Wall clock time and date at job start Sun Mar 7 2021 08:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.98404 * 2 1 4 4 C 1.87520 * 110.00350 * 121.31283 * 2 1 3 5 5 C 1.53927 * 106.85160 * 163.09913 * 4 2 1 6 6 C 1.52628 * 109.31149 * 302.79593 * 5 4 2 7 7 N 1.46356 * 111.89131 * 76.52031 * 6 5 4 8 8 N 1.36594 * 110.99987 * 156.80226 * 7 6 5 9 9 C 1.34773 * 120.00389 * 235.56820 * 8 7 6 10 10 O 1.21573 * 119.99730 * 354.77123 * 9 8 7 11 11 C 1.47699 * 120.00324 * 174.77450 * 9 8 7 12 12 C 1.39621 * 120.15219 * 359.72342 * 11 9 8 13 13 C 1.38112 * 119.84815 * 179.74430 * 12 11 9 14 14 F 1.35093 * 119.91389 * 180.22974 * 13 12 11 15 15 C 1.38612 * 120.16453 * 0.53099 * 13 12 11 16 16 C 1.50698 * 119.84160 * 179.69778 * 15 13 12 17 17 O 1.42892 * 109.47147 * 75.02360 * 16 15 13 18 18 Si 1.86300 * 109.47155 * 315.02459 * 16 15 13 19 19 H 1.48500 * 109.47242 * 59.99895 * 18 16 15 20 20 H 1.48502 * 109.47176 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47259 * 299.99834 * 18 16 15 22 22 C 1.38230 * 120.31523 * 359.72674 * 15 13 12 23 23 C 1.38268 * 120.14866 * 0.02562 * 22 15 13 24 24 F 1.35100 * 120.08881 * 179.97438 * 23 22 15 25 25 C 1.47724 * 111.30598 * 280.98069 * 7 6 5 26 26 H 1.08998 * 109.46777 * 298.68854 * 1 2 3 27 27 H 1.08996 * 109.46789 * 58.69138 * 1 2 3 28 28 H 1.09002 * 109.46731 * 178.68387 * 1 2 3 29 29 H 1.09002 * 109.47000 * 181.31691 * 3 2 1 30 30 H 1.09004 * 109.47069 * 301.31074 * 3 2 1 31 31 H 1.08996 * 109.47271 * 61.31460 * 3 2 1 32 32 H 1.08998 * 109.97784 * 43.76045 * 4 2 1 33 33 H 1.09001 * 110.05505 * 282.47760 * 4 2 1 34 34 H 1.09002 * 109.49810 * 182.84519 * 5 4 2 35 35 H 1.09001 * 109.49646 * 62.74767 * 5 4 2 36 36 H 1.09004 * 108.99279 * 315.89680 * 6 5 4 37 37 H 1.08999 * 108.93251 * 197.10292 * 6 5 4 38 38 H 0.97006 * 119.99588 * 55.29935 * 8 7 6 39 39 H 1.07993 * 120.07246 * 359.97438 * 12 11 9 40 40 H 1.09006 * 109.46923 * 195.02405 * 16 15 13 41 41 H 0.96707 * 114.00133 * 300.00031 * 17 16 15 42 42 H 1.08005 * 119.92598 * 180.02562 * 22 15 13 43 43 H 1.09001 * 109.94750 * 179.68267 * 25 7 6 44 44 H 1.08998 * 109.94934 * 300.94062 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5045 -0.9158 1.5054 5 6 3.9817 -1.2490 1.2291 6 6 4.0832 -2.0637 -0.0576 7 7 3.9263 -1.2262 -1.2475 8 7 4.5044 -1.8116 -2.3378 9 6 5.4370 -1.1443 -3.0460 10 8 5.6953 0.0119 -2.7730 11 6 6.1451 -1.8176 -4.1536 12 6 5.8550 -3.1471 -4.4660 13 6 6.5171 -3.7689 -5.5064 14 9 6.2342 -5.0538 -5.8129 15 6 7.4757 -3.0798 -6.2328 16 6 8.1986 -3.7675 -7.3622 17 8 7.3275 -3.8752 -8.4898 18 14 8.7233 -5.4703 -6.8181 19 1 7.5240 -6.2617 -6.4433 20 1 9.4363 -6.1477 -7.9308 21 1 9.6286 -5.3585 -5.6462 22 6 7.7721 -1.7650 -5.9259 23 6 7.1135 -1.1282 -4.8902 24 9 7.4045 0.1566 -4.5909 25 6 2.5043 -0.9183 -1.5035 26 1 -0.3633 0.4933 0.9015 27 1 -0.3633 0.5340 -0.8780 28 1 -0.3633 -1.0274 -0.0236 29 1 3.5895 1.7411 -0.0236 30 1 2.1220 2.2748 -0.8780 31 1 2.1604 2.2609 0.9015 32 1 1.9367 -1.8345 1.6524 33 1 2.4245 -0.2835 2.3897 34 1 4.3854 -1.8284 2.0594 35 1 4.5489 -0.3246 1.1202 36 1 3.3056 -2.8275 -0.0561 37 1 5.0579 -2.5502 -0.0921 38 1 4.2465 -2.7092 -2.6002 39 1 5.1119 -3.6868 -3.8979 40 1 9.0790 -3.1866 -7.6372 41 1 6.5214 -4.3807 -8.3172 42 1 8.5198 -1.2339 -6.4963 43 1 2.4136 -0.2901 -2.3896 44 1 1.9429 -1.8422 -1.6423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_12360598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:14 Heat of formation + Delta-G solvation = -119.870478 kcal Electronic energy + Delta-G solvation = -28461.013908 eV Core-core repulsion = 24174.620538 eV Total energy + Delta-G solvation = -4286.393370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.57220 -49.96229 -41.37928 -40.11621 -38.52210 -37.66759 -35.05981 -33.56275 -31.46485 -31.37579 -29.43974 -28.42118 -27.91664 -27.61920 -25.11663 -24.61603 -23.36013 -22.02819 -21.83844 -19.76871 -19.23934 -18.67208 -18.23761 -17.71850 -17.63494 -17.20101 -16.85098 -16.54132 -16.18289 -16.00926 -15.70132 -15.47470 -15.33264 -14.96533 -14.85339 -14.66396 -14.56091 -14.39868 -14.12560 -14.03189 -13.86490 -13.61708 -13.41725 -13.29257 -13.17189 -13.10402 -13.01654 -12.55555 -12.21917 -12.15285 -12.09169 -11.47242 -11.30509 -10.93207 -10.88707 -10.78958 -10.44774 -10.41712 -10.21272 -9.84655 -9.80160 -0.82370 -0.37547 0.94639 1.26248 1.36436 1.39489 1.52620 1.68394 1.77509 1.85958 1.96951 2.32540 2.50611 2.70184 2.79147 3.01507 3.15367 3.26126 3.34164 3.48841 3.72122 3.87211 4.03636 4.11491 4.15428 4.28859 4.31632 4.41591 4.52560 4.56460 4.61297 4.62906 4.63764 4.66173 4.73445 4.77329 4.86258 4.92070 4.96388 5.18676 5.31901 5.33312 5.39918 5.68080 5.69351 6.14921 6.26432 6.27986 7.40501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.032 2.968 3 C -0.443 4.443 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.025 3.975 7 N -0.274 5.274 8 N -0.581 5.581 9 C 0.574 3.426 10 O -0.487 6.487 11 C -0.141 4.141 12 C -0.088 4.088 13 C 0.074 3.926 14 F -0.120 7.120 15 C -0.094 4.094 16 C -0.085 4.085 17 O -0.528 6.528 18 Si 0.938 3.062 19 H -0.227 1.227 20 H -0.249 1.249 21 H -0.249 1.249 22 C -0.113 4.113 23 C 0.161 3.839 24 F -0.104 7.104 25 C -0.261 4.261 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.377 0.623 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.378 0.622 42 H 0.160 0.840 43 H 0.092 0.908 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 -4.137 1.178 4.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.225 2.775 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.103 4.103 7 N -0.090 5.090 8 N -0.326 5.326 9 C 0.360 3.640 10 O -0.358 6.358 11 C -0.147 4.147 12 C -0.107 4.107 13 C 0.054 3.946 14 F -0.099 7.099 15 C -0.096 4.096 16 C -0.195 4.195 17 O -0.333 6.333 18 Si 0.757 3.243 19 H -0.149 1.149 20 H -0.173 1.173 21 H -0.172 1.172 22 C -0.132 4.132 23 C 0.140 3.860 24 F -0.081 7.081 25 C -0.434 4.434 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.216 0.784 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.226 0.774 42 H 0.178 0.822 43 H 0.110 0.890 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.889 -3.355 1.409 3.745 hybrid contribution -1.225 -1.150 -0.178 1.690 sum -2.113 -4.505 1.230 5.126 Atomic orbital electron populations 1.26118 1.20314 1.04537 1.04871 0.79210 0.65883 0.67754 0.64675 1.26026 1.07357 1.17671 1.04129 1.26383 1.00659 1.08128 1.14458 1.21189 0.96702 1.01143 0.94856 1.22585 1.02311 0.95266 0.90091 1.62982 1.14069 1.38285 0.93698 1.45408 1.41587 1.17701 1.27912 1.17588 0.79105 0.86162 0.81148 1.90876 1.62974 1.15379 1.66615 1.19864 1.00577 0.94534 0.99723 1.21126 0.99676 0.93447 0.96484 1.17364 0.99235 0.80257 0.97723 1.91612 1.92427 1.33588 1.92243 1.20415 0.96547 0.94603 0.98037 1.25094 0.96279 1.10997 0.87088 1.86591 1.35665 1.77752 1.33319 0.86087 0.81475 0.75770 0.80918 1.14921 1.17296 1.17228 1.20966 1.01489 0.93662 0.97058 1.17632 0.94323 0.79939 0.94145 1.91663 1.91398 1.33226 1.91862 1.28107 0.90702 1.07032 1.17593 0.90671 0.91031 0.91246 0.90296 0.91331 0.91351 0.90670 0.90002 0.90712 0.90163 0.93493 0.90014 0.78389 0.83253 0.85392 0.77447 0.82214 0.88977 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.91 8.65 101.05 0.87 1.78 16 2 Si 1.03 -2.37 11.99 -169.99 -2.04 -4.41 16 3 C -0.44 0.03 8.65 101.05 0.87 0.91 16 4 C -0.41 0.86 5.03 37.64 0.19 1.05 16 5 C -0.10 0.12 5.74 -26.44 -0.15 -0.03 16 6 C 0.03 -0.03 5.37 -4.31 -0.02 -0.05 16 7 N -0.27 -0.19 4.15 -56.96 -0.24 -0.43 16 8 N -0.58 -0.19 4.66 30.49 0.14 -0.05 16 9 C 0.57 1.66 7.87 -12.40 -0.10 1.56 16 10 O -0.49 -3.45 15.67 5.30 0.08 -3.37 16 11 C -0.14 -0.11 5.88 -104.92 -0.62 -0.73 16 12 C -0.09 0.15 9.51 -39.11 -0.37 -0.22 16 13 C 0.07 -0.09 6.60 -39.49 -0.26 -0.35 16 14 F -0.12 0.13 12.55 2.25 0.03 0.16 16 15 C -0.09 0.11 4.79 -104.49 -0.50 -0.39 16 16 C -0.09 0.15 2.80 36.00 0.10 0.25 16 17 O -0.53 0.37 12.88 -35.23 -0.45 -0.08 16 18 Si 0.94 -1.17 26.08 -169.99 -4.43 -5.60 16 19 H -0.23 0.20 5.28 56.52 0.30 0.50 16 20 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 21 H -0.25 0.09 7.11 56.52 0.40 0.49 16 22 C -0.11 0.09 9.63 -39.57 -0.38 -0.29 16 23 C 0.16 0.23 7.28 -38.97 -0.28 -0.05 16 24 F -0.10 -0.42 15.55 2.25 0.04 -0.39 16 25 C -0.26 0.20 4.86 60.52 0.29 0.49 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H 0.08 0.12 7.96 -51.93 -0.41 -0.30 16 30 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 32 H 0.07 -0.19 7.99 -51.93 -0.42 -0.61 16 33 H 0.08 -0.18 8.00 -51.93 -0.42 -0.60 16 34 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 35 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 36 H 0.05 -0.11 7.78 -51.93 -0.40 -0.51 16 37 H 0.08 -0.08 8.03 -51.93 -0.42 -0.50 16 38 H 0.38 -1.00 6.87 -185.15 -1.27 -2.28 16 39 H 0.15 -0.66 6.42 -52.49 -0.34 -1.00 16 40 H 0.13 -0.42 7.76 -51.93 -0.40 -0.82 16 41 H 0.38 -1.31 8.40 45.56 0.38 -0.93 16 42 H 0.16 -0.45 7.99 -52.48 -0.42 -0.87 16 43 H 0.09 0.03 7.99 -51.93 -0.41 -0.39 16 44 H 0.05 -0.11 7.92 -51.93 -0.41 -0.52 16 LS Contribution 364.72 15.07 5.50 5.50 Total: 0.00 -7.76 364.72 -8.47 -16.23 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: -6.74 Total: -11.48 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.35 Total: 3.92 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -0.09 Total: -0.48 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: -0.37 Total: -3.45 kcal Atomic # 9 Polarization: -0.29 SS G_CDS: 0.06 Total: -0.23 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: -6.47 Total: -10.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -7.76 -8.47 -16.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12360598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.640 kcal (2) G-P(sol) polarization free energy of solvation -7.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds