Wall clock time and date at job start Sun Mar 7 2021 08:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86301 * 110.06077 * 2 1 4 4 C 1.87521 * 110.00494 * 238.63803 * 2 1 3 5 5 C 1.53933 * 106.84898 * 196.90070 * 4 2 1 6 6 C 1.52620 * 109.31091 * 57.20294 * 5 4 2 7 7 N 1.46361 * 111.89150 * 283.47500 * 6 5 4 8 8 N 1.36605 * 110.99783 * 203.19622 * 7 6 5 9 9 C 1.34773 * 119.99301 * 111.13050 * 8 7 6 10 10 O 1.21584 * 120.00573 * 354.96943 * 9 8 7 11 11 C 1.47585 * 119.99638 * 174.69171 * 9 8 7 12 12 C 1.40204 * 119.83136 * 0.02562 * 11 9 8 13 13 C 1.36232 * 120.37708 * 179.74085 * 12 11 9 14 14 C 1.39873 * 119.95974 * 0.54294 * 13 12 11 15 15 C 1.46257 * 133.84641 * 179.68677 * 14 13 12 16 16 C 1.50701 * 126.47977 * 359.97438 * 15 14 13 17 17 O 1.42910 * 109.47189 * 285.00367 * 16 15 14 18 18 Si 1.86298 * 109.47188 * 165.00107 * 16 15 14 19 19 H 1.48498 * 109.47146 * 60.00344 * 18 16 15 20 20 H 1.48504 * 109.47234 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47133 * 299.99747 * 18 16 15 22 22 C 1.34449 * 107.04245 * 180.02562 * 15 14 13 23 23 N 1.36566 * 109.97843 * 359.97438 * 22 15 14 24 24 C 1.37828 * 109.86629 * 359.97438 * 23 22 15 25 25 C 1.38635 * 133.38254 * 179.97438 * 24 23 22 26 26 C 1.47724 * 111.30090 * 79.02254 * 7 6 5 27 27 H 1.09004 * 109.47430 * 298.63663 * 1 2 3 28 28 H 1.08999 * 109.47504 * 58.63810 * 1 2 3 29 29 H 1.09002 * 109.47263 * 178.63525 * 1 2 3 30 30 H 1.09007 * 109.47342 * 181.36447 * 3 2 1 31 31 H 1.08999 * 109.47053 * 301.36030 * 3 2 1 32 32 H 1.09002 * 109.47182 * 61.36114 * 3 2 1 33 33 H 1.09000 * 109.97612 * 316.23251 * 4 2 1 34 34 H 1.08991 * 109.98172 * 77.47350 * 4 2 1 35 35 H 1.09002 * 109.49325 * 177.15053 * 5 4 2 36 36 H 1.08993 * 109.49626 * 297.21607 * 5 4 2 37 37 H 1.09004 * 108.99636 * 162.85462 * 6 5 4 38 38 H 1.09001 * 109.00183 * 44.09723 * 6 5 4 39 39 H 0.96994 * 119.99828 * 291.12564 * 8 7 6 40 40 H 1.08004 * 119.81061 * 359.97438 * 12 11 9 41 41 H 1.08001 * 120.01847 * 180.26329 * 13 12 11 42 42 H 1.08998 * 109.47217 * 44.99996 * 16 15 14 43 43 H 0.96699 * 113.99478 * 299.99601 * 17 16 15 44 44 H 1.07991 * 125.01294 * 179.97438 * 22 15 14 45 45 H 0.97005 * 125.06556 * 180.02562 * 23 22 15 46 46 H 1.08007 * 120.16814 * 0.03207 * 25 24 23 47 47 H 1.08999 * 109.94913 * 59.06596 * 26 7 6 48 48 H 1.09002 * 109.94211 * 180.31879 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5044 -0.9171 -1.5046 5 6 3.9816 -1.2500 -1.2279 6 6 4.0831 -2.0635 0.0594 7 7 3.9262 -1.2249 1.2486 8 7 4.5043 -1.8095 2.3396 9 6 5.6119 -1.2696 2.8856 10 8 6.1492 -0.3169 2.3545 11 6 6.1691 -1.8309 4.1316 12 6 5.5437 -2.9261 4.7439 13 6 6.0516 -3.4565 5.8915 14 6 7.1968 -2.9004 6.4708 15 6 7.9791 -3.2097 7.6673 16 6 7.7049 -4.3129 8.6566 17 8 6.5948 -3.9494 9.4799 18 14 9.2088 -4.5781 9.7237 19 1 9.5242 -3.3247 10.4549 20 1 8.9384 -5.6648 10.6991 21 1 10.3623 -4.9559 8.8683 22 6 8.9885 -2.3231 7.7182 23 7 8.9165 -1.4724 6.6523 24 6 7.8318 -1.7970 5.8664 25 6 7.3121 -1.2679 4.6951 26 6 2.5042 -0.9168 1.5043 27 1 -0.3634 0.4925 0.9020 28 1 -0.3634 0.5348 -0.8775 29 1 -0.3634 -1.0274 -0.0245 30 1 3.5917 1.7389 -0.0245 31 1 2.1242 2.2747 -0.8775 32 1 2.1639 2.2602 0.9019 33 1 1.9367 -1.8360 -1.6507 34 1 2.4231 -0.2849 -2.3888 35 1 4.3853 -1.8302 -2.0577 36 1 4.5489 -0.3256 -1.1204 37 1 5.0573 -2.5511 0.0951 38 1 3.3055 -2.8273 0.0588 39 1 4.1176 -2.6130 2.7212 40 1 4.6564 -3.3542 4.3014 41 1 5.5676 -4.3029 6.3560 42 1 7.4733 -5.2330 8.1200 43 1 6.7309 -3.1379 9.9879 44 1 9.7447 -2.2887 8.4883 45 1 9.5368 -0.7481 6.4744 46 1 7.7893 -0.4216 4.2232 47 1 1.9429 -1.8407 1.6440 48 1 2.4135 -0.2878 2.3898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:34:59 Heat of formation + Delta-G solvation = -12.062948 kcal Electronic energy + Delta-G solvation = -27918.720721 eV Core-core repulsion = 24098.494377 eV Total energy + Delta-G solvation = -3820.226344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.46029 -40.88970 -38.68255 -37.76334 -37.32209 -34.87160 -33.23024 -32.01975 -30.69039 -30.09615 -29.38827 -28.39716 -27.56058 -26.53306 -25.47871 -23.78272 -23.58194 -21.83915 -21.33641 -20.82081 -19.41394 -18.73068 -18.20582 -17.39196 -16.91023 -16.64729 -16.26683 -16.07641 -15.85799 -15.38840 -15.22471 -14.91819 -14.86667 -14.73707 -14.71420 -14.56716 -14.36030 -14.17716 -14.06210 -13.83130 -13.55833 -13.25985 -13.13593 -13.12345 -12.98513 -12.56968 -12.48389 -12.23195 -12.08142 -12.03705 -11.98955 -11.78057 -11.25009 -10.86170 -10.72692 -10.62941 -10.39044 -10.34149 -10.12566 -9.60930 -9.32802 -8.79395 -0.21672 0.42811 1.14394 1.34279 1.39267 1.41137 1.50322 1.75249 1.82760 1.89286 1.95833 2.13747 2.18696 2.55464 2.99989 3.41842 3.55385 3.59374 3.76966 3.77866 3.89415 4.00160 4.13460 4.16566 4.34290 4.38195 4.45214 4.52738 4.55246 4.58975 4.64702 4.67351 4.67718 4.74576 4.78407 4.82264 4.88921 4.94056 5.01865 5.07466 5.26355 5.27526 5.40242 5.43911 5.46227 5.50034 5.63357 5.69655 5.82185 6.00914 6.36889 6.39921 6.54084 6.62384 7.66257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.033 2.967 3 C -0.444 4.444 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.025 3.975 7 N -0.275 5.275 8 N -0.583 5.583 9 C 0.578 3.422 10 O -0.513 6.513 11 C -0.116 4.116 12 C -0.115 4.115 13 C -0.071 4.071 14 C -0.062 4.062 15 C -0.209 4.209 16 C -0.044 4.044 17 O -0.540 6.540 18 Si 0.946 3.054 19 H -0.253 1.253 20 H -0.250 1.250 21 H -0.250 1.250 22 C 0.067 3.933 23 N -0.583 5.583 24 C 0.083 3.917 25 C -0.056 4.056 26 C -0.260 4.260 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.379 0.621 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.374 0.626 44 H 0.173 0.827 45 H 0.422 0.578 46 H 0.137 0.863 47 H 0.054 0.946 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -1.665 1.366 2.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.226 2.774 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.103 4.103 7 N -0.091 5.091 8 N -0.328 5.328 9 C 0.366 3.634 10 O -0.387 6.387 11 C -0.122 4.122 12 C -0.135 4.135 13 C -0.089 4.089 14 C -0.067 4.067 15 C -0.217 4.217 16 C -0.155 4.155 17 O -0.345 6.345 18 Si 0.768 3.232 19 H -0.177 1.177 20 H -0.174 1.174 21 H -0.174 1.174 22 C -0.061 4.061 23 N -0.186 5.186 24 C -0.024 4.024 25 C -0.077 4.077 26 C -0.433 4.433 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.218 0.782 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.221 0.779 44 H 0.190 0.810 45 H 0.260 0.740 46 H 0.155 0.845 47 H 0.073 0.927 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.904 -1.144 1.202 1.890 hybrid contribution -0.480 -0.348 0.238 0.639 sum 0.424 -1.492 1.441 2.117 Atomic orbital electron populations 1.26120 1.20341 1.04570 1.04809 0.79186 0.65782 0.67641 0.64803 1.26033 1.07313 1.17743 1.04115 1.26382 1.00802 1.08065 1.14386 1.21178 0.96486 1.01171 0.95046 1.22597 1.02151 0.95192 0.90362 1.62968 1.13820 1.38226 0.94094 1.45489 1.29133 1.29404 1.28753 1.17952 0.79177 0.82920 0.83373 1.90772 1.58861 1.26862 1.62239 1.19401 0.97555 0.98816 0.96385 1.20692 1.00085 0.96267 0.96446 1.20202 0.94255 0.99657 0.94796 1.19135 0.96370 0.96047 0.95167 1.20715 0.98838 1.02566 0.99550 1.24267 0.99430 0.97430 0.94376 1.86522 1.40275 1.47273 1.60413 0.85795 0.76305 0.81542 0.79530 1.17696 1.17361 1.17370 1.21776 1.00152 0.92127 0.92076 1.41702 1.25265 1.30155 1.21431 1.18071 0.91039 0.98295 0.94977 1.20046 0.95173 0.99862 0.92642 1.28075 0.90633 1.07084 1.17506 0.91053 0.90716 0.91203 0.90338 0.91360 0.91367 0.90724 0.90125 0.90928 0.90217 0.90225 0.93814 0.78164 0.85832 0.85068 0.86775 0.77885 0.81023 0.74026 0.84520 0.92741 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.80 8.65 101.05 0.87 1.67 16 2 Si 1.03 -1.99 11.99 -169.99 -2.04 -4.03 16 3 C -0.44 -0.03 8.65 101.05 0.87 0.85 16 4 C -0.41 0.56 5.04 37.64 0.19 0.75 16 5 C -0.10 0.00 5.74 -26.44 -0.15 -0.15 16 6 C 0.02 0.01 5.38 -4.31 -0.02 -0.01 16 7 N -0.28 -0.47 4.15 -56.96 -0.24 -0.71 16 8 N -0.58 -0.97 4.65 30.47 0.14 -0.83 16 9 C 0.58 2.32 7.86 -12.45 -0.10 2.22 16 10 O -0.51 -3.95 16.64 5.29 0.09 -3.86 16 11 C -0.12 -0.28 5.87 -104.95 -0.62 -0.90 16 12 C -0.12 -0.07 9.46 -39.57 -0.37 -0.44 16 13 C -0.07 -0.07 10.03 -39.69 -0.40 -0.47 16 14 C -0.06 -0.11 6.35 -105.05 -0.67 -0.78 16 15 C -0.21 -0.05 5.57 -102.74 -0.57 -0.62 16 16 C -0.04 0.04 3.06 36.01 0.11 0.15 16 17 O -0.54 -0.06 12.88 -35.23 -0.45 -0.51 16 18 Si 0.95 -1.53 26.08 -169.99 -4.43 -5.96 16 19 H -0.25 0.52 7.03 56.52 0.40 0.91 16 20 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 21 H -0.25 0.21 7.11 56.52 0.40 0.61 16 22 C 0.07 -0.08 10.43 -16.78 -0.18 -0.26 16 23 N -0.58 0.49 6.07 -10.69 -0.06 0.43 16 24 C 0.08 0.13 7.26 -84.00 -0.61 -0.48 16 25 C -0.06 -0.13 9.61 -39.03 -0.38 -0.51 16 26 C -0.26 0.09 4.85 60.52 0.29 0.38 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.08 0.13 7.96 -51.92 -0.41 -0.29 16 31 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 32 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 33 H 0.07 -0.13 7.99 -51.93 -0.42 -0.55 16 34 H 0.08 -0.13 7.99 -51.93 -0.42 -0.54 16 35 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 36 H 0.08 0.08 7.96 -51.93 -0.41 -0.33 16 37 H 0.08 0.10 8.03 -51.93 -0.42 -0.32 16 38 H 0.04 -0.04 7.78 -51.93 -0.40 -0.44 16 39 H 0.38 -0.34 6.84 -185.16 -1.27 -1.60 16 40 H 0.12 -0.24 6.37 -52.48 -0.33 -0.58 16 41 H 0.13 -0.04 8.06 -52.49 -0.42 -0.46 16 42 H 0.11 -0.14 7.96 -51.93 -0.41 -0.55 16 43 H 0.37 -1.14 8.70 45.56 0.40 -0.74 16 44 H 0.17 -0.68 6.29 -52.49 -0.33 -1.01 16 45 H 0.42 -1.49 8.96 -40.82 -0.37 -1.86 16 46 H 0.14 0.30 7.62 -52.48 -0.40 -0.10 16 47 H 0.05 -0.08 7.92 -51.93 -0.41 -0.50 16 48 H 0.09 0.02 7.99 -51.93 -0.41 -0.40 16 LS Contribution 389.91 15.07 5.88 5.88 Total: 0.00 -8.93 389.91 -10.57 -19.51 By element: Atomic # 1 Polarization: -3.58 SS G_CDS: -7.73 Total: -11.31 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.72 Total: 1.40 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -0.16 Total: -1.11 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.37 Total: -4.37 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: -6.47 Total: -10.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -8.93 -10.57 -19.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.443 kcal (2) G-P(sol) polarization free energy of solvation -8.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds