Wall clock time and date at job start Sun Mar 7 2021 08:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86301 * 110.06077 * 2 1 4 4 C 1.87521 * 110.00494 * 238.63803 * 2 1 3 5 5 C 1.53933 * 106.84898 * 196.90070 * 4 2 1 6 6 C 1.52620 * 109.31091 * 57.20294 * 5 4 2 7 7 N 1.46361 * 111.89150 * 283.47500 * 6 5 4 8 8 N 1.36605 * 110.99783 * 203.19622 * 7 6 5 9 9 C 1.34773 * 119.99301 * 111.13050 * 8 7 6 10 10 O 1.21584 * 120.00573 * 354.96943 * 9 8 7 11 11 C 1.47585 * 119.99638 * 174.69171 * 9 8 7 12 12 C 1.40204 * 119.83136 * 0.02562 * 11 9 8 13 13 C 1.36232 * 120.37708 * 179.74085 * 12 11 9 14 14 C 1.39873 * 119.95974 * 0.54294 * 13 12 11 15 15 C 1.46257 * 133.84641 * 179.68677 * 14 13 12 16 16 C 1.50701 * 126.47977 * 359.97438 * 15 14 13 17 17 O 1.42910 * 109.47189 * 285.00367 * 16 15 14 18 18 Si 1.86298 * 109.47188 * 165.00107 * 16 15 14 19 19 H 1.48498 * 109.47146 * 60.00344 * 18 16 15 20 20 H 1.48504 * 109.47234 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47133 * 299.99747 * 18 16 15 22 22 C 1.34449 * 107.04245 * 180.02562 * 15 14 13 23 23 N 1.36566 * 109.97843 * 359.97438 * 22 15 14 24 24 C 1.37828 * 109.86629 * 359.97438 * 23 22 15 25 25 C 1.38635 * 133.38254 * 179.97438 * 24 23 22 26 26 C 1.47724 * 111.30090 * 79.02254 * 7 6 5 27 27 H 1.09004 * 109.47430 * 298.63663 * 1 2 3 28 28 H 1.08999 * 109.47504 * 58.63810 * 1 2 3 29 29 H 1.09002 * 109.47263 * 178.63525 * 1 2 3 30 30 H 1.09007 * 109.47342 * 181.36447 * 3 2 1 31 31 H 1.08999 * 109.47053 * 301.36030 * 3 2 1 32 32 H 1.09002 * 109.47182 * 61.36114 * 3 2 1 33 33 H 1.09000 * 109.97612 * 316.23251 * 4 2 1 34 34 H 1.08991 * 109.98172 * 77.47350 * 4 2 1 35 35 H 1.09002 * 109.49325 * 177.15053 * 5 4 2 36 36 H 1.08993 * 109.49626 * 297.21607 * 5 4 2 37 37 H 1.09004 * 108.99636 * 162.85462 * 6 5 4 38 38 H 1.09001 * 109.00183 * 44.09723 * 6 5 4 39 39 H 0.96994 * 119.99828 * 291.12564 * 8 7 6 40 40 H 1.08004 * 119.81061 * 359.97438 * 12 11 9 41 41 H 1.08001 * 120.01847 * 180.26329 * 13 12 11 42 42 H 1.08998 * 109.47217 * 44.99996 * 16 15 14 43 43 H 0.96699 * 113.99478 * 299.99601 * 17 16 15 44 44 H 1.07991 * 125.01294 * 179.97438 * 22 15 14 45 45 H 0.97005 * 125.06556 * 180.02562 * 23 22 15 46 46 H 1.08007 * 120.16814 * 0.03207 * 25 24 23 47 47 H 1.08999 * 109.94913 * 59.06596 * 26 7 6 48 48 H 1.09002 * 109.94211 * 180.31879 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5044 -0.9171 -1.5046 5 6 3.9816 -1.2500 -1.2279 6 6 4.0831 -2.0635 0.0594 7 7 3.9262 -1.2249 1.2486 8 7 4.5043 -1.8095 2.3396 9 6 5.6119 -1.2696 2.8856 10 8 6.1492 -0.3169 2.3545 11 6 6.1691 -1.8309 4.1316 12 6 5.5437 -2.9261 4.7439 13 6 6.0516 -3.4565 5.8915 14 6 7.1968 -2.9004 6.4708 15 6 7.9791 -3.2097 7.6673 16 6 7.7049 -4.3129 8.6566 17 8 6.5948 -3.9494 9.4799 18 14 9.2088 -4.5781 9.7237 19 1 9.5242 -3.3247 10.4549 20 1 8.9384 -5.6648 10.6991 21 1 10.3623 -4.9559 8.8683 22 6 8.9885 -2.3231 7.7182 23 7 8.9165 -1.4724 6.6523 24 6 7.8318 -1.7970 5.8664 25 6 7.3121 -1.2679 4.6951 26 6 2.5042 -0.9168 1.5043 27 1 -0.3634 0.4925 0.9020 28 1 -0.3634 0.5348 -0.8775 29 1 -0.3634 -1.0274 -0.0245 30 1 3.5917 1.7389 -0.0245 31 1 2.1242 2.2747 -0.8775 32 1 2.1639 2.2602 0.9019 33 1 1.9367 -1.8360 -1.6507 34 1 2.4231 -0.2849 -2.3888 35 1 4.3853 -1.8302 -2.0577 36 1 4.5489 -0.3256 -1.1204 37 1 5.0573 -2.5511 0.0951 38 1 3.3055 -2.8273 0.0588 39 1 4.1176 -2.6130 2.7212 40 1 4.6564 -3.3542 4.3014 41 1 5.5676 -4.3029 6.3560 42 1 7.4733 -5.2330 8.1200 43 1 6.7309 -3.1379 9.9879 44 1 9.7447 -2.2887 8.4883 45 1 9.5368 -0.7481 6.4744 46 1 7.7893 -0.4216 4.2232 47 1 1.9429 -1.8407 1.6440 48 1 2.4135 -0.2878 2.3898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:34:58 Heat of formation + Delta-G solvation = -8.789536 kcal Electronic energy + Delta-G solvation = -27918.578775 eV Core-core repulsion = 24098.494377 eV Total energy + Delta-G solvation = -3820.084398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.47292 -41.07702 -38.78172 -37.77949 -37.40111 -34.95595 -33.25269 -32.10613 -30.72446 -30.13839 -29.30495 -28.33755 -27.52268 -26.48380 -25.51899 -23.82225 -23.64824 -21.84854 -21.51986 -20.80036 -19.45716 -18.79346 -18.24646 -17.40154 -16.95307 -16.74612 -16.33300 -16.08210 -15.81066 -15.49729 -15.23387 -14.99464 -14.84635 -14.81829 -14.75188 -14.52179 -14.34406 -14.22199 -13.96194 -13.79106 -13.48765 -13.17576 -13.11233 -13.10318 -12.96568 -12.64815 -12.40489 -12.24682 -12.03004 -12.02322 -11.95892 -11.69396 -11.38115 -10.80901 -10.78670 -10.77687 -10.40658 -10.26172 -10.20972 -9.65206 -9.38159 -8.80459 -0.32830 0.36711 1.27099 1.36927 1.41553 1.52441 1.61875 1.82231 1.92152 1.95122 2.00740 2.05471 2.23588 2.63021 2.87402 3.36769 3.59949 3.64602 3.75496 3.86374 3.90887 4.01867 4.11347 4.16996 4.29673 4.42892 4.47549 4.52773 4.54935 4.60956 4.68772 4.75313 4.81298 4.81897 4.82968 4.86629 4.87302 4.93514 4.98377 5.10377 5.20153 5.30766 5.40378 5.48401 5.48834 5.60181 5.61188 5.67416 5.82370 5.96837 6.21388 6.39916 6.50294 6.84358 7.48964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.096 2.904 3 C -0.465 4.465 4 C -0.414 4.414 5 C -0.103 4.103 6 C 0.025 3.975 7 N -0.300 5.300 8 N -0.573 5.573 9 C 0.576 3.424 10 O -0.562 6.562 11 C -0.130 4.130 12 C -0.109 4.109 13 C -0.079 4.079 14 C -0.078 4.078 15 C -0.226 4.226 16 C -0.046 4.046 17 O -0.558 6.558 18 Si 0.988 3.012 19 H -0.240 1.240 20 H -0.278 1.278 21 H -0.260 1.260 22 C 0.079 3.921 23 N -0.578 5.578 24 C 0.068 3.932 25 C -0.066 4.066 26 C -0.273 4.273 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.393 0.607 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.113 0.887 43 H 0.387 0.613 44 H 0.203 0.797 45 H 0.433 0.567 46 H 0.128 0.872 47 H 0.072 0.928 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 -2.631 1.938 3.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.285 2.715 3 C -0.571 4.571 4 C -0.500 4.500 5 C -0.141 4.141 6 C -0.102 4.102 7 N -0.117 5.117 8 N -0.317 5.317 9 C 0.365 3.635 10 O -0.440 6.440 11 C -0.136 4.136 12 C -0.129 4.129 13 C -0.097 4.097 14 C -0.083 4.083 15 C -0.234 4.234 16 C -0.157 4.157 17 O -0.364 6.364 18 Si 0.811 3.189 19 H -0.163 1.163 20 H -0.203 1.203 21 H -0.184 1.184 22 C -0.050 4.050 23 N -0.181 5.181 24 C -0.039 4.039 25 C -0.087 4.087 26 C -0.444 4.444 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.131 0.869 43 H 0.235 0.765 44 H 0.220 0.780 45 H 0.274 0.726 46 H 0.146 0.854 47 H 0.091 0.909 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.155 -2.091 1.782 2.752 hybrid contribution -0.226 -0.043 0.097 0.250 sum -0.071 -2.134 1.879 2.844 Atomic orbital electron populations 1.26135 1.19836 1.05187 1.04997 0.78245 0.65221 0.64770 0.63290 1.26341 1.06020 1.20629 1.04122 1.26451 0.99743 1.08899 1.14916 1.21192 0.97486 1.00399 0.95061 1.22602 1.02141 0.95475 0.90025 1.62970 1.15136 1.39179 0.94387 1.45386 1.28346 1.29444 1.28528 1.18264 0.79316 0.82334 0.83595 1.90737 1.60456 1.29102 1.63729 1.19393 0.98145 0.99860 0.96205 1.20881 1.00494 0.95369 0.96155 1.20418 0.94312 1.00058 0.94934 1.19521 0.96778 0.96141 0.95900 1.20894 0.99318 1.03594 0.99544 1.24398 0.99827 0.97044 0.94389 1.86484 1.41013 1.48205 1.60744 0.85200 0.74832 0.80882 0.78002 1.16277 1.20289 1.18369 1.22266 0.99967 0.90889 0.91899 1.41786 1.24773 1.30459 1.21083 1.18110 0.92033 0.98662 0.95073 1.20081 0.95534 0.99907 0.93217 1.28321 0.89637 1.08133 1.18274 0.91042 0.90408 0.90359 0.92496 0.90858 0.91847 0.89399 0.89680 0.90407 0.91989 0.91473 0.91895 0.76578 0.83447 0.83845 0.86923 0.76467 0.78042 0.72640 0.85387 0.90938 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.21 8.65 113.37 0.98 3.20 16 2 Si 1.10 -4.42 11.99 68.60 0.82 -3.60 16 3 C -0.47 -0.75 8.65 113.37 0.98 0.23 16 4 C -0.41 1.39 5.04 72.30 0.36 1.76 16 5 C -0.10 -0.06 5.74 30.78 0.18 0.12 16 6 C 0.03 0.03 5.38 86.28 0.46 0.50 16 7 N -0.30 -1.32 4.15 -334.14 -1.39 -2.70 16 8 N -0.57 -2.51 4.65 -175.78 -0.82 -3.33 16 9 C 0.58 5.86 7.86 86.71 0.68 6.54 16 10 O -0.56 -10.45 16.64 -3.98 -0.07 -10.52 16 11 C -0.13 -0.85 5.87 -20.07 -0.12 -0.97 16 12 C -0.11 -0.19 9.46 22.28 0.21 0.03 16 13 C -0.08 -0.19 10.03 22.20 0.22 0.03 16 14 C -0.08 -0.31 6.35 -20.14 -0.13 -0.44 16 15 C -0.23 -0.02 5.57 -18.65 -0.10 -0.12 16 16 C -0.05 0.09 3.06 71.24 0.22 0.31 16 17 O -0.56 0.05 12.88 -148.98 -1.92 -1.87 16 18 Si 0.99 -4.08 26.08 68.60 1.79 -2.29 16 19 H -0.24 1.54 7.03 99.48 0.70 2.24 16 20 H -0.28 -0.11 7.11 99.48 0.71 0.59 16 21 H -0.26 0.69 7.11 99.48 0.71 1.39 16 22 C 0.08 -0.27 10.43 83.09 0.87 0.60 16 23 N -0.58 1.02 6.07 -187.73 -1.14 -0.12 16 24 C 0.07 0.28 7.26 38.95 0.28 0.56 16 25 C -0.07 -0.45 9.61 22.62 0.22 -0.23 16 26 C -0.27 0.18 4.85 127.53 0.62 0.80 16 27 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 28 H 0.08 -0.39 7.96 -2.39 -0.02 -0.40 16 29 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 30 H 0.06 0.34 7.96 -2.38 -0.02 0.32 16 31 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 32 H 0.06 0.13 7.96 -2.39 -0.02 0.12 16 33 H 0.09 -0.48 7.99 -2.39 -0.02 -0.50 16 34 H 0.08 -0.33 7.99 -2.39 -0.02 -0.35 16 35 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.06 0.25 7.96 -2.39 -0.02 0.23 16 37 H 0.07 0.24 8.03 -2.39 -0.02 0.23 16 38 H 0.06 -0.17 7.78 -2.39 -0.02 -0.19 16 39 H 0.39 -0.66 6.84 -215.50 -1.47 -2.13 16 40 H 0.15 -0.64 6.37 -2.91 -0.02 -0.66 16 41 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 42 H 0.11 -0.26 7.96 -2.39 -0.02 -0.28 16 43 H 0.39 -2.56 8.70 -74.06 -0.64 -3.21 16 44 H 0.20 -2.06 6.29 -2.92 -0.02 -2.08 16 45 H 0.43 -3.10 8.96 -92.70 -0.83 -3.93 16 46 H 0.13 0.97 7.62 -2.91 -0.02 0.94 16 47 H 0.07 -0.32 7.92 -2.39 -0.02 -0.34 16 48 H 0.08 0.09 7.99 -2.39 -0.02 0.07 16 Total: 0.00 -22.52 389.91 2.02 -20.51 By element: Atomic # 1 Polarization: -7.78 SS G_CDS: -1.20 Total: -8.98 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.94 Total: 12.91 kcal Atomic # 7 Polarization: -2.81 SS G_CDS: -3.34 Total: -6.15 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -1.99 Total: -12.38 kcal Atomic # 14 Polarization: -8.51 SS G_CDS: 2.61 Total: -5.90 kcal Total: -22.52 2.02 -20.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.716 kcal (2) G-P(sol) polarization free energy of solvation -22.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds