Wall clock time and date at job start Sun Mar 7 2021 08:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86302 * 110.05882 * 2 1 4 4 C 1.87772 * 110.10326 * 238.56976 * 2 1 3 5 5 C 1.53930 * 106.88145 * 196.93423 * 4 2 1 6 6 C 1.52620 * 109.31054 * 57.20377 * 5 4 2 7 7 N 1.46354 * 111.89365 * 283.47909 * 6 5 4 8 8 N 1.36597 * 111.00439 * 203.19512 * 7 6 5 9 9 C 1.34777 * 120.00136 * 115.64904 * 8 7 6 10 10 O 1.21697 * 119.99910 * 0.02562 * 9 8 7 11 11 C 1.46425 * 120.00102 * 180.02562 * 9 8 7 12 12 C 1.34814 * 119.99908 * 180.02562 * 11 9 8 13 13 C 1.47210 * 119.99704 * 179.97438 * 12 11 9 14 14 C 1.39831 * 120.17126 * 359.72525 * 13 12 11 15 15 C 1.37896 * 119.82450 * 179.78685 * 14 13 12 16 16 C 1.38397 * 120.17383 * 0.46907 * 15 14 13 17 17 C 1.50692 * 119.83219 * 179.76369 * 16 15 14 18 18 O 1.42901 * 109.47145 * 245.02044 * 17 16 15 19 19 Si 1.86306 * 109.46982 * 5.01744 * 17 16 15 20 20 H 1.48507 * 109.46680 * 60.00414 * 19 17 16 21 21 H 1.48496 * 109.47307 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47334 * 300.00256 * 19 17 16 23 23 C 1.38409 * 120.34158 * 359.78241 * 16 15 14 24 24 C 1.37889 * 120.16890 * 359.97438 * 23 16 15 25 25 C 1.47726 * 111.30712 * 79.01876 * 7 6 5 26 26 H 1.08997 * 109.46901 * 298.63756 * 1 2 3 27 27 H 1.09005 * 109.46732 * 58.63878 * 1 2 3 28 28 H 1.08995 * 109.46671 * 178.63368 * 1 2 3 29 29 H 1.09000 * 109.47456 * 181.36346 * 3 2 1 30 30 H 1.09002 * 109.47079 * 301.36550 * 3 2 1 31 31 H 1.08997 * 109.47362 * 61.36560 * 3 2 1 32 32 H 1.09006 * 109.96179 * 77.59600 * 4 2 1 33 33 H 1.08997 * 109.96261 * 316.28202 * 4 2 1 34 34 H 1.09001 * 109.49861 * 297.25449 * 5 4 2 35 35 H 1.09001 * 109.50212 * 177.15933 * 5 4 2 36 36 H 1.09003 * 109.00076 * 162.86056 * 6 5 4 37 37 H 1.08996 * 109.00031 * 44.09897 * 6 5 4 38 38 H 0.97004 * 120.00144 * 295.65439 * 8 7 6 39 39 H 1.07996 * 120.00264 * 359.97438 * 11 9 8 40 40 H 1.07994 * 120.00068 * 0.02562 * 12 11 9 41 41 H 1.08003 * 120.08688 * 0.02562 * 14 13 12 42 42 H 1.08004 * 119.91141 * 180.22901 * 15 14 13 43 43 H 1.09002 * 109.47541 * 125.02040 * 17 16 15 44 44 H 0.96705 * 113.99939 * 60.00118 * 18 17 16 45 45 H 1.07994 * 119.91120 * 179.97438 * 23 16 15 46 46 H 1.08010 * 120.08415 * 179.97438 * 24 23 16 47 47 H 1.09002 * 109.94693 * 59.06572 * 25 7 6 48 48 H 1.08998 * 109.94856 * 180.23237 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5085 -0.9195 -1.5046 5 6 3.9854 -1.2519 -1.2258 6 6 4.0853 -2.0643 0.0623 7 7 3.9267 -1.2249 1.2507 8 7 4.5034 -1.8083 2.3428 9 6 5.5552 -1.2188 2.9452 10 8 5.9907 -0.1665 2.5164 11 6 6.1737 -1.8446 4.1156 12 6 7.2254 -1.2546 4.7185 13 6 7.8469 -1.8834 5.8955 14 6 7.3458 -3.0896 6.3947 15 6 7.9362 -3.6747 7.4950 16 6 9.0160 -3.0662 8.1108 17 6 9.6519 -3.7096 9.3160 18 8 9.4645 -2.8713 10.4580 19 14 8.8597 -5.3672 9.6256 20 1 9.0546 -6.2383 8.4388 21 1 9.4868 -6.0015 10.8128 22 1 7.4068 -5.1833 9.8715 23 6 9.5145 -1.8696 7.6258 24 6 8.9380 -1.2747 6.5235 25 6 2.5043 -0.9168 1.5043 26 1 -0.3633 0.4925 0.9019 27 1 -0.3633 0.5349 -0.8776 28 1 -0.3632 -1.0274 -0.0245 29 1 3.5917 1.7390 -0.0245 30 1 2.1242 2.2748 -0.8775 31 1 2.1641 2.2602 0.9019 32 1 2.4297 -0.2873 -2.3891 33 1 1.9410 -1.8386 -1.6507 34 1 4.5523 -0.3272 -1.1176 35 1 4.3904 -1.8326 -2.0546 36 1 5.0596 -2.5517 0.0998 37 1 3.3079 -2.8283 0.0613 38 1 4.1561 -2.6470 2.6849 39 1 5.7870 -2.7782 4.4965 40 1 7.6114 -0.3203 4.3384 41 1 6.5009 -3.5638 5.9174 42 1 7.5526 -4.6082 7.8794 43 1 10.7184 -3.8446 9.1355 44 1 8.5371 -2.7078 10.6780 45 1 10.3571 -1.4006 8.1121 46 1 9.3279 -0.3407 6.1464 47 1 1.9430 -1.8407 1.6440 48 1 2.4122 -0.2884 2.3901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_12360594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:03 Heat of formation + Delta-G solvation = -32.514925 kcal Electronic energy + Delta-G solvation = -25549.440357 eV Core-core repulsion = 21921.979200 eV Total energy + Delta-G solvation = -3627.461157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.163 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97520 -40.56529 -38.53203 -37.77314 -35.03822 -34.85845 -32.35343 -31.90491 -30.89627 -29.41714 -28.41514 -27.63242 -27.21049 -25.18290 -24.15066 -23.44861 -22.06893 -21.75334 -20.47970 -18.91935 -18.42254 -18.06307 -17.12034 -16.74716 -16.62099 -16.31167 -15.97086 -15.39474 -15.25084 -15.17459 -14.95319 -14.79086 -14.66230 -14.43268 -14.36925 -14.09485 -13.86227 -13.84389 -13.58518 -13.34506 -13.27813 -13.15682 -13.03422 -12.99702 -12.33125 -12.23928 -12.09291 -12.08020 -12.02963 -11.62792 -11.34169 -11.27263 -10.88113 -10.66951 -10.48439 -10.40229 -10.10227 -10.05349 -9.69390 -9.29233 -0.56115 0.31417 0.92118 1.07853 1.35934 1.40163 1.44817 1.74151 1.80605 1.84691 2.10416 2.38837 2.53220 2.78495 3.34812 3.40209 3.54381 3.60797 3.75724 3.81204 3.95576 4.08598 4.11626 4.20167 4.25199 4.35371 4.39244 4.49676 4.51148 4.60689 4.64501 4.65160 4.70867 4.77162 4.79826 4.87177 4.89882 4.92583 5.02029 5.03852 5.09775 5.23779 5.32484 5.36772 5.41225 5.41737 5.56189 5.68410 5.78900 5.82542 6.36989 6.46964 6.51016 7.64249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.031 2.969 3 C -0.443 4.443 4 C -0.409 4.409 5 C -0.101 4.101 6 C 0.026 3.974 7 N -0.276 5.276 8 N -0.583 5.583 9 C 0.562 3.438 10 O -0.517 6.517 11 C -0.211 4.211 12 C -0.015 4.015 13 C -0.071 4.071 14 C -0.096 4.096 15 C -0.128 4.128 16 C -0.108 4.108 17 C -0.083 4.083 18 O -0.537 6.537 19 Si 0.950 3.050 20 H -0.250 1.250 21 H -0.253 1.253 22 H -0.252 1.252 23 C -0.092 4.092 24 C -0.092 4.092 25 C -0.259 4.259 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.378 0.622 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.377 0.623 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.053 0.947 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 -3.358 0.072 4.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.224 2.776 3 C -0.552 4.552 4 C -0.495 4.495 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.092 5.092 8 N -0.327 5.327 9 C 0.351 3.649 10 O -0.392 6.392 11 C -0.233 4.233 12 C -0.034 4.034 13 C -0.072 4.072 14 C -0.114 4.114 15 C -0.146 4.146 16 C -0.109 4.109 17 C -0.194 4.194 18 O -0.342 6.342 19 Si 0.773 3.227 20 H -0.174 1.174 21 H -0.177 1.177 22 H -0.176 1.176 23 C -0.110 4.110 24 C -0.110 4.110 25 C -0.432 4.432 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.216 0.784 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.224 0.776 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.071 0.929 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.859 -3.016 -0.129 3.545 hybrid contribution -1.136 -0.977 0.215 1.514 sum -2.995 -3.992 0.086 4.992 Atomic orbital electron populations 1.26115 1.20329 1.04547 1.04824 0.79241 0.65818 0.67723 0.64850 1.26025 1.07325 1.17694 1.04116 1.26395 1.00748 1.08034 1.14346 1.21186 0.96568 1.01163 0.94999 1.22578 1.02105 0.95169 0.90354 1.62945 1.13846 1.38313 0.94102 1.45509 1.33532 1.25153 1.28549 1.18154 0.79024 0.84692 0.82982 1.90818 1.61696 1.21994 1.64697 1.22824 1.00022 1.02365 0.98085 1.22391 0.92212 0.97943 0.90904 1.19061 0.96779 0.95423 0.95904 1.21332 0.99456 0.94710 0.95862 1.20996 0.96467 1.00107 0.96996 1.20488 0.96346 0.96403 0.97650 1.25024 1.06185 1.03588 0.84579 1.86535 1.31351 1.70979 1.45330 0.85676 0.79829 0.75822 0.81420 1.17366 1.17711 1.17560 1.21001 0.99862 0.94607 0.95485 1.21483 0.94700 0.99677 0.95124 1.28062 0.90793 1.06965 1.17421 0.91055 0.90693 0.91231 0.90328 0.91362 0.91362 0.90105 0.90741 0.90223 0.90884 0.90235 0.93815 0.78382 0.85348 0.84290 0.85198 0.85894 0.86258 0.77593 0.84958 0.84934 0.92892 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.83 8.65 101.05 0.87 1.71 16 2 Si 1.03 -2.08 12.01 -169.99 -2.04 -4.13 16 3 C -0.44 -0.03 8.65 101.05 0.87 0.85 16 4 C -0.41 0.63 5.04 37.64 0.19 0.82 16 5 C -0.10 0.03 5.74 -26.44 -0.15 -0.12 16 6 C 0.03 0.00 5.38 -4.32 -0.02 -0.02 16 7 N -0.28 -0.37 4.15 -56.97 -0.24 -0.61 16 8 N -0.58 -0.53 4.70 30.20 0.14 -0.39 16 9 C 0.56 1.66 7.85 -12.96 -0.10 1.55 16 10 O -0.52 -3.68 16.56 5.19 0.09 -3.60 16 11 C -0.21 -0.03 9.41 -37.50 -0.35 -0.39 16 12 C -0.01 -0.01 9.46 -37.15 -0.35 -0.36 16 13 C -0.07 -0.01 5.87 -105.06 -0.62 -0.63 16 14 C -0.10 0.05 9.41 -39.11 -0.37 -0.32 16 15 C -0.13 0.06 8.65 -39.65 -0.34 -0.28 16 16 C -0.11 0.03 5.36 -104.50 -0.56 -0.53 16 17 C -0.08 0.09 2.80 36.00 0.10 0.19 16 18 O -0.54 0.11 12.83 -35.23 -0.45 -0.34 16 19 Si 0.95 -1.12 25.12 -169.99 -4.27 -5.39 16 20 H -0.25 0.14 7.11 56.52 0.40 0.54 16 21 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 22 H -0.25 0.28 7.04 56.52 0.40 0.68 16 23 C -0.09 0.01 9.66 -39.65 -0.38 -0.37 16 24 C -0.09 0.01 9.80 -39.11 -0.38 -0.38 16 25 C -0.26 0.12 4.85 60.52 0.29 0.42 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.08 0.13 7.96 -51.93 -0.41 -0.29 16 30 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 31 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 32 H 0.08 -0.14 7.99 -51.93 -0.42 -0.56 16 33 H 0.07 -0.15 7.99 -51.93 -0.42 -0.56 16 34 H 0.08 0.06 7.97 -51.93 -0.41 -0.35 16 35 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 36 H 0.08 0.04 8.03 -51.93 -0.42 -0.38 16 37 H 0.04 -0.05 7.78 -51.93 -0.40 -0.46 16 38 H 0.38 -0.73 8.81 -185.15 -1.63 -2.36 16 39 H 0.13 -0.34 6.07 -52.49 -0.32 -0.66 16 40 H 0.14 0.16 7.52 -52.49 -0.39 -0.23 16 41 H 0.13 -0.34 6.17 -52.48 -0.32 -0.67 16 42 H 0.12 -0.22 4.84 -52.48 -0.25 -0.47 16 43 H 0.12 -0.21 7.96 -51.93 -0.41 -0.63 16 44 H 0.38 -1.26 8.70 45.56 0.40 -0.86 16 45 H 0.13 -0.13 8.06 -52.49 -0.42 -0.55 16 46 H 0.13 -0.20 8.06 -52.48 -0.42 -0.63 16 47 H 0.05 -0.09 7.92 -51.93 -0.41 -0.50 16 48 H 0.09 0.02 7.99 -51.93 -0.41 -0.39 16 LS Contribution 390.98 15.07 5.89 5.89 Total: 0.00 -7.86 390.98 -10.56 -18.42 By element: Atomic # 1 Polarization: -3.61 SS G_CDS: -8.38 Total: -11.99 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.30 Total: 2.13 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -0.09 Total: -1.00 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.37 Total: -3.94 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: -6.31 Total: -9.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -7.86 -10.56 -18.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12360594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.096 kcal (2) G-P(sol) polarization free energy of solvation -7.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds