Wall clock time and date at job start Sun Mar 7 2021 08:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86302 * 110.05882 * 2 1 4 4 C 1.87772 * 110.10326 * 238.56976 * 2 1 3 5 5 C 1.53930 * 106.88145 * 196.93423 * 4 2 1 6 6 C 1.52620 * 109.31054 * 57.20377 * 5 4 2 7 7 N 1.46354 * 111.89365 * 283.47909 * 6 5 4 8 8 N 1.36597 * 111.00439 * 203.19512 * 7 6 5 9 9 C 1.34777 * 120.00136 * 115.64904 * 8 7 6 10 10 O 1.21697 * 119.99910 * 0.02562 * 9 8 7 11 11 C 1.46425 * 120.00102 * 180.02562 * 9 8 7 12 12 C 1.34814 * 119.99908 * 180.02562 * 11 9 8 13 13 C 1.47210 * 119.99704 * 179.97438 * 12 11 9 14 14 C 1.39831 * 120.17126 * 359.72525 * 13 12 11 15 15 C 1.37896 * 119.82450 * 179.78685 * 14 13 12 16 16 C 1.38397 * 120.17383 * 0.46907 * 15 14 13 17 17 C 1.50692 * 119.83219 * 179.76369 * 16 15 14 18 18 O 1.42901 * 109.47145 * 245.02044 * 17 16 15 19 19 Si 1.86306 * 109.46982 * 5.01744 * 17 16 15 20 20 H 1.48507 * 109.46680 * 60.00414 * 19 17 16 21 21 H 1.48496 * 109.47307 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47334 * 300.00256 * 19 17 16 23 23 C 1.38409 * 120.34158 * 359.78241 * 16 15 14 24 24 C 1.37889 * 120.16890 * 359.97438 * 23 16 15 25 25 C 1.47726 * 111.30712 * 79.01876 * 7 6 5 26 26 H 1.08997 * 109.46901 * 298.63756 * 1 2 3 27 27 H 1.09005 * 109.46732 * 58.63878 * 1 2 3 28 28 H 1.08995 * 109.46671 * 178.63368 * 1 2 3 29 29 H 1.09000 * 109.47456 * 181.36346 * 3 2 1 30 30 H 1.09002 * 109.47079 * 301.36550 * 3 2 1 31 31 H 1.08997 * 109.47362 * 61.36560 * 3 2 1 32 32 H 1.09006 * 109.96179 * 77.59600 * 4 2 1 33 33 H 1.08997 * 109.96261 * 316.28202 * 4 2 1 34 34 H 1.09001 * 109.49861 * 297.25449 * 5 4 2 35 35 H 1.09001 * 109.50212 * 177.15933 * 5 4 2 36 36 H 1.09003 * 109.00076 * 162.86056 * 6 5 4 37 37 H 1.08996 * 109.00031 * 44.09897 * 6 5 4 38 38 H 0.97004 * 120.00144 * 295.65439 * 8 7 6 39 39 H 1.07996 * 120.00264 * 359.97438 * 11 9 8 40 40 H 1.07994 * 120.00068 * 0.02562 * 12 11 9 41 41 H 1.08003 * 120.08688 * 0.02562 * 14 13 12 42 42 H 1.08004 * 119.91141 * 180.22901 * 15 14 13 43 43 H 1.09002 * 109.47541 * 125.02040 * 17 16 15 44 44 H 0.96705 * 113.99939 * 60.00118 * 18 17 16 45 45 H 1.07994 * 119.91120 * 179.97438 * 23 16 15 46 46 H 1.08010 * 120.08415 * 179.97438 * 24 23 16 47 47 H 1.09002 * 109.94693 * 59.06572 * 25 7 6 48 48 H 1.08998 * 109.94856 * 180.23237 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5085 -0.9195 -1.5046 5 6 3.9854 -1.2519 -1.2258 6 6 4.0853 -2.0643 0.0623 7 7 3.9267 -1.2249 1.2507 8 7 4.5034 -1.8083 2.3428 9 6 5.5552 -1.2188 2.9452 10 8 5.9907 -0.1665 2.5164 11 6 6.1737 -1.8446 4.1156 12 6 7.2254 -1.2546 4.7185 13 6 7.8469 -1.8834 5.8955 14 6 7.3458 -3.0896 6.3947 15 6 7.9362 -3.6747 7.4950 16 6 9.0160 -3.0662 8.1108 17 6 9.6519 -3.7096 9.3160 18 8 9.4645 -2.8713 10.4580 19 14 8.8597 -5.3672 9.6256 20 1 9.0546 -6.2383 8.4388 21 1 9.4868 -6.0015 10.8128 22 1 7.4068 -5.1833 9.8715 23 6 9.5145 -1.8696 7.6258 24 6 8.9380 -1.2747 6.5235 25 6 2.5043 -0.9168 1.5043 26 1 -0.3633 0.4925 0.9019 27 1 -0.3633 0.5349 -0.8776 28 1 -0.3632 -1.0274 -0.0245 29 1 3.5917 1.7390 -0.0245 30 1 2.1242 2.2748 -0.8775 31 1 2.1641 2.2602 0.9019 32 1 2.4297 -0.2873 -2.3891 33 1 1.9410 -1.8386 -1.6507 34 1 4.5523 -0.3272 -1.1176 35 1 4.3904 -1.8326 -2.0546 36 1 5.0596 -2.5517 0.0998 37 1 3.3079 -2.8283 0.0613 38 1 4.1561 -2.6470 2.6849 39 1 5.7870 -2.7782 4.4965 40 1 7.6114 -0.3203 4.3384 41 1 6.5009 -3.5638 5.9174 42 1 7.5526 -4.6082 7.8794 43 1 10.7184 -3.8446 9.1355 44 1 8.5371 -2.7078 10.6780 45 1 10.3571 -1.4006 8.1121 46 1 9.3279 -0.3407 6.1464 47 1 1.9430 -1.8407 1.6440 48 1 2.4122 -0.2884 2.3901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12360594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:02 Heat of formation + Delta-G solvation = -27.079702 kcal Electronic energy + Delta-G solvation = -25549.204668 eV Core-core repulsion = 21921.979200 eV Total energy + Delta-G solvation = -3627.225468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07512 -40.54680 -38.63067 -37.73351 -35.05689 -34.90719 -32.32198 -31.91732 -30.87389 -29.32461 -28.35323 -27.57317 -27.17623 -25.16640 -24.08558 -23.43779 -22.04714 -21.79922 -20.52746 -18.90464 -18.45223 -18.09742 -17.06098 -16.76205 -16.63024 -16.24893 -15.98340 -15.42560 -15.29923 -15.15960 -14.89826 -14.84047 -14.61572 -14.37470 -14.33325 -13.97393 -13.81999 -13.80541 -13.49852 -13.31145 -13.19191 -13.11893 -13.03203 -12.97182 -12.25750 -12.17384 -12.04015 -12.03183 -11.97192 -11.56017 -11.36263 -11.35203 -10.81330 -10.78550 -10.40729 -10.35252 -10.18121 -9.99724 -9.67788 -9.26981 -0.56356 0.37278 0.88956 1.17624 1.45618 1.47097 1.52530 1.84411 1.91008 1.92017 2.18562 2.27535 2.61849 2.80475 3.35852 3.51777 3.62321 3.66054 3.82074 3.90835 4.01544 4.11711 4.18154 4.21613 4.33387 4.42368 4.45289 4.53262 4.60903 4.67944 4.74563 4.80181 4.81495 4.83000 4.84996 4.85517 4.92219 4.95981 5.07081 5.09133 5.14124 5.29915 5.36329 5.46829 5.47312 5.57755 5.58504 5.65862 5.83006 5.88787 6.26216 6.45712 6.69076 7.54936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.092 2.908 3 C -0.466 4.466 4 C -0.413 4.413 5 C -0.104 4.104 6 C 0.026 3.974 7 N -0.303 5.303 8 N -0.574 5.574 9 C 0.556 3.444 10 O -0.571 6.571 11 C -0.207 4.207 12 C -0.017 4.017 13 C -0.081 4.081 14 C -0.097 4.097 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.083 4.083 18 O -0.553 6.553 19 Si 0.983 3.017 20 H -0.256 1.256 21 H -0.279 1.279 22 H -0.248 1.248 23 C -0.102 4.102 24 C -0.101 4.101 25 C -0.270 4.270 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.395 0.605 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.153 0.847 42 H 0.137 0.863 43 H 0.124 0.876 44 H 0.389 0.611 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.070 0.930 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 -4.983 0.057 6.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.281 2.719 3 C -0.571 4.571 4 C -0.499 4.499 5 C -0.142 4.142 6 C -0.101 4.101 7 N -0.120 5.120 8 N -0.317 5.317 9 C 0.347 3.653 10 O -0.450 6.450 11 C -0.228 4.228 12 C -0.036 4.036 13 C -0.081 4.081 14 C -0.114 4.114 15 C -0.153 4.153 16 C -0.112 4.112 17 C -0.194 4.194 18 O -0.360 6.360 19 Si 0.807 3.193 20 H -0.180 1.180 21 H -0.204 1.204 22 H -0.172 1.172 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.442 4.442 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.235 0.765 39 H 0.179 0.821 40 H 0.143 0.857 41 H 0.170 0.830 42 H 0.154 0.846 43 H 0.142 0.858 44 H 0.238 0.762 45 H 0.154 0.846 46 H 0.157 0.843 47 H 0.089 0.911 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.341 -4.646 -0.139 5.724 hybrid contribution -0.651 -0.440 0.242 0.822 sum -3.991 -5.086 0.104 6.466 Atomic orbital electron populations 1.26134 1.19885 1.05166 1.04967 0.78314 0.65237 0.64800 0.63534 1.26346 1.06006 1.20716 1.04047 1.26454 0.99841 1.08829 1.14739 1.21205 0.97418 1.00424 0.95192 1.22578 1.02293 0.95364 0.89868 1.62925 1.15009 1.39458 0.94596 1.45416 1.32769 1.25410 1.28146 1.18658 0.79091 0.84141 0.83408 1.90791 1.63412 1.24395 1.66415 1.22896 0.99705 1.03271 0.96952 1.22357 0.92471 0.97596 0.91220 1.19091 0.97109 0.96022 0.95894 1.21603 0.99864 0.94236 0.95709 1.21200 0.96406 1.00639 0.97082 1.20630 0.96436 0.96319 0.97789 1.25092 1.06605 1.03527 0.84138 1.86502 1.32731 1.71173 1.45568 0.85206 0.79476 0.74842 0.79739 1.18002 1.20432 1.17185 1.21120 1.00228 0.94981 0.95662 1.21658 0.94841 1.00105 0.95259 1.28262 0.90012 1.07927 1.17952 0.91095 0.90427 0.90353 0.92525 0.90896 0.91957 0.89755 0.89398 0.92058 0.90298 0.91098 0.91944 0.76480 0.82114 0.85749 0.82976 0.84580 0.85823 0.76179 0.84571 0.84298 0.91132 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.29 8.65 113.37 0.98 3.27 16 2 Si 1.09 -4.66 12.01 68.60 0.82 -3.84 16 3 C -0.47 -0.79 8.65 113.37 0.98 0.19 16 4 C -0.41 1.59 5.04 72.30 0.36 1.95 16 5 C -0.10 0.04 5.74 30.78 0.18 0.21 16 6 C 0.03 0.00 5.38 86.28 0.46 0.46 16 7 N -0.30 -0.97 4.15 -334.16 -1.39 -2.35 16 8 N -0.57 -1.14 4.70 -176.58 -0.83 -1.98 16 9 C 0.56 3.88 7.85 86.37 0.68 4.55 16 10 O -0.57 -9.58 16.56 -4.34 -0.07 -9.65 16 11 C -0.21 -0.07 9.41 23.62 0.22 0.15 16 12 C -0.02 -0.03 9.46 23.84 0.23 0.19 16 13 C -0.08 -0.04 5.87 -20.15 -0.12 -0.16 16 14 C -0.10 0.21 9.41 22.57 0.21 0.42 16 15 C -0.14 0.26 8.65 22.23 0.19 0.45 16 16 C -0.11 0.09 5.36 -19.79 -0.11 -0.01 16 17 C -0.08 0.19 2.80 71.23 0.20 0.39 16 18 O -0.55 0.28 12.83 -148.98 -1.91 -1.63 16 19 Si 0.98 -2.75 25.12 68.60 1.72 -1.03 16 20 H -0.26 0.48 7.11 99.48 0.71 1.19 16 21 H -0.28 -0.38 7.11 99.48 0.71 0.32 16 22 H -0.25 0.87 7.04 99.48 0.70 1.57 16 23 C -0.10 -0.02 9.66 22.23 0.21 0.20 16 24 C -0.10 -0.05 9.80 22.57 0.22 0.17 16 25 C -0.27 0.32 4.85 127.53 0.62 0.94 16 26 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 27 H 0.08 -0.39 7.96 -2.38 -0.02 -0.41 16 28 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 29 H 0.06 0.34 7.96 -2.39 -0.02 0.33 16 30 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 31 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 32 H 0.08 -0.35 7.99 -2.38 -0.02 -0.37 16 33 H 0.09 -0.53 7.99 -2.39 -0.02 -0.55 16 34 H 0.06 0.20 7.97 -2.39 -0.02 0.18 16 35 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.07 0.10 8.03 -2.39 -0.02 0.08 16 37 H 0.06 -0.25 7.78 -2.39 -0.02 -0.27 16 38 H 0.39 -1.88 8.81 -215.49 -1.90 -3.78 16 39 H 0.16 -1.13 6.07 -2.91 -0.02 -1.15 16 40 H 0.12 0.59 7.52 -2.91 -0.02 0.56 16 41 H 0.15 -1.14 6.17 -2.91 -0.02 -1.15 16 42 H 0.14 -0.68 4.84 -2.91 -0.01 -0.70 16 43 H 0.12 -0.44 7.96 -2.39 -0.02 -0.46 16 44 H 0.39 -2.68 8.70 -74.05 -0.64 -3.32 16 45 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 46 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 47 H 0.07 -0.35 7.92 -2.39 -0.02 -0.37 16 48 H 0.08 0.08 7.99 -2.39 -0.02 0.06 16 Total: 0.00 -19.75 390.98 3.04 -16.70 By element: Atomic # 1 Polarization: -8.78 SS G_CDS: -0.83 Total: -9.61 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.53 Total: 13.38 kcal Atomic # 7 Polarization: -2.11 SS G_CDS: -2.22 Total: -4.33 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.98 Total: -11.28 kcal Atomic # 14 Polarization: -7.42 SS G_CDS: 2.55 Total: -4.87 kcal Total: -19.75 3.04 -16.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12360594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.377 kcal (2) G-P(sol) polarization free energy of solvation -19.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds