Wall clock time and date at job start Sun Mar 7 2021 08:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 110.06253 * 2 1 4 4 C 1.87519 * 110.00460 * 238.63602 * 2 1 3 5 5 C 1.53932 * 106.85037 * 196.90512 * 4 2 1 6 6 C 1.52615 * 109.31339 * 57.20278 * 5 4 2 7 7 N 1.46357 * 111.89052 * 283.47597 * 6 5 4 8 8 N 1.36604 * 111.00312 * 203.19380 * 7 6 5 9 9 C 1.34777 * 119.99536 * 111.11944 * 8 7 6 10 10 O 1.21553 * 120.00347 * 354.98362 * 9 8 7 11 11 C 1.47847 * 119.99899 * 174.97688 * 9 8 7 12 12 C 1.39556 * 120.14266 * 180.24934 * 11 9 8 13 13 C 1.37982 * 119.87742 * 180.27328 * 12 11 9 14 14 C 1.50693 * 119.92866 * 179.73332 * 13 12 11 15 15 O 1.42899 * 109.47467 * 64.72477 * 14 13 12 16 16 Si 1.86302 * 109.47580 * 184.72881 * 14 13 12 17 17 H 1.48499 * 109.46690 * 299.99672 * 16 14 13 18 18 H 1.48501 * 109.46738 * 59.99639 * 16 14 13 19 19 H 1.48500 * 109.47198 * 179.97438 * 16 14 13 20 20 C 1.38322 * 120.15291 * 359.45632 * 13 12 11 21 21 C 1.38472 * 120.28473 * 0.30012 * 20 13 12 22 22 Br 1.89091 * 119.93978 * 179.97438 * 21 20 13 23 23 C 1.38033 * 120.12041 * 359.97099 * 21 20 13 24 24 C 1.47724 * 111.30390 * 79.02413 * 7 6 5 25 25 H 1.09001 * 109.47036 * 298.64035 * 1 2 3 26 26 H 1.08999 * 109.47120 * 58.63741 * 1 2 3 27 27 H 1.08997 * 109.46686 * 178.63705 * 1 2 3 28 28 H 1.09006 * 109.47434 * 181.36078 * 3 2 1 29 29 H 1.09001 * 109.46991 * 301.36029 * 3 2 1 30 30 H 1.09000 * 109.47294 * 61.36050 * 3 2 1 31 31 H 1.09005 * 109.97354 * 316.23277 * 4 2 1 32 32 H 1.08996 * 109.98168 * 77.47572 * 4 2 1 33 33 H 1.09003 * 109.49788 * 177.15625 * 5 4 2 34 34 H 1.09005 * 109.49672 * 297.21440 * 5 4 2 35 35 H 1.09001 * 108.99799 * 162.85866 * 6 5 4 36 36 H 1.08995 * 109.00109 * 44.09615 * 6 5 4 37 37 H 0.97000 * 120.00344 * 291.12596 * 8 7 6 38 38 H 1.08005 * 120.06273 * 0.02562 * 12 11 9 39 39 H 1.09004 * 109.46923 * 304.73014 * 14 13 12 40 40 H 0.96701 * 114.00048 * 59.99909 * 15 14 13 41 41 H 1.07998 * 119.86109 * 180.27235 * 20 13 12 42 42 H 1.08001 * 120.07872 * 179.97438 * 23 21 20 43 43 H 1.08999 * 109.95341 * 59.06116 * 24 7 6 44 44 H 1.09004 * 109.95008 * 180.32145 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5045 -0.9171 -1.5046 5 6 3.9817 -1.2502 -1.2279 6 6 4.0831 -2.0636 0.0594 7 7 3.9263 -1.2250 1.2486 8 7 4.5043 -1.8095 2.3396 9 6 5.6121 -1.2698 2.8855 10 8 6.1492 -0.3174 2.3546 11 6 6.1738 -1.8360 4.1304 12 6 7.3177 -1.2762 4.7011 13 6 7.8406 -1.8125 5.8600 14 6 9.0792 -1.2127 6.4739 15 8 8.7990 0.1200 6.9066 16 14 9.6092 -2.2412 7.9341 17 1 8.5196 -2.2671 8.9427 18 1 9.9004 -3.6262 7.4843 19 1 10.8301 -1.6504 8.5387 20 6 7.2272 -2.8959 6.4626 21 6 6.0890 -3.4534 5.9048 22 35 5.2587 -4.9348 6.7364 23 6 5.5593 -2.9295 4.7427 24 6 2.5043 -0.9169 1.5043 25 1 -0.3633 0.4926 0.9019 26 1 -0.3633 0.5348 -0.8775 27 1 -0.3632 -1.0274 -0.0244 28 1 3.5918 1.7388 -0.0244 29 1 2.1244 2.2747 -0.8776 30 1 2.1641 2.2602 0.9019 31 1 1.9367 -1.8360 -1.6506 32 1 2.4232 -0.2850 -2.3888 33 1 4.3854 -1.8303 -2.0577 34 1 4.5491 -0.3257 -1.1204 35 1 5.0573 -2.5512 0.0952 36 1 3.3055 -2.8273 0.0588 37 1 4.1176 -2.6130 2.7213 38 1 7.7952 -0.4272 4.2344 39 1 9.8790 -1.1937 5.7335 40 1 8.0956 0.1793 7.5675 41 1 7.6379 -3.3092 7.3719 42 1 4.6717 -3.3651 4.3080 43 1 1.9429 -1.8407 1.6440 44 1 2.4135 -0.2878 2.3899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12335870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:33 Heat of formation + Delta-G solvation = -34.943986 kcal Electronic energy + Delta-G solvation = -25332.706660 eV Core-core repulsion = 21649.085928 eV Total energy + Delta-G solvation = -3683.620732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 386.057 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.66290 -40.32129 -38.52562 -37.66346 -35.06978 -33.65685 -33.38674 -31.31258 -30.50707 -29.31622 -28.33950 -27.55413 -27.03398 -25.98079 -24.03602 -22.84648 -21.87406 -21.57015 -19.37054 -18.56702 -17.85459 -17.57247 -16.97346 -16.78695 -16.32383 -15.84869 -15.56513 -15.46097 -15.11922 -14.94728 -14.73788 -14.72508 -14.39104 -14.09771 -13.97067 -13.79136 -13.50028 -13.34122 -13.17966 -13.10614 -13.03812 -12.96667 -12.26857 -12.17460 -12.04013 -11.99645 -11.97458 -11.77238 -11.56396 -11.37769 -10.87109 -10.80159 -10.56802 -10.43843 -10.30821 -10.19981 -9.95799 -9.68103 -0.55216 -0.19663 0.36815 1.08437 1.35522 1.41619 1.47897 1.55401 1.81884 1.89175 1.91585 2.13940 2.45999 2.62106 3.19490 3.27041 3.42023 3.55659 3.76538 3.82743 3.92765 4.00736 4.14366 4.18595 4.27695 4.42021 4.52965 4.57971 4.67885 4.70560 4.74098 4.81773 4.82192 4.86274 4.86711 4.90027 4.92434 5.03775 5.10189 5.30711 5.34709 5.48189 5.59674 5.67575 5.78719 6.13364 6.27652 6.65375 7.38636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.096 2.904 3 C -0.466 4.466 4 C -0.415 4.415 5 C -0.103 4.103 6 C 0.025 3.975 7 N -0.299 5.299 8 N -0.572 5.572 9 C 0.575 3.425 10 O -0.549 6.549 11 C -0.130 4.130 12 C -0.022 4.022 13 C -0.114 4.114 14 C -0.080 4.080 15 O -0.549 6.549 16 Si 0.970 3.030 17 H -0.243 1.243 18 H -0.250 1.250 19 H -0.269 1.269 20 C -0.073 4.073 21 C -0.099 4.099 22 Br -0.032 7.032 23 C -0.046 4.046 24 C -0.272 4.272 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.391 0.609 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.391 0.609 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.073 0.927 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 -3.989 0.553 5.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.285 2.715 3 C -0.571 4.571 4 C -0.501 4.501 5 C -0.142 4.142 6 C -0.103 4.103 7 N -0.116 5.116 8 N -0.317 5.317 9 C 0.362 3.638 10 O -0.426 6.426 11 C -0.135 4.135 12 C -0.042 4.042 13 C -0.115 4.115 14 C -0.190 4.190 15 O -0.356 6.356 16 Si 0.792 3.208 17 H -0.166 1.166 18 H -0.174 1.174 19 H -0.194 1.194 20 C -0.093 4.093 21 C -0.178 4.178 22 Br 0.054 6.946 23 C -0.066 4.066 24 C -0.443 4.443 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.233 0.767 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.240 0.760 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.092 0.908 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.024 -3.823 0.752 4.932 hybrid contribution -0.773 -0.561 0.139 0.965 sum -3.797 -4.384 0.891 5.868 Atomic orbital electron populations 1.26149 1.19962 1.05158 1.04989 0.78242 0.65158 0.64802 0.63326 1.26344 1.06073 1.20590 1.04125 1.26461 0.99808 1.08885 1.14939 1.21192 0.97438 1.00453 0.95070 1.22607 1.02268 0.95463 0.89930 1.63000 1.15225 1.39076 0.94265 1.45408 1.28294 1.29346 1.28619 1.18192 0.79518 0.82594 0.83469 1.90779 1.60117 1.28617 1.63080 1.19833 0.98587 0.98696 0.96370 1.21280 0.92549 0.97329 0.93018 1.20365 0.98777 0.96343 0.96006 1.25107 0.96532 0.89802 1.07591 1.86537 1.60590 1.25000 1.63499 0.85392 0.80545 0.78099 0.76715 1.16627 1.17353 1.19355 1.21423 0.93557 0.94770 0.99524 1.21707 0.99157 0.98233 0.98727 1.96845 1.79678 1.38228 1.79848 1.21418 0.98927 0.93407 0.92851 1.28308 0.89539 1.08190 1.18313 0.91028 0.90476 0.90388 0.92410 0.90941 0.91811 0.89438 0.89737 0.90403 0.91898 0.91271 0.91847 0.76703 0.84370 0.85186 0.76004 0.83610 0.82488 0.90827 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.61 8.65 113.37 0.98 3.59 16 2 Si 1.10 -5.70 11.99 68.60 0.82 -4.88 16 3 C -0.47 -0.27 8.65 113.37 0.98 0.72 16 4 C -0.42 1.83 5.04 72.30 0.36 2.19 16 5 C -0.10 0.08 5.74 30.78 0.18 0.26 16 6 C 0.02 -0.01 5.38 86.28 0.46 0.45 16 7 N -0.30 -0.68 4.15 -334.16 -1.39 -2.06 16 8 N -0.57 -0.94 4.65 -175.60 -0.82 -1.76 16 9 C 0.57 3.96 7.88 86.79 0.68 4.65 16 10 O -0.55 -8.64 16.68 -3.88 -0.06 -8.70 16 11 C -0.13 -0.32 5.87 -20.09 -0.12 -0.44 16 12 C -0.02 -0.07 9.22 22.53 0.21 0.14 16 13 C -0.11 0.05 5.35 -19.91 -0.11 -0.05 16 14 C -0.08 0.17 2.80 71.23 0.20 0.37 16 15 O -0.55 0.09 12.83 -148.98 -1.91 -1.82 16 16 Si 0.97 -2.81 25.13 68.60 1.72 -1.08 16 17 H -0.24 0.89 7.04 99.48 0.70 1.59 16 18 H -0.25 0.55 7.11 99.48 0.71 1.26 16 19 H -0.27 -0.23 7.11 99.48 0.71 0.48 16 20 C -0.07 0.09 8.41 22.35 0.19 0.28 16 21 C -0.10 0.10 6.22 22.28 0.14 0.24 16 22 Br -0.03 0.04 33.69 -20.37 -0.69 -0.64 16 23 C -0.05 0.08 9.27 22.55 0.21 0.29 16 24 C -0.27 0.68 4.85 127.53 0.62 1.30 16 25 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 26 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 27 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 28 H 0.06 0.28 7.96 -2.38 -0.02 0.26 16 29 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 30 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 31 H 0.09 -0.57 7.99 -2.38 -0.02 -0.58 16 32 H 0.08 -0.39 7.99 -2.39 -0.02 -0.41 16 33 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.06 0.17 7.96 -2.38 -0.02 0.15 16 35 H 0.07 0.11 8.03 -2.39 -0.02 0.09 16 36 H 0.06 -0.28 7.78 -2.39 -0.02 -0.30 16 37 H 0.39 -1.75 6.88 -215.49 -1.48 -3.23 16 38 H 0.14 0.75 7.65 -2.91 -0.02 0.73 16 39 H 0.13 -0.46 7.96 -2.38 -0.02 -0.48 16 40 H 0.39 -2.71 8.70 -74.06 -0.64 -3.35 16 41 H 0.15 -0.52 4.84 -2.91 -0.01 -0.54 16 42 H 0.16 -1.07 6.42 -2.91 -0.02 -1.08 16 43 H 0.07 -0.46 7.92 -2.39 -0.02 -0.48 16 44 H 0.09 -0.09 7.99 -2.38 -0.02 -0.11 16 Total: 0.00 -16.86 377.74 2.32 -14.55 By element: Atomic # 1 Polarization: -7.24 SS G_CDS: -0.35 Total: -7.59 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 4.99 Total: 13.99 kcal Atomic # 7 Polarization: -1.62 SS G_CDS: -2.20 Total: -3.82 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -1.98 Total: -10.52 kcal Atomic # 14 Polarization: -8.51 SS G_CDS: 2.55 Total: -5.96 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -0.69 Total: -0.64 kcal Total: -16.86 2.32 -14.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12335870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.395 kcal (2) G-P(sol) polarization free energy of solvation -16.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds