Wall clock time and date at job start Sun Mar 7 2021 08:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35645 * 117.00248 * 2 1 4 4 C 1.38664 * 120.14876 * 0.02562 * 3 2 1 5 5 C 1.38110 * 120.08547 * 180.02562 * 4 3 2 6 6 C 1.38505 * 120.38886 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.84954 * 180.02562 * 6 5 4 8 8 O 1.42897 * 109.46741 * 245.01900 * 7 6 5 9 9 Si 1.86299 * 109.47074 * 5.01551 * 7 6 5 10 10 H 1.48503 * 109.47032 * 60.00320 * 9 7 6 11 11 H 1.48499 * 109.47181 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47273 * 300.00342 * 9 7 6 13 13 C 1.37828 * 120.30026 * 0.02562 * 6 5 4 14 14 C 1.39670 * 119.90730 * 359.97438 * 13 6 5 15 15 C 1.47538 * 120.18999 * 179.97438 * 14 13 6 16 16 O 1.21595 * 119.99929 * 179.97438 * 15 14 13 17 17 N 1.34773 * 120.00192 * 0.02562 * 15 14 13 18 18 N 1.36601 * 120.00086 * 174.97287 * 17 15 14 19 19 C 1.46358 * 110.99819 * 235.45083 * 18 17 15 20 20 C 1.52631 * 111.88904 * 156.80210 * 19 18 17 21 21 C 1.53936 * 109.30837 * 76.52714 * 20 19 18 22 22 Si 1.87527 * 106.84509 * 302.79409 * 21 20 19 23 23 C 1.86307 * 110.00059 * 163.09955 * 22 21 20 24 24 C 1.86296 * 110.00390 * 284.40225 * 22 21 20 25 25 C 1.47720 * 110.99840 * 111.10540 * 18 17 15 26 26 H 1.08996 * 109.46931 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47104 * 299.99747 * 1 2 3 28 28 H 1.08997 * 109.46658 * 60.00149 * 1 2 3 29 29 H 1.07999 * 119.95963 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.80211 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47199 * 125.01843 * 7 6 5 32 32 H 0.96700 * 114.00032 * 60.00198 * 8 7 6 33 33 H 1.07995 * 120.04687 * 179.70646 * 13 6 5 34 34 H 0.97001 * 119.99682 * 354.97721 * 17 15 14 35 35 H 1.09000 * 109.00414 * 277.42765 * 19 18 17 36 36 H 1.09004 * 108.99802 * 36.26564 * 19 18 17 37 37 H 1.08997 * 109.49880 * 196.47149 * 20 19 18 38 38 H 1.09000 * 109.49647 * 316.57521 * 20 19 18 39 39 H 1.09000 * 109.97977 * 62.12822 * 21 20 19 40 40 H 1.08996 * 109.97468 * 183.37358 * 21 20 19 41 41 H 1.09003 * 109.46769 * 59.99916 * 23 22 21 42 42 H 1.08994 * 109.46999 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.46860 * 300.00250 * 23 22 21 44 44 H 1.08997 * 109.47066 * 59.99986 * 24 22 21 45 45 H 1.09000 * 109.47225 * 180.02562 * 24 22 21 46 46 H 1.09005 * 109.47471 * 299.99909 * 24 22 21 47 47 H 1.08998 * 109.95158 * 303.85617 * 25 18 17 48 48 H 1.09005 * 109.95067 * 65.11285 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2928 2.3735 0.0005 5 6 1.9212 3.6034 0.0000 6 6 3.3039 3.6836 -0.0005 7 6 3.9769 5.0320 -0.0005 8 8 4.6982 5.2042 -1.2220 9 14 2.6888 6.3690 0.1538 10 1 1.9392 6.1900 1.4232 11 1 3.3520 7.6977 0.1532 12 1 1.7484 6.2851 -0.9924 13 6 4.0671 2.5359 -0.0011 14 6 3.4446 1.2857 -0.0005 15 6 4.2555 0.0531 -0.0017 16 8 3.7099 -1.0336 -0.0007 17 7 5.6009 0.1316 -0.0027 18 7 6.3515 -1.0051 0.0999 19 6 7.2822 -0.9191 1.2261 20 6 7.7072 -2.2994 1.7197 21 6 8.7433 -2.8911 0.7471 22 14 7.9393 -2.9286 -0.9467 23 6 9.2394 -3.1366 -2.2648 24 6 6.7107 -4.3261 -1.0381 25 6 7.0628 -1.2856 -1.1640 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 0.2142 2.3191 0.0014 30 1 1.3309 4.5077 0.0000 31 1 4.6672 5.0935 0.8408 32 1 4.1457 5.1611 -2.0145 33 1 5.1449 2.6033 -0.0063 34 1 6.0362 0.9953 -0.0763 35 1 8.1678 -0.3660 0.9132 36 1 6.8006 -0.3837 2.0444 37 1 8.1491 -2.2108 2.7121 38 1 6.8364 -2.9534 1.7657 39 1 9.6332 -2.2621 0.7230 40 1 9.0101 -3.9016 1.0566 41 1 9.7758 -4.0713 -2.1017 42 1 8.7630 -3.1577 -3.2449 43 1 9.9400 -2.3028 -2.2188 44 1 5.9415 -4.1838 -0.2791 45 1 6.2492 -4.3401 -2.0255 46 1 7.2229 -5.2723 -0.8633 47 1 6.3496 -1.3505 -1.9857 48 1 7.7908 -0.4993 -1.3635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12496546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:24 Heat of formation + Delta-G solvation = -72.356787 kcal Electronic energy + Delta-G solvation = -28013.637997 eV Core-core repulsion = 24193.993116 eV Total energy + Delta-G solvation = -3819.644881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.81116 -40.48476 -39.21327 -38.36875 -37.11432 -34.93366 -33.09267 -31.90750 -31.06641 -29.32469 -28.53512 -28.34748 -27.53767 -26.15807 -25.77574 -24.26850 -22.59209 -21.81471 -21.46356 -19.65522 -18.55803 -18.25190 -18.12138 -17.01273 -16.93056 -16.62131 -16.29590 -16.04503 -15.88184 -15.37561 -15.18765 -15.11280 -14.78662 -14.61507 -14.56149 -14.33933 -13.96480 -13.79866 -13.70089 -13.48903 -13.45903 -13.18611 -13.13504 -13.10677 -12.97470 -12.43365 -12.21766 -12.12627 -12.03324 -12.02112 -11.95437 -11.60608 -11.32584 -10.81078 -10.79000 -10.38927 -10.30839 -10.26111 -10.08759 -9.67501 -9.32435 -0.30054 0.18312 1.19852 1.44984 1.47719 1.54432 1.77081 1.85909 1.92517 1.94944 2.16724 2.24241 2.62601 2.67744 3.34457 3.50535 3.54383 3.66835 3.73831 3.95053 4.02172 4.08346 4.19419 4.27702 4.33231 4.37855 4.42983 4.54710 4.61379 4.66591 4.69029 4.71517 4.75557 4.80535 4.82331 4.85417 4.85775 4.89641 4.93224 5.05133 5.11601 5.23024 5.31455 5.48580 5.52850 5.58551 5.66276 5.84602 6.22370 6.28990 6.47388 6.72417 7.54997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.173 3.827 4 C -0.211 4.211 5 C -0.055 4.055 6 C -0.166 4.166 7 C -0.071 4.071 8 O -0.552 6.552 9 Si 0.976 3.024 10 H -0.255 1.255 11 H -0.277 1.277 12 H -0.248 1.248 13 C -0.014 4.014 14 C -0.191 4.191 15 C 0.571 3.429 16 O -0.543 6.543 17 N -0.577 5.577 18 N -0.299 5.299 19 C 0.025 3.975 20 C -0.103 4.103 21 C -0.410 4.410 22 Si 1.090 2.910 23 C -0.452 4.452 24 C -0.464 4.464 25 C -0.273 4.273 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.161 0.839 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.389 0.611 33 H 0.151 0.849 34 H 0.389 0.611 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 4.378 -0.092 4.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.125 3.875 4 C -0.230 4.230 5 C -0.073 4.073 6 C -0.167 4.167 7 C -0.182 4.182 8 O -0.359 6.359 9 Si 0.801 3.199 10 H -0.180 1.180 11 H -0.202 1.202 12 H -0.172 1.172 13 C -0.032 4.032 14 C -0.196 4.196 15 C 0.360 3.640 16 O -0.419 6.419 17 N -0.323 5.323 18 N -0.116 5.116 19 C -0.102 4.102 20 C -0.141 4.141 21 C -0.496 4.496 22 Si 1.279 2.721 23 C -0.561 4.561 24 C -0.570 4.570 25 C -0.444 4.444 26 H 0.126 0.874 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.164 0.836 31 H 0.147 0.853 32 H 0.238 0.762 33 H 0.169 0.831 34 H 0.230 0.770 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.390 3.759 0.494 3.811 hybrid contribution 0.013 0.603 -0.610 0.858 sum 0.403 4.362 -0.117 4.382 Atomic orbital electron populations 1.23447 0.76524 1.05505 1.02804 1.86349 1.23209 1.26333 1.86528 1.19353 0.91211 0.85518 0.91467 1.21433 1.01689 0.90908 1.08951 1.21309 0.94178 0.97952 0.93819 1.20262 0.93535 0.96405 1.06465 1.24938 1.04461 0.97775 0.91009 1.86491 1.38666 1.95020 1.15716 0.85306 0.76676 0.76664 0.81278 1.17954 1.20215 1.17202 1.21112 1.00698 0.89039 0.92369 1.19380 0.91041 0.93758 1.15406 1.18152 0.81217 0.88683 0.75983 1.90786 1.71837 1.30318 1.48973 1.45388 1.04802 1.05854 1.76252 1.62926 1.24344 1.19953 1.04359 1.22601 0.94897 0.99734 0.92979 1.21209 0.98796 0.94452 0.99669 1.26389 1.03742 1.04479 1.15005 0.78340 0.64350 0.62517 0.66899 1.26128 1.12196 1.05513 1.12263 1.26332 1.12138 1.14832 1.03666 1.28322 1.03979 1.18906 0.93203 0.87398 0.90863 0.90863 0.82150 0.83597 0.85332 0.76165 0.83117 0.76980 0.91786 0.90620 0.89903 0.92001 0.89238 0.89519 0.90245 0.91292 0.90348 0.92566 0.92194 0.90755 0.90952 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -3.20 8.57 -68.68 -0.59 -3.79 16 3 C 0.17 1.20 6.70 22.84 0.15 1.35 16 4 C -0.21 -0.08 9.03 22.34 0.20 0.12 16 5 C -0.05 0.11 8.65 22.30 0.19 0.30 16 6 C -0.17 0.31 5.35 -19.90 -0.11 0.20 16 7 C -0.07 0.32 2.79 71.24 0.20 0.52 16 8 O -0.55 1.73 12.83 -148.98 -1.91 -0.18 16 9 Si 0.98 -4.22 25.12 68.60 1.72 -2.49 16 10 H -0.26 0.82 7.11 99.48 0.71 1.53 16 11 H -0.28 0.03 7.11 99.48 0.71 0.74 16 12 H -0.25 1.19 7.04 99.48 0.70 1.89 16 13 C -0.01 -0.01 9.16 22.52 0.21 0.20 16 14 C -0.19 -1.31 5.89 -20.01 -0.12 -1.43 16 15 C 0.57 6.78 7.87 86.70 0.68 7.46 16 16 O -0.54 -11.40 15.49 16.90 0.26 -11.14 16 17 N -0.58 -3.26 4.66 -175.81 -0.82 -4.08 16 18 N -0.30 -1.66 4.15 -334.13 -1.39 -3.04 16 19 C 0.03 0.02 5.38 86.28 0.46 0.48 16 20 C -0.10 0.00 5.74 30.79 0.18 0.18 16 21 C -0.41 1.32 5.03 72.30 0.36 1.69 16 22 Si 1.09 -2.77 11.99 68.60 0.82 -1.94 16 23 C -0.45 1.59 8.65 113.37 0.98 2.57 16 24 C -0.46 -1.58 8.65 113.37 0.98 -0.60 16 25 C -0.27 -0.50 4.86 127.53 0.62 0.12 16 26 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.07 -0.25 7.66 -2.39 -0.02 -0.27 16 28 H 0.07 -0.26 7.66 -2.39 -0.02 -0.28 16 29 H 0.16 -0.75 6.30 -2.91 -0.02 -0.77 16 30 H 0.15 -0.89 4.83 -2.91 -0.01 -0.91 16 31 H 0.13 -0.85 7.96 -2.39 -0.02 -0.87 16 32 H 0.39 -3.50 8.70 -74.06 -0.64 -4.14 16 33 H 0.15 -0.59 6.41 -2.91 -0.02 -0.61 16 34 H 0.39 -0.19 6.87 -215.49 -1.48 -1.67 16 35 H 0.06 -0.20 7.78 -2.39 -0.02 -0.22 16 36 H 0.08 0.12 8.03 -2.38 -0.02 0.10 16 37 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 39 H 0.09 -0.50 7.99 -2.39 -0.02 -0.52 16 40 H 0.09 -0.34 7.99 -2.39 -0.02 -0.36 16 41 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 43 H 0.08 -0.38 7.96 -2.39 -0.02 -0.39 16 44 H 0.06 0.45 7.96 -2.39 -0.02 0.43 16 45 H 0.06 0.27 7.96 -2.39 -0.02 0.25 16 46 H 0.07 0.10 7.96 -2.38 -0.02 0.08 16 47 H 0.07 0.39 7.99 -2.39 -0.02 0.37 16 48 H 0.07 -0.12 7.92 -2.38 -0.02 -0.14 16 Total: 0.00 -22.60 383.75 3.81 -18.79 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: -0.40 Total: -6.42 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.11 Total: 14.29 kcal Atomic # 7 Polarization: -4.91 SS G_CDS: -2.20 Total: -7.12 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -2.24 Total: -15.10 kcal Atomic # 14 Polarization: -6.98 SS G_CDS: 2.55 Total: -4.44 kcal Total: -22.60 3.81 -18.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12496546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.571 kcal (2) G-P(sol) polarization free energy of solvation -22.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds