Wall clock time and date at job start Sun Mar 7 2021 08:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35645 * 117.00248 * 2 1 4 4 C 1.38664 * 120.14876 * 0.02562 * 3 2 1 5 5 C 1.38110 * 120.08547 * 180.02562 * 4 3 2 6 6 C 1.38505 * 120.38886 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.84954 * 180.02562 * 6 5 4 8 8 O 1.42897 * 109.46741 * 245.01900 * 7 6 5 9 9 Si 1.86299 * 109.47074 * 5.01551 * 7 6 5 10 10 H 1.48503 * 109.47032 * 60.00320 * 9 7 6 11 11 H 1.48499 * 109.47181 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47273 * 300.00342 * 9 7 6 13 13 C 1.37828 * 120.30026 * 0.02562 * 6 5 4 14 14 C 1.39670 * 119.90730 * 359.97438 * 13 6 5 15 15 C 1.47538 * 120.18999 * 179.97438 * 14 13 6 16 16 O 1.21595 * 119.99929 * 179.97438 * 15 14 13 17 17 N 1.34773 * 120.00192 * 0.02562 * 15 14 13 18 18 N 1.36601 * 120.00086 * 174.97287 * 17 15 14 19 19 C 1.46358 * 110.99819 * 235.45083 * 18 17 15 20 20 C 1.52631 * 111.88904 * 156.80210 * 19 18 17 21 21 C 1.53936 * 109.30837 * 76.52714 * 20 19 18 22 22 Si 1.87527 * 106.84509 * 302.79409 * 21 20 19 23 23 C 1.86307 * 110.00059 * 163.09955 * 22 21 20 24 24 C 1.86296 * 110.00390 * 284.40225 * 22 21 20 25 25 C 1.47720 * 110.99840 * 111.10540 * 18 17 15 26 26 H 1.08996 * 109.46931 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47104 * 299.99747 * 1 2 3 28 28 H 1.08997 * 109.46658 * 60.00149 * 1 2 3 29 29 H 1.07999 * 119.95963 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.80211 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47199 * 125.01843 * 7 6 5 32 32 H 0.96700 * 114.00032 * 60.00198 * 8 7 6 33 33 H 1.07995 * 120.04687 * 179.70646 * 13 6 5 34 34 H 0.97001 * 119.99682 * 354.97721 * 17 15 14 35 35 H 1.09000 * 109.00414 * 277.42765 * 19 18 17 36 36 H 1.09004 * 108.99802 * 36.26564 * 19 18 17 37 37 H 1.08997 * 109.49880 * 196.47149 * 20 19 18 38 38 H 1.09000 * 109.49647 * 316.57521 * 20 19 18 39 39 H 1.09000 * 109.97977 * 62.12822 * 21 20 19 40 40 H 1.08996 * 109.97468 * 183.37358 * 21 20 19 41 41 H 1.09003 * 109.46769 * 59.99916 * 23 22 21 42 42 H 1.08994 * 109.46999 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.46860 * 300.00250 * 23 22 21 44 44 H 1.08997 * 109.47066 * 59.99986 * 24 22 21 45 45 H 1.09000 * 109.47225 * 180.02562 * 24 22 21 46 46 H 1.09005 * 109.47471 * 299.99909 * 24 22 21 47 47 H 1.08998 * 109.95158 * 303.85617 * 25 18 17 48 48 H 1.09005 * 109.95067 * 65.11285 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2928 2.3735 0.0005 5 6 1.9212 3.6034 0.0000 6 6 3.3039 3.6836 -0.0005 7 6 3.9769 5.0320 -0.0005 8 8 4.6982 5.2042 -1.2220 9 14 2.6888 6.3690 0.1538 10 1 1.9392 6.1900 1.4232 11 1 3.3520 7.6977 0.1532 12 1 1.7484 6.2851 -0.9924 13 6 4.0671 2.5359 -0.0011 14 6 3.4446 1.2857 -0.0005 15 6 4.2555 0.0531 -0.0017 16 8 3.7099 -1.0336 -0.0007 17 7 5.6009 0.1316 -0.0027 18 7 6.3515 -1.0051 0.0999 19 6 7.2822 -0.9191 1.2261 20 6 7.7072 -2.2994 1.7197 21 6 8.7433 -2.8911 0.7471 22 14 7.9393 -2.9286 -0.9467 23 6 9.2394 -3.1366 -2.2648 24 6 6.7107 -4.3261 -1.0381 25 6 7.0628 -1.2856 -1.1640 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 0.2142 2.3191 0.0014 30 1 1.3309 4.5077 0.0000 31 1 4.6672 5.0935 0.8408 32 1 4.1457 5.1611 -2.0145 33 1 5.1449 2.6033 -0.0063 34 1 6.0362 0.9953 -0.0763 35 1 8.1678 -0.3660 0.9132 36 1 6.8006 -0.3837 2.0444 37 1 8.1491 -2.2108 2.7121 38 1 6.8364 -2.9534 1.7657 39 1 9.6332 -2.2621 0.7230 40 1 9.0101 -3.9016 1.0566 41 1 9.7758 -4.0713 -2.1017 42 1 8.7630 -3.1577 -3.2449 43 1 9.9400 -2.3028 -2.2188 44 1 5.9415 -4.1838 -0.2791 45 1 6.2492 -4.3401 -2.0255 46 1 7.2229 -5.2723 -0.8633 47 1 6.3496 -1.3505 -1.9857 48 1 7.7908 -0.4993 -1.3635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_12496546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:25 Heat of formation + Delta-G solvation = -76.151569 kcal Electronic energy + Delta-G solvation = -28013.802551 eV Core-core repulsion = 24193.993116 eV Total energy + Delta-G solvation = -3819.809435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70940 -40.33574 -39.20573 -38.16715 -37.15475 -34.82292 -33.02104 -31.91262 -30.99496 -29.35963 -28.57062 -28.34980 -27.54603 -26.21917 -25.68935 -24.23459 -22.59413 -21.77332 -21.29863 -19.59314 -18.51895 -18.21095 -18.06001 -16.96600 -16.85083 -16.56453 -16.27362 -16.07375 -15.91928 -15.29332 -15.22427 -15.03200 -14.77297 -14.58608 -14.49663 -14.30416 -14.03722 -13.78937 -13.74562 -13.51735 -13.44859 -13.21130 -13.16913 -13.08799 -12.94327 -12.43893 -12.33015 -12.19116 -12.06554 -12.03559 -11.98602 -11.68337 -11.19688 -10.81100 -10.67975 -10.42706 -10.28641 -10.19757 -9.94651 -9.61928 -9.27347 -0.23123 0.19675 1.06168 1.33956 1.42616 1.46150 1.80044 1.83269 1.87062 1.96543 2.14517 2.23836 2.59850 2.80412 3.34348 3.42837 3.51292 3.63349 3.66209 3.96913 3.99314 4.04677 4.18068 4.21500 4.21793 4.35737 4.45325 4.50152 4.53550 4.58952 4.64155 4.67462 4.70053 4.70827 4.76248 4.87811 4.88940 4.95129 4.99822 5.05153 5.07671 5.22725 5.27428 5.41161 5.46645 5.50123 5.74921 5.86069 6.29878 6.45486 6.45709 6.61686 7.74913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.278 6.278 3 C 0.194 3.806 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.169 4.169 7 C -0.075 4.075 8 O -0.539 6.539 9 Si 0.947 3.053 10 H -0.249 1.249 11 H -0.252 1.252 12 H -0.251 1.251 13 C -0.018 4.018 14 C -0.169 4.169 15 C 0.576 3.424 16 O -0.490 6.490 17 N -0.587 5.587 18 N -0.273 5.273 19 C 0.026 3.974 20 C -0.100 4.100 21 C -0.409 4.409 22 Si 1.030 2.970 23 C -0.450 4.450 24 C -0.443 4.443 25 C -0.260 4.260 26 H 0.106 0.894 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.377 0.623 33 H 0.135 0.865 34 H 0.375 0.625 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 2.899 -0.057 2.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.188 6.188 3 C 0.145 3.855 4 C -0.231 4.231 5 C -0.074 4.074 6 C -0.170 4.170 7 C -0.186 4.186 8 O -0.344 6.344 9 Si 0.769 3.231 10 H -0.173 1.173 11 H -0.176 1.176 12 H -0.175 1.175 13 C -0.037 4.037 14 C -0.174 4.174 15 C 0.363 3.637 16 O -0.362 6.362 17 N -0.333 5.333 18 N -0.089 5.089 19 C -0.102 4.102 20 C -0.139 4.139 21 C -0.496 4.496 22 Si 1.223 2.777 23 C -0.558 4.558 24 C -0.551 4.551 25 C -0.433 4.433 26 H 0.124 0.876 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.224 0.776 33 H 0.153 0.847 34 H 0.215 0.785 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.678 2.262 0.542 2.423 hybrid contribution 0.387 1.024 -0.611 1.254 sum -0.291 3.286 -0.069 3.299 Atomic orbital electron populations 1.23236 0.78204 1.04791 1.01390 1.86393 1.21177 1.25105 1.86136 1.19050 0.90849 0.85065 0.90517 1.21209 1.00703 0.91551 1.09680 1.21031 0.93914 0.97573 0.94924 1.20080 0.93404 0.96147 1.07353 1.24895 1.04195 0.98754 0.90718 1.86515 1.37825 1.95102 1.15007 0.85722 0.77310 0.78332 0.81688 1.17293 1.17617 1.17510 1.20973 0.99825 0.89816 0.93112 1.19327 0.90834 0.93749 1.13524 1.17714 0.80483 0.88594 0.76937 1.90828 1.70785 1.28432 1.46111 1.45490 1.05296 1.05059 1.77472 1.62932 1.23346 1.19482 1.03165 1.22563 0.94674 0.99241 0.93731 1.21185 0.99010 0.94932 0.98737 1.26377 1.03620 1.03879 1.15686 0.79227 0.66011 0.65570 0.66881 1.26117 1.12179 1.04857 1.12655 1.26018 1.11594 1.12513 1.04969 1.28075 1.04147 1.16750 0.94370 0.87607 0.92325 0.92359 0.84184 0.85479 0.86372 0.77567 0.84721 0.78535 0.93673 0.90110 0.90859 0.90242 0.90714 0.90125 0.90757 0.91072 0.91249 0.90285 0.91386 0.91453 0.89138 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -1.10 8.57 -40.51 -0.35 -1.45 16 3 C 0.19 0.54 6.70 -38.70 -0.26 0.28 16 4 C -0.21 -0.06 9.03 -39.47 -0.36 -0.41 16 5 C -0.06 0.03 8.65 -39.53 -0.34 -0.31 16 6 C -0.17 0.09 5.35 -104.67 -0.56 -0.47 16 7 C -0.07 0.12 2.79 36.01 0.10 0.22 16 8 O -0.54 0.52 12.83 -35.23 -0.45 0.06 16 9 Si 0.95 -1.52 25.12 -169.99 -4.27 -5.79 16 10 H -0.25 0.25 7.11 56.52 0.40 0.65 16 11 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 12 H -0.25 0.39 7.04 56.52 0.40 0.79 16 13 C -0.02 0.00 9.16 -39.20 -0.36 -0.36 16 14 C -0.17 -0.46 5.89 -104.84 -0.62 -1.07 16 15 C 0.58 2.71 7.87 -12.47 -0.10 2.61 16 16 O -0.49 -4.23 15.49 -16.59 -0.26 -4.49 16 17 N -0.59 -1.23 4.66 30.46 0.14 -1.09 16 18 N -0.27 -0.57 4.15 -56.96 -0.24 -0.81 16 19 C 0.03 0.01 5.38 -4.31 -0.02 -0.02 16 20 C -0.10 0.02 5.74 -26.43 -0.15 -0.14 16 21 C -0.41 0.49 5.03 37.65 0.19 0.68 16 22 Si 1.03 -1.42 11.99 -169.99 -2.04 -3.46 16 23 C -0.45 0.57 8.65 101.05 0.87 1.44 16 24 C -0.44 -0.30 8.65 101.05 0.87 0.57 16 25 C -0.26 -0.14 4.86 60.52 0.29 0.16 16 26 H 0.11 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 28 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 29 H 0.14 -0.27 6.30 -52.49 -0.33 -0.60 16 30 H 0.13 -0.27 4.83 -52.49 -0.25 -0.53 16 31 H 0.12 -0.30 7.96 -51.93 -0.41 -0.72 16 32 H 0.38 -1.47 8.70 45.56 0.40 -1.07 16 33 H 0.14 -0.23 6.41 -52.49 -0.34 -0.57 16 34 H 0.38 -0.18 6.87 -185.15 -1.27 -1.46 16 35 H 0.04 -0.04 7.78 -51.93 -0.40 -0.45 16 36 H 0.08 0.04 8.03 -51.93 -0.42 -0.38 16 37 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.08 0.07 7.96 -51.93 -0.41 -0.34 16 39 H 0.07 -0.13 7.99 -51.93 -0.42 -0.54 16 40 H 0.08 -0.12 7.99 -51.93 -0.42 -0.53 16 41 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 42 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 43 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 44 H 0.08 0.18 7.96 -51.93 -0.41 -0.23 16 45 H 0.07 0.07 7.96 -51.93 -0.41 -0.35 16 46 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 47 H 0.09 0.15 7.99 -51.93 -0.41 -0.26 16 48 H 0.05 -0.03 7.92 -51.93 -0.41 -0.44 16 LS Contribution 383.75 15.07 5.78 5.78 Total: 0.00 -8.60 383.75 -9.14 -17.75 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -8.02 Total: -10.66 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 0.56 Total: 4.16 kcal Atomic # 7 Polarization: -1.81 SS G_CDS: -0.09 Total: -1.90 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -1.06 Total: -5.87 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: -6.31 Total: -9.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -8.60 -9.14 -17.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12496546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.406 kcal (2) G-P(sol) polarization free energy of solvation -8.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds