 * 177.15600 * 5 4 2 34 34 H 1.09006 * 109.49549 * 297.22076 * 5 4 2 35 35 H 1.09002 * 108.99798 * 44.09792 * 6 5 4 36 36 H 1.09000 * 109.00079 * 162.85847 * 6 5 4 37 37 H 0.96991 * 120.00168 * 304.56525 * 8 7 6 38 38 H 1.08995 * 109.47044 * 300.00075 * 11 9 8 39 39 H 1.08996 * 109.46718 * 60.00309 * 11 9 8 40 40 H 1.07995 * 120.00132 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.99928 * 180.23643 * 14 13 12 42 42 H 1.08998 * 109.47179 * 125.02108 * 16 15 14 43 43 H 0.96702 * 113.99827 * 59.99529 * 17 16 15 44 44 H 1.07993 * 119.99990 * 179.97438 * 22 15 14 45 45 H 1.08002 * 119.99691 * 179.97438 * 23 22 15 46 46 H 1.08998 * 109.95157 * 180.32059 * 24 7 6 47 47 H 1.08994 * 109.95212 * 59.06471 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9170 1.5046 5 6 2.3107 -2.4189 1.2280 6 6 3.0399 -2.7932 -0.0594 7 7 2.3060 -2.3582 -1.2486 8 7 2.6568 -3.1017 -2.3396 9 6 1.7091 -3.7464 -3.0486 10 8 0.5376 -3.5941 -2.7741 11 6 2.1052 -4.6565 -4.1826 12 6 0.8680 -5.2487 -4.8069 13 6 0.3617 -6.4459 -4.3363 14 6 -0.7758 -6.9867 -4.9057 15 6 -1.4011 -6.3358 -5.9528 16 6 -2.6377 -6.9285 -6.5776 17 8 -2.3607 -7.2893 -7.9324 18 14 -3.1499 -8.4445 -5.6236 19 1 -3.4378 -8.0696 -4.2159 20 1 -4.3682 -9.0289 -6.2397 21 1 -2.0519 -9.4436 -5.6551 22 6 -0.8918 -5.1412 -6.4269 23 6 0.2430 -4.5980 -5.8542 24 6 2.5043 -0.9169 -1.5043 25 1 -0.3633 0.4924 0.9020 26 1 -0.3634 0.5348 -0.8774 27 1 -0.3633 -1.0274 -0.0244 28 1 3.5917 1.7389 -0.0244 29 1 2.1242 2.2748 -0.8775 30 1 2.1640 2.2602 0.9020 31 1 3.5624 -0.6989 1.6506 32 1 1.9385 -0.6239 2.3888 33 1 2.7171 -2.9971 2.0577 34 1 1.2476 -2.6347 1.1204 35 1 4.0241 -2.3247 -0.0588 36 1 3.1639 -3.8756 -0.0952 37 1 3.5878 -3.1656 -2.6039 38 1 2.6524 -4.0854 -4.9326 39 1 2.7391 -5.4570 -3.8015 40 1 0.8526 -6.9566 -3.5211 41 1 -1.1736 -7.9201 -4.5356 42 1 -3.4437 -6.1951 -6.5545 43 1 -1.6521 -7.9401 -8.0290 44 1 -1.3800 -4.6329 -7.2451 45 1 0.6412 -3.6650 -6.2249 46 1 1.9446 -0.6158 -2.3898 47 1 3.5645 -0.7063 -1.6440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12335836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:34:47 Heat of formation + Delta-G solvation = -47.560393 kcal Electronic energy + Delta-G solvation = -25043.619516 eV Core-core repulsion = 21543.732079 eV Total energy + Delta-G solvation = -3499.887437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.163 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23175 -40.32870 -38.54811 -37.55378 -34.87577 -34.03412 -31.96478 -31.75980 -29.47669 -29.30083 -28.36787 -27.53032 -25.97091 -24.46187 -23.85270 -22.26042 -21.82887 -21.27909 -18.69586 -18.39205 -17.96110 -17.13693 -16.81870 -16.57885 -16.29865 -15.96221 -15.37799 -15.32167 -15.05733 -14.82471 -14.72733 -14.49792 -14.37848 -14.22583 -13.97377 -13.81416 -13.49846 -13.26808 -13.21115 -13.16170 -13.06832 -12.94265 -12.83633 -12.24218 -12.19837 -12.02220 -11.98337 -11.95483 -11.55126 -11.30629 -10.81187 -10.76039 -10.40995 -10.31416 -10.10542 -9.87951 -9.66567 -9.60107 0.22618 0.44544 1.16130 1.42129 1.50454 1.51929 1.70524 1.86278 1.88666 1.91411 2.18744 2.61856 2.75349 3.47747 3.51909 3.64563 3.77189 3.89743 3.99491 4.03670 4.04581 4.22350 4.34806 4.44403 4.44937 4.55123 4.57931 4.61721 4.69084 4.71736 4.75581 4.78672 4.80818 4.83351 4.84028 4.92810 5.02345 5.08094 5.10408 5.30479 5.36712 5.46908 5.53194 5.56912 5.58483 5.64290 5.85012 6.01268 6.33869 6.50466 6.69773 7.62415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.089 2.911 3 C -0.454 4.454 4 C -0.412 4.412 5 C -0.104 4.104 6 C 0.027 3.973 7 N -0.303 5.303 8 N -0.581 5.581 9 C 0.526 3.474 10 O -0.559 6.559 11 C -0.092 4.092 12 C -0.070 4.070 13 C -0.111 4.111 14 C -0.137 4.137 15 C -0.127 4.127 16 C -0.080 4.080 17 O -0.551 6.551 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.246 1.246 22 C -0.103 4.103 23 C -0.114 4.114 24 C -0.268 4.268 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.395 0.605 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.389 0.611 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.074 0.926 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.601 0.616 1.328 7.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.278 2.722 3 C -0.563 4.563 4 C -0.498 4.498 5 C -0.142 4.142 6 C -0.100 4.100 7 N -0.120 5.120 8 N -0.326 5.326 9 C 0.314 3.686 10 O -0.435 6.435 11 C -0.133 4.133 12 C -0.071 4.071 13 C -0.129 4.129 14 C -0.155 4.155 15 C -0.128 4.128 16 C -0.190 4.190 17 O -0.358 6.358 18 Si 0.809 3.191 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.170 1.170 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.440 4.440 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.235 0.765 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.238 0.762 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.093 0.907 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.559 0.268 1.902 5.881 hybrid contribution 1.453 0.199 -0.428 1.528 sum 7.012 0.467 1.475 7.180 Atomic orbital electron populations 1.26351 1.23228 1.03575 1.03886 0.78334 0.64864 0.65119 0.63905 1.26154 1.06877 1.18348 1.04889 1.26404 1.07022 1.01862 1.14524 1.21206 1.00870 0.96766 0.95403 1.22559 0.96432 1.01512 0.89539 1.62950 1.53815 1.00427 0.94783 1.45573 1.09882 1.49922 1.27270 1.21016 0.85173 0.79666 0.82753 1.90719 1.19951 1.63814 1.68995 1.20720 0.96705 0.99750 0.96126 1.19529 0.96921 0.94799 0.95855 1.21180 0.96207 0.95936 0.99540 1.21181 0.96769 1.00465 0.97038 1.20416 0.98180 0.96683 0.97482 1.25006 0.97394 1.08317 0.88301 1.86481 1.60017 1.65400 1.23949 0.85190 0.79760 0.76444 0.77705 1.19053 1.19905 1.16994 1.21120 0.96112 0.95117 0.99717 1.21269 0.95821 0.99786 0.96344 1.28199 1.05243 0.93149 1.17455 0.90993 0.92190 0.92594 0.90352 0.91275 0.90460 0.89345 0.89822 0.90106 0.92117 0.91974 0.90322 0.76503 0.85189 0.84969 0.84479 0.85448 0.86402 0.76213 0.85216 0.84834 0.90747 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -1.09 8.65 113.37 0.98 -0.11 16 2 Si 1.09 -4.37 11.99 68.60 0.82 -3.54 16 3 C -0.45 2.05 8.65 113.37 0.98 3.03 16 4 C -0.41 1.77 5.04 72.30 0.36 2.14 16 5 C -0.10 0.17 5.74 30.78 0.18 0.35 16 6 C 0.03 -0.05 5.38 86.28 0.46 0.41 16 7 N -0.30 -0.54 4.15 -334.15 -1.39 -1.93 16 8 N -0.58 0.24 4.71 -173.53 -0.82 -0.57 16 9 C 0.53 2.11 7.92 87.66 0.69 2.81 16 10 O -0.56 -8.39 16.36 -3.03 -0.05 -8.44 16 11 C -0.09 0.32 5.83 29.10 0.17 0.49 16 12 C -0.07 -0.19 4.37 -19.86 -0.09 -0.28 16 13 C -0.11 -0.38 9.70 22.27 0.22 -0.17 16 14 C -0.14 -0.57 8.67 22.27 0.19 -0.38 16 15 C -0.13 -0.57 5.35 -19.86 -0.11 -0.68 16 16 C -0.08 -0.18 2.80 71.24 0.20 0.02 16 17 O -0.55 -1.45 12.83 -148.98 -1.91 -3.36 16 18 Si 0.98 1.53 25.14 68.60 1.72 3.26 16 19 H -0.27 -1.07 7.11 99.48 0.71 -0.37 16 20 H -0.27 -1.22 7.11 99.48 0.71 -0.52 16 21 H -0.25 -0.09 7.04 99.48 0.70 0.61 16 22 C -0.10 -0.50 9.69 22.27 0.22 -0.29 16 23 C -0.11 -0.43 9.70 22.27 0.22 -0.22 16 24 C -0.27 0.30 4.86 127.53 0.62 0.92 16 25 H 0.07 0.05 7.96 -2.39 -0.02 0.04 16 26 H 0.06 0.20 7.96 -2.39 -0.02 0.18 16 27 H 0.05 0.38 7.96 -2.39 -0.02 0.36 16 28 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 29 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 30 H 0.08 -0.36 7.96 -2.39 -0.02 -0.37 16 31 H 0.09 -0.58 7.99 -2.39 -0.02 -0.60 16 32 H 0.08 -0.37 7.99 -2.39 -0.02 -0.39 16 33 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.06 0.12 7.96 -2.38 -0.02 0.10 16 35 H 0.06 -0.35 7.78 -2.39 -0.02 -0.37 16 36 H 0.08 -0.15 8.03 -2.39 -0.02 -0.17 16 37 H 0.39 -2.86 8.83 -215.51 -1.90 -4.76 16 38 H 0.13 -1.13 8.08 -2.39 -0.02 -1.15 16 39 H 0.13 -1.18 8.08 -2.39 -0.02 -1.20 16 40 H 0.14 -0.06 8.06 -2.91 -0.02 -0.08 16 41 H 0.13 0.19 4.87 -2.91 -0.01 0.18 16 42 H 0.12 0.19 7.96 -2.39 -0.02 0.17 16 43 H 0.39 -1.62 8.70 -74.06 -0.64 -2.26 16 44 H 0.13 0.44 8.06 -2.91 -0.02 0.41 16 45 H 0.13 0.06 8.06 -2.91 -0.02 0.03 16 46 H 0.07 0.15 7.99 -2.39 -0.02 0.13 16 47 H 0.07 -0.32 7.92 -2.39 -0.02 -0.34 16 Total: 0.00 -20.79 381.08 2.84 -17.95 By element: Atomic # 1 Polarization: -10.57 SS G_CDS: -0.84 Total: -11.41 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.30 Total: 8.04 kcal Atomic # 7 Polarization: -0.30 SS G_CDS: -2.20 Total: -2.50 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.96 Total: -11.80 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: 2.55 Total: -0.28 kcal Total: -20.79 2.84 -17.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12335836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.610 kcal (2) G-P(sol) polarization free energy of solvation -20.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds