Wall clock time and date at job start Sun Mar 7 2021 09:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86292 * 110.06409 * 2 1 4 4 C 1.87522 * 109.99896 * 238.63390 * 2 1 3 5 5 C 1.53933 * 106.84716 * 196.90341 * 4 2 1 6 6 C 1.52623 * 109.31098 * 57.20651 * 5 4 2 7 7 N 1.46358 * 111.89218 * 283.47495 * 6 5 4 8 8 N 1.36594 * 111.00256 * 203.19883 * 7 6 5 9 9 C 1.34774 * 120.00299 * 111.12359 * 8 7 6 10 10 O 1.21570 * 120.00125 * 354.97487 * 9 8 7 11 11 C 1.47723 * 120.00229 * 174.97550 * 9 8 7 12 12 C 1.39630 * 120.11787 * 359.97438 * 11 9 8 13 13 C 1.37861 * 119.87831 * 179.72903 * 12 11 9 14 14 C 1.38634 * 120.12150 * 0.22786 * 13 12 11 15 15 F 1.35092 * 119.88359 * 180.02562 * 14 13 12 16 16 C 1.38684 * 120.23672 * 0.04972 * 14 13 12 17 17 C 1.50698 * 119.93800 * 179.97438 * 16 14 13 18 18 O 1.42892 * 109.47508 * 75.00003 * 17 16 14 19 19 Si 1.86302 * 109.47039 * 314.99373 * 17 16 14 20 20 H 1.48497 * 109.46652 * 60.00451 * 19 17 16 21 21 H 1.48500 * 109.47053 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47042 * 300.00407 * 19 17 16 23 23 C 1.37816 * 120.11983 * 359.97438 * 16 14 13 24 24 C 1.47726 * 111.30251 * 79.01917 * 7 6 5 25 25 H 1.09012 * 109.47148 * 298.63734 * 1 2 3 26 26 H 1.08995 * 109.47021 * 58.63372 * 1 2 3 27 27 H 1.09002 * 109.47521 * 178.64100 * 1 2 3 28 28 H 1.08998 * 109.47087 * 181.36699 * 3 2 1 29 29 H 1.09007 * 109.46982 * 301.36283 * 3 2 1 30 30 H 1.09005 * 109.47463 * 61.36177 * 3 2 1 31 31 H 1.08996 * 109.97931 * 316.23500 * 4 2 1 32 32 H 1.08996 * 109.97749 * 77.48376 * 4 2 1 33 33 H 1.08995 * 109.49807 * 177.15753 * 5 4 2 34 34 H 1.09002 * 109.49613 * 297.22028 * 5 4 2 35 35 H 1.09004 * 108.99396 * 162.85941 * 6 5 4 36 36 H 1.08991 * 108.99720 * 44.09869 * 6 5 4 37 37 H 0.96999 * 120.00300 * 291.12135 * 8 7 6 38 38 H 1.07999 * 120.05884 * 359.97438 * 12 11 9 39 39 H 1.08001 * 119.93676 * 180.25588 * 13 12 11 40 40 H 1.09009 * 109.46907 * 195.00047 * 17 16 14 41 41 H 0.96708 * 114.00035 * 299.99626 * 18 17 16 42 42 H 1.07999 * 120.05995 * 179.97438 * 23 16 14 43 43 H 1.08997 * 109.94413 * 59.07154 * 24 7 6 44 44 H 1.09005 * 109.94685 * 180.23071 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5043 -0.9172 -1.5046 5 6 3.9815 -1.2502 -1.2280 6 6 4.0830 -2.0637 0.0594 7 7 3.9262 -1.2251 1.2486 8 7 4.5042 -1.8096 2.3395 9 6 5.6119 -1.2699 2.8855 10 8 6.1493 -0.3175 2.3545 11 6 6.1732 -1.8357 4.1293 12 6 5.5578 -2.9293 4.7417 13 6 6.0891 -3.4569 5.8993 14 6 7.2294 -2.9008 6.4580 15 9 7.7462 -3.4219 7.5922 16 6 7.8413 -1.8109 5.8571 17 6 9.0803 -1.2113 6.4705 18 8 10.1988 -2.0627 6.2140 19 14 8.8409 -1.0377 8.3099 20 1 8.5916 -2.3752 8.9049 21 1 10.0615 -0.4462 8.9143 22 1 7.6785 -0.1528 8.5764 23 6 7.3184 -1.2753 4.6999 24 6 2.5042 -0.9169 1.5043 25 1 -0.3634 0.4926 0.9020 26 1 -0.3633 0.5349 -0.8774 27 1 -0.3634 -1.0274 -0.0244 28 1 3.5918 1.7387 -0.0245 29 1 2.1243 2.2746 -0.8776 30 1 2.1641 2.2602 0.9020 31 1 1.9365 -1.8361 -1.6507 32 1 2.4231 -0.2850 -2.3888 33 1 4.3852 -1.8304 -2.0577 34 1 4.5489 -0.3258 -1.1205 35 1 5.0572 -2.5514 0.0951 36 1 3.3054 -2.8274 0.0587 37 1 4.1175 -2.6131 2.7213 38 1 4.6696 -3.3636 4.3071 39 1 5.6162 -4.3054 6.3714 40 1 9.2633 -0.2294 6.0337 41 1 10.1050 -2.9549 6.5749 42 1 7.7954 -0.4263 4.2330 43 1 1.9429 -1.8407 1.6441 44 1 2.4133 -0.2892 2.3908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12496548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:52 Heat of formation + Delta-G solvation = -75.639738 kcal Electronic energy + Delta-G solvation = -25759.277072 eV Core-core repulsion = 21944.255667 eV Total energy + Delta-G solvation = -3815.021405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.46177 -41.49641 -39.99783 -38.45757 -37.65337 -35.03090 -33.15394 -32.32661 -30.98734 -29.30643 -28.33419 -27.53255 -27.00927 -25.71292 -23.93319 -23.51343 -21.86416 -21.53940 -19.40103 -18.92507 -18.56900 -17.88266 -17.61758 -17.10572 -16.72446 -16.37243 -15.83777 -15.56892 -15.48022 -15.10680 -14.98300 -14.79702 -14.73169 -14.44129 -14.33599 -14.02612 -13.95888 -13.78614 -13.48911 -13.41128 -13.17372 -13.09938 -12.98092 -12.88904 -12.41628 -12.14926 -12.02289 -11.96173 -11.44059 -11.26874 -10.85663 -10.79597 -10.67209 -10.42813 -10.23010 -10.14091 -9.88712 -9.63614 -0.54240 -0.01493 1.07018 1.38645 1.42456 1.45029 1.61999 1.84295 1.89020 1.92229 2.15928 2.55257 2.63416 2.94658 3.27086 3.30225 3.54427 3.56832 3.62191 3.93352 4.02525 4.08724 4.16931 4.33312 4.44370 4.54427 4.61978 4.69134 4.74310 4.74901 4.82034 4.83166 4.86244 4.86875 4.87390 4.93648 4.96703 5.05300 5.11321 5.31583 5.48992 5.56466 5.60429 5.67918 5.81356 6.18543 6.35110 6.53054 7.45109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.096 2.904 3 C -0.467 4.467 4 C -0.416 4.416 5 C -0.104 4.104 6 C 0.026 3.974 7 N -0.301 5.301 8 N -0.571 5.571 9 C 0.574 3.426 10 O -0.556 6.556 11 C -0.150 4.150 12 C -0.043 4.043 13 C -0.147 4.147 14 C 0.109 3.891 15 F -0.126 7.126 16 C -0.162 4.162 17 C -0.081 4.081 18 O -0.546 6.546 19 Si 0.968 3.032 20 H -0.230 1.230 21 H -0.272 1.272 22 H -0.264 1.264 23 C -0.022 4.022 24 C -0.270 4.270 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.129 0.871 41 H 0.387 0.613 42 H 0.141 0.859 43 H 0.075 0.925 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 -4.992 -0.101 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.285 2.715 3 C -0.572 4.572 4 C -0.501 4.501 5 C -0.142 4.142 6 C -0.102 4.102 7 N -0.118 5.118 8 N -0.316 5.316 9 C 0.362 3.638 10 O -0.433 6.433 11 C -0.154 4.154 12 C -0.061 4.061 13 C -0.165 4.165 14 C 0.090 3.910 15 F -0.105 7.105 16 C -0.163 4.163 17 C -0.191 4.191 18 O -0.353 6.353 19 Si 0.791 3.209 20 H -0.152 1.152 21 H -0.197 1.197 22 H -0.188 1.188 23 C -0.041 4.041 24 C -0.442 4.442 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.236 0.764 38 H 0.187 0.813 39 H 0.191 0.809 40 H 0.147 0.853 41 H 0.235 0.765 42 H 0.159 0.841 43 H 0.093 0.907 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.811 -3.317 0.131 6.692 hybrid contribution -0.306 -1.394 0.287 1.455 sum -6.117 -4.710 0.418 7.732 Atomic orbital electron populations 1.26152 1.19977 1.05176 1.04952 0.78231 0.65121 0.64724 0.63444 1.26360 1.06046 1.20743 1.04078 1.26469 0.99816 1.08895 1.14958 1.21195 0.97415 1.00430 0.95197 1.22592 1.02268 0.95428 0.89892 1.62962 1.15225 1.39231 0.94379 1.45355 1.28280 1.29435 1.28530 1.18245 0.79452 0.82545 0.83572 1.90774 1.60239 1.28932 1.63330 1.19938 0.98785 0.99984 0.96714 1.21490 0.98851 0.92414 0.93357 1.21421 0.95255 1.02586 0.97240 1.18095 0.94746 0.94167 0.84035 1.91580 1.85963 1.85678 1.47239 1.20304 1.00152 0.97949 0.97938 1.25019 0.84480 0.97434 1.12164 1.86538 1.39522 1.27726 1.81547 0.85704 0.79744 0.81437 0.74037 1.15228 1.19709 1.18794 1.21033 0.92980 0.98080 0.92010 1.28269 0.89543 1.08238 1.18111 0.91014 0.90580 0.90328 0.92467 0.91045 0.91807 0.89400 0.89884 0.90506 0.92028 0.91316 0.91733 0.76404 0.81284 0.80851 0.85289 0.76456 0.84137 0.90662 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.85 8.65 113.37 0.98 3.83 16 2 Si 1.10 -6.29 11.99 68.60 0.82 -5.46 16 3 C -0.47 -0.15 8.65 113.37 0.98 0.83 16 4 C -0.42 1.97 5.04 72.30 0.36 2.33 16 5 C -0.10 0.11 5.74 30.78 0.18 0.29 16 6 C 0.03 -0.03 5.38 86.28 0.46 0.43 16 7 N -0.30 -0.40 4.15 -334.15 -1.39 -1.79 16 8 N -0.57 -0.08 4.65 -175.69 -0.82 -0.89 16 9 C 0.57 3.41 7.87 86.75 0.68 4.09 16 10 O -0.56 -8.53 16.67 -3.93 -0.07 -8.60 16 11 C -0.15 -0.19 5.87 -20.09 -0.12 -0.31 16 12 C -0.04 0.24 9.53 22.52 0.21 0.45 16 13 C -0.15 0.76 10.01 22.28 0.22 0.98 16 14 C 0.11 -0.08 6.63 22.47 0.15 0.07 16 15 F -0.13 -0.02 12.58 44.97 0.57 0.55 16 16 C -0.16 -0.22 4.78 -19.86 -0.09 -0.31 16 17 C -0.08 -0.09 2.80 71.24 0.20 0.11 16 18 O -0.55 -1.51 12.88 -148.98 -1.92 -3.43 16 19 Si 0.97 1.27 26.09 68.60 1.79 3.06 16 20 H -0.23 -0.28 5.28 99.48 0.53 0.25 16 21 H -0.27 -1.20 7.11 99.48 0.71 -0.50 16 22 H -0.26 -0.84 7.11 99.48 0.71 -0.14 16 23 C -0.02 -0.07 9.21 22.52 0.21 0.14 16 24 C -0.27 0.97 4.85 127.53 0.62 1.58 16 25 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 26 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 27 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 28 H 0.06 0.27 7.96 -2.39 -0.02 0.25 16 29 H 0.07 -0.06 7.96 -2.38 -0.02 -0.08 16 30 H 0.06 0.05 7.96 -2.38 -0.02 0.03 16 31 H 0.09 -0.61 7.99 -2.39 -0.02 -0.63 16 32 H 0.08 -0.40 7.99 -2.39 -0.02 -0.41 16 33 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 35 H 0.07 0.06 8.03 -2.38 -0.02 0.04 16 36 H 0.06 -0.35 7.78 -2.39 -0.02 -0.37 16 37 H 0.39 -2.78 6.87 -215.50 -1.48 -4.26 16 38 H 0.17 -2.17 6.41 -2.91 -0.02 -2.18 16 39 H 0.17 -1.82 8.06 -2.91 -0.02 -1.85 16 40 H 0.13 -0.05 7.77 -2.38 -0.02 -0.07 16 41 H 0.39 -1.26 8.41 -74.05 -0.62 -1.88 16 42 H 0.14 0.67 7.59 -2.91 -0.02 0.65 16 43 H 0.08 -0.58 7.92 -2.39 -0.02 -0.60 16 44 H 0.09 -0.19 7.99 -2.38 -0.02 -0.21 16 Total: 0.00 -19.08 360.22 3.53 -15.56 By element: Atomic # 1 Polarization: -12.98 SS G_CDS: -0.51 Total: -13.50 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.05 Total: 14.51 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -2.20 Total: -2.68 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.98 Total: -12.03 kcal Atomic # 9 Polarization: -0.02 SS G_CDS: 0.57 Total: 0.55 kcal Atomic # 14 Polarization: -5.02 SS G_CDS: 2.61 Total: -2.41 kcal Total: -19.08 3.53 -15.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12496548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.082 kcal (2) G-P(sol) polarization free energy of solvation -19.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds