Wall clock time and date at job start Sun Mar 7 2021 08:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.98404 * 2 1 4 4 C 1.87520 * 110.00350 * 121.31283 * 2 1 3 5 5 C 1.53927 * 106.85160 * 163.09913 * 4 2 1 6 6 C 1.52628 * 109.31149 * 302.79593 * 5 4 2 7 7 N 1.46356 * 111.89131 * 76.52031 * 6 5 4 8 8 N 1.36594 * 110.99987 * 156.80226 * 7 6 5 9 9 C 1.34773 * 120.00389 * 235.56820 * 8 7 6 10 10 O 1.21573 * 119.99730 * 354.77123 * 9 8 7 11 11 C 1.47699 * 120.00324 * 174.77450 * 9 8 7 12 12 C 1.39621 * 120.15219 * 359.72342 * 11 9 8 13 13 C 1.38112 * 119.84815 * 179.74430 * 12 11 9 14 14 F 1.35093 * 119.91389 * 180.22974 * 13 12 11 15 15 C 1.38612 * 120.16453 * 0.53099 * 13 12 11 16 16 C 1.50698 * 119.84160 * 179.69778 * 15 13 12 17 17 O 1.42892 * 109.47147 * 75.02360 * 16 15 13 18 18 Si 1.86300 * 109.47155 * 315.02459 * 16 15 13 19 19 H 1.48500 * 109.47242 * 59.99895 * 18 16 15 20 20 H 1.48502 * 109.47176 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47259 * 299.99834 * 18 16 15 22 22 C 1.38230 * 120.31523 * 359.72674 * 15 13 12 23 23 C 1.38268 * 120.14866 * 0.02562 * 22 15 13 24 24 F 1.35100 * 120.08881 * 179.97438 * 23 22 15 25 25 C 1.47724 * 111.30598 * 280.98069 * 7 6 5 26 26 H 1.08998 * 109.46777 * 298.68854 * 1 2 3 27 27 H 1.08996 * 109.46789 * 58.69138 * 1 2 3 28 28 H 1.09002 * 109.46731 * 178.68387 * 1 2 3 29 29 H 1.09002 * 109.47000 * 181.31691 * 3 2 1 30 30 H 1.09004 * 109.47069 * 301.31074 * 3 2 1 31 31 H 1.08996 * 109.47271 * 61.31460 * 3 2 1 32 32 H 1.08998 * 109.97784 * 43.76045 * 4 2 1 33 33 H 1.09001 * 110.05505 * 282.47760 * 4 2 1 34 34 H 1.09002 * 109.49810 * 182.84519 * 5 4 2 35 35 H 1.09001 * 109.49646 * 62.74767 * 5 4 2 36 36 H 1.09004 * 108.99279 * 315.89680 * 6 5 4 37 37 H 1.08999 * 108.93251 * 197.10292 * 6 5 4 38 38 H 0.97006 * 119.99588 * 55.29935 * 8 7 6 39 39 H 1.07993 * 120.07246 * 359.97438 * 12 11 9 40 40 H 1.09006 * 109.46923 * 195.02405 * 16 15 13 41 41 H 0.96707 * 114.00133 * 300.00031 * 17 16 15 42 42 H 1.08005 * 119.92598 * 180.02562 * 22 15 13 43 43 H 1.09001 * 109.94750 * 179.68267 * 25 7 6 44 44 H 1.08998 * 109.94934 * 300.94062 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5045 -0.9158 1.5054 5 6 3.9817 -1.2490 1.2291 6 6 4.0832 -2.0637 -0.0576 7 7 3.9263 -1.2262 -1.2475 8 7 4.5044 -1.8116 -2.3378 9 6 5.4370 -1.1443 -3.0460 10 8 5.6953 0.0119 -2.7730 11 6 6.1451 -1.8176 -4.1536 12 6 5.8550 -3.1471 -4.4660 13 6 6.5171 -3.7689 -5.5064 14 9 6.2342 -5.0538 -5.8129 15 6 7.4757 -3.0798 -6.2328 16 6 8.1986 -3.7675 -7.3622 17 8 7.3275 -3.8752 -8.4898 18 14 8.7233 -5.4703 -6.8181 19 1 7.5240 -6.2617 -6.4433 20 1 9.4363 -6.1477 -7.9308 21 1 9.6286 -5.3585 -5.6462 22 6 7.7721 -1.7650 -5.9259 23 6 7.1135 -1.1282 -4.8902 24 9 7.4045 0.1566 -4.5909 25 6 2.5043 -0.9183 -1.5035 26 1 -0.3633 0.4933 0.9015 27 1 -0.3633 0.5340 -0.8780 28 1 -0.3633 -1.0274 -0.0236 29 1 3.5895 1.7411 -0.0236 30 1 2.1220 2.2748 -0.8780 31 1 2.1604 2.2609 0.9015 32 1 1.9367 -1.8345 1.6524 33 1 2.4245 -0.2835 2.3897 34 1 4.3854 -1.8284 2.0594 35 1 4.5489 -0.3246 1.1202 36 1 3.3056 -2.8275 -0.0561 37 1 5.0579 -2.5502 -0.0921 38 1 4.2465 -2.7092 -2.6002 39 1 5.1119 -3.6868 -3.8979 40 1 9.0790 -3.1866 -7.6372 41 1 6.5214 -4.3807 -8.3172 42 1 8.5198 -1.2339 -6.4963 43 1 2.4136 -0.2901 -2.3896 44 1 1.9429 -1.8422 -1.6423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12360598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:13 Heat of formation + Delta-G solvation = -115.474436 kcal Electronic energy + Delta-G solvation = -28460.823281 eV Core-core repulsion = 24174.620538 eV Total energy + Delta-G solvation = -4286.202743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.49644 -50.11485 -41.46016 -40.08499 -38.58550 -37.62940 -35.06961 -33.52350 -31.43692 -31.35202 -29.33449 -28.35415 -27.86638 -27.51053 -25.06691 -24.54236 -23.34035 -21.94869 -21.91385 -19.77757 -19.20988 -18.66674 -18.20949 -17.71540 -17.62460 -17.22768 -16.84710 -16.60592 -16.16836 -16.01004 -15.66150 -15.46101 -15.32458 -14.93141 -14.76413 -14.60497 -14.56453 -14.36348 -14.02499 -13.97347 -13.80330 -13.50602 -13.38703 -13.19692 -13.13030 -13.05133 -12.98068 -12.48855 -12.18771 -12.03575 -11.97656 -11.54937 -11.25636 -10.93367 -10.81001 -10.78863 -10.38694 -10.32794 -10.22306 -9.83361 -9.73458 -0.82251 -0.31497 1.05127 1.31560 1.38673 1.46772 1.54537 1.79749 1.90732 1.92866 2.10202 2.26544 2.61392 2.75323 2.82661 3.07943 3.24938 3.32644 3.51166 3.55180 3.80839 4.01053 4.14991 4.20220 4.30335 4.35209 4.41102 4.53776 4.61049 4.68285 4.70831 4.73378 4.79727 4.81246 4.81988 4.84454 4.84935 4.91805 5.10318 5.31087 5.37122 5.47818 5.57890 5.65816 5.79191 6.07491 6.23260 6.52872 7.35251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.092 2.908 3 C -0.467 4.467 4 C -0.411 4.411 5 C -0.104 4.104 6 C 0.025 3.975 7 N -0.302 5.302 8 N -0.568 5.568 9 C 0.571 3.429 10 O -0.541 6.541 11 C -0.150 4.150 12 C -0.074 4.074 13 C 0.075 3.925 14 F -0.118 7.118 15 C -0.092 4.092 16 C -0.081 4.081 17 O -0.541 6.541 18 Si 0.965 3.035 19 H -0.230 1.230 20 H -0.270 1.270 21 H -0.262 1.262 22 C -0.106 4.106 23 C 0.136 3.864 24 F -0.127 7.127 25 C -0.272 4.272 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.394 0.606 39 H 0.178 0.822 40 H 0.144 0.856 41 H 0.389 0.611 42 H 0.178 0.822 43 H 0.076 0.924 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -6.055 1.273 6.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.281 2.719 3 C -0.572 4.572 4 C -0.498 4.498 5 C -0.142 4.142 6 C -0.103 4.103 7 N -0.118 5.118 8 N -0.313 5.313 9 C 0.358 3.642 10 O -0.417 6.417 11 C -0.155 4.155 12 C -0.093 4.093 13 C 0.056 3.944 14 F -0.096 7.096 15 C -0.093 4.093 16 C -0.191 4.191 17 O -0.348 6.348 18 Si 0.788 3.212 19 H -0.152 1.152 20 H -0.195 1.195 21 H -0.186 1.186 22 C -0.125 4.125 23 C 0.115 3.885 24 F -0.105 7.105 25 C -0.443 4.443 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.236 0.764 39 H 0.196 0.804 40 H 0.162 0.838 41 H 0.238 0.762 42 H 0.196 0.804 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.966 -5.299 1.497 5.847 hybrid contribution -0.882 -0.596 -0.234 1.089 sum -2.848 -5.894 1.264 6.667 Atomic orbital electron populations 1.26150 1.20045 1.05151 1.04914 0.78300 0.65201 0.64763 0.63645 1.26365 1.06018 1.20875 1.03942 1.26403 0.99986 1.08873 1.14488 1.21215 0.97317 1.00505 0.95194 1.22619 1.02942 0.95420 0.89271 1.62954 1.14990 1.39648 0.94235 1.45277 1.40572 1.18100 1.27388 1.17957 0.79114 0.85699 0.81394 1.90844 1.64862 1.17676 1.68356 1.19775 1.00828 0.95438 0.99480 1.21298 0.99580 0.92285 0.96167 1.17418 0.99076 0.80281 0.97644 1.91623 1.92384 1.33407 1.92203 1.20532 0.96398 0.94365 0.98037 1.25110 0.96611 1.10663 0.86696 1.86572 1.36408 1.78071 1.33780 0.85714 0.80508 0.75711 0.79298 1.15248 1.19547 1.18592 1.21113 1.01342 0.93764 0.96290 1.17985 0.95589 0.79426 0.95495 1.91600 1.91760 1.34868 1.92252 1.28293 0.90188 1.07983 1.17879 0.90402 0.91300 0.90294 0.92499 0.92186 0.90911 0.89194 0.89686 0.89894 0.91971 0.91429 0.90249 0.76433 0.80427 0.83792 0.76188 0.80432 0.90563 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.30 8.65 113.37 0.98 3.28 16 2 Si 1.09 -5.02 11.99 68.60 0.82 -4.20 16 3 C -0.47 -0.87 8.65 113.37 0.98 0.11 16 4 C -0.41 2.10 5.03 72.29 0.36 2.47 16 5 C -0.10 0.24 5.74 30.78 0.18 0.42 16 6 C 0.02 -0.06 5.37 86.28 0.46 0.40 16 7 N -0.30 -0.59 4.15 -334.14 -1.39 -1.97 16 8 N -0.57 -0.57 4.66 -175.70 -0.82 -1.39 16 9 C 0.57 4.19 7.87 86.74 0.68 4.87 16 10 O -0.54 -9.33 15.67 -3.95 -0.06 -9.39 16 11 C -0.15 -0.35 5.88 -20.05 -0.12 -0.47 16 12 C -0.07 0.31 9.51 22.57 0.21 0.53 16 13 C 0.08 -0.27 6.60 22.33 0.15 -0.12 16 14 F -0.12 0.44 12.55 44.97 0.56 1.00 16 15 C -0.09 0.28 4.79 -19.78 -0.09 0.19 16 16 C -0.08 0.37 2.80 71.24 0.20 0.57 16 17 O -0.54 1.31 12.88 -148.98 -1.92 -0.61 16 18 Si 0.97 -2.86 26.08 68.60 1.79 -1.07 16 19 H -0.23 0.61 5.28 99.48 0.52 1.14 16 20 H -0.27 -0.15 7.11 99.48 0.71 0.55 16 21 H -0.26 0.23 7.11 99.48 0.71 0.94 16 22 C -0.11 0.16 9.63 22.27 0.21 0.38 16 23 C 0.14 0.57 7.28 22.67 0.17 0.73 16 24 F -0.13 -1.37 15.55 44.97 0.70 -0.67 16 25 C -0.27 0.40 4.86 127.53 0.62 1.02 16 26 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 27 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 28 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 29 H 0.06 0.35 7.96 -2.39 -0.02 0.33 16 30 H 0.06 0.18 7.96 -2.38 -0.02 0.16 16 31 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 32 H 0.09 -0.67 7.99 -2.39 -0.02 -0.69 16 33 H 0.08 -0.45 8.00 -2.39 -0.02 -0.47 16 34 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 36 H 0.07 -0.45 7.78 -2.39 -0.02 -0.47 16 37 H 0.08 -0.17 8.03 -2.39 -0.02 -0.19 16 38 H 0.39 -2.46 6.87 -215.49 -1.48 -3.94 16 39 H 0.18 -1.92 6.42 -2.91 -0.02 -1.94 16 40 H 0.14 -1.13 7.76 -2.38 -0.02 -1.15 16 41 H 0.39 -3.12 8.40 -74.05 -0.62 -3.74 16 42 H 0.18 -1.05 7.99 -2.91 -0.02 -1.07 16 43 H 0.08 0.14 7.99 -2.39 -0.02 0.12 16 44 H 0.07 -0.41 7.92 -2.39 -0.02 -0.43 16 Total: 0.00 -20.49 364.72 4.20 -16.29 By element: Atomic # 1 Polarization: -11.89 SS G_CDS: -0.49 Total: -12.38 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 5.00 Total: 14.38 kcal Atomic # 7 Polarization: -1.16 SS G_CDS: -2.20 Total: -3.36 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.98 Total: -9.99 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 1.26 Total: 0.34 kcal Atomic # 14 Polarization: -7.88 SS G_CDS: 2.61 Total: -5.27 kcal Total: -20.49 4.20 -16.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12360598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.183 kcal (2) G-P(sol) polarization free energy of solvation -20.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds