Wall clock time and date at job start Sun Mar 7 2021 09:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86295 * 110.06586 * 2 1 4 4 C 1.87530 * 110.00059 * 238.63519 * 2 1 3 5 5 C 1.53927 * 106.84824 * 196.90294 * 4 2 1 6 6 C 1.52626 * 109.31241 * 57.20566 * 5 4 2 7 7 N 1.46363 * 111.89016 * 283.47830 * 6 5 4 8 8 N 1.36600 * 110.99666 * 203.19679 * 7 6 5 9 9 C 1.34777 * 120.00024 * 111.71570 * 8 7 6 10 10 O 1.21282 * 119.99840 * 5.00212 * 9 8 7 11 11 C 1.50695 * 120.00090 * 185.00041 * 9 8 7 12 12 N 1.46506 * 109.47487 * 180.02562 * 11 9 8 13 13 C 1.35032 * 125.93000 * 124.99627 * 12 11 9 14 14 C 1.35082 * 107.97627 * 179.97438 * 13 12 11 15 15 C 1.50702 * 126.07642 * 180.02562 * 14 13 12 16 16 O 1.42899 * 109.47491 * 104.80038 * 15 14 13 17 17 Si 1.86299 * 109.47154 * 344.80053 * 15 14 13 18 18 H 1.48505 * 109.47136 * 59.99778 * 17 15 14 19 19 H 1.48498 * 109.47454 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47302 * 300.00161 * 17 15 14 21 21 C 1.40841 * 107.85032 * 359.97438 * 14 13 12 22 22 C 1.48426 * 126.03917 * 179.97438 * 21 14 13 23 23 C 1.39329 * 120.11475 * 137.13655 * 22 21 14 24 24 C 1.38022 * 119.87754 * 179.97438 * 23 22 21 25 25 C 1.38326 * 120.11849 * 359.97438 * 24 23 22 26 26 C 1.38316 * 120.23888 * 0.02565 * 25 24 23 27 27 C 1.38015 * 120.12485 * 359.97438 * 26 25 24 28 28 N 1.31621 * 107.92658 * 0.22975 * 21 14 13 29 29 C 1.47717 * 111.30553 * 79.02091 * 7 6 5 30 30 H 1.09001 * 109.46944 * 298.63591 * 1 2 3 31 31 H 1.09003 * 109.47342 * 58.63266 * 1 2 3 32 32 H 1.08995 * 109.47355 * 178.63866 * 1 2 3 33 33 H 1.08992 * 109.47583 * 181.36616 * 3 2 1 34 34 H 1.09008 * 109.46830 * 301.36655 * 3 2 1 35 35 H 1.09005 * 109.47213 * 61.36020 * 3 2 1 36 36 H 1.09002 * 109.97401 * 316.23938 * 4 2 1 37 37 H 1.09003 * 109.97542 * 77.47900 * 4 2 1 38 38 H 1.09004 * 109.49718 * 177.15598 * 5 4 2 39 39 H 1.09000 * 109.49963 * 297.22285 * 5 4 2 40 40 H 1.09000 * 108.99958 * 162.85501 * 6 5 4 41 41 H 1.08998 * 108.99933 * 44.09842 * 6 5 4 42 42 H 0.96995 * 120.00216 * 291.71054 * 8 7 6 43 43 H 1.09000 * 109.47048 * 59.99534 * 11 9 8 44 44 H 1.09007 * 109.47379 * 300.00296 * 11 9 8 45 45 H 1.08000 * 126.01370 * 359.97438 * 13 12 11 46 46 H 1.08997 * 109.47299 * 224.80050 * 15 14 13 47 47 H 0.96703 * 113.99689 * 300.00671 * 16 15 14 48 48 H 1.07996 * 120.06024 * 359.95959 * 23 22 21 49 49 H 1.07995 * 119.94306 * 180.02562 * 24 23 22 50 50 H 1.07999 * 119.88039 * 179.74481 * 25 24 23 51 51 H 1.08009 * 119.93547 * 179.97438 * 26 25 24 52 52 H 1.08005 * 120.06504 * 180.02562 * 27 26 25 53 53 H 1.08995 * 109.95382 * 59.06183 * 29 7 6 54 54 H 1.09006 * 109.94411 * 180.32159 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5022 1.7499 0.0000 4 6 2.5044 -0.9172 -1.5047 5 6 3.9815 -1.2502 -1.2281 6 6 4.0830 -2.0637 0.0593 7 7 3.9261 -1.2251 1.2486 8 7 4.5043 -1.8097 2.3394 9 6 5.6051 -1.2632 2.8927 10 8 6.0296 -0.2048 2.4799 11 6 6.3084 -1.9674 4.0243 12 7 7.4665 -1.1760 4.4474 13 6 7.7144 -0.7427 5.7020 14 6 8.8746 -0.0511 5.6826 15 6 9.5328 0.6114 6.8654 16 8 10.6548 -0.1679 7.2845 17 14 8.3095 0.7412 8.2646 18 1 7.8519 -0.6181 8.6498 19 1 8.9578 1.3945 9.4299 20 1 7.1435 1.5510 7.8292 21 6 9.3605 -0.0601 4.3607 22 6 10.6111 0.5827 3.8856 23 6 11.4497 -0.0897 2.9992 24 6 12.6112 0.5129 2.5601 25 6 12.9429 1.7824 2.9981 26 6 12.1139 2.4544 3.8781 27 6 10.9501 1.8612 4.3235 28 7 8.5069 -0.7347 3.6199 29 6 2.5043 -0.9170 1.5043 30 1 -0.3633 0.4925 0.9020 31 1 -0.3634 0.5349 -0.8775 32 1 -0.3634 -1.0273 -0.0244 33 1 3.5917 1.7387 -0.0245 34 1 2.1243 2.2747 -0.8776 35 1 2.1641 2.2602 0.9020 36 1 1.9365 -1.8360 -1.6507 37 1 2.4230 -0.2849 -2.3889 38 1 4.3852 -1.8304 -2.0579 39 1 4.5489 -0.3258 -1.1205 40 1 5.0572 -2.5514 0.0950 41 1 3.3054 -2.8275 0.0587 42 1 4.1225 -2.6180 2.7159 43 1 6.6417 -2.9497 3.6897 44 1 5.6218 -2.0830 4.8630 45 1 7.0942 -0.9182 6.5687 46 1 9.8686 1.6090 6.5827 47 1 10.4297 -1.0698 7.5512 48 1 11.1915 -1.0808 2.6565 49 1 13.2618 -0.0072 1.8727 50 1 13.8548 2.2486 2.6553 51 1 12.3779 3.4453 4.2173 52 1 10.3033 2.3870 5.0103 53 1 1.9428 -1.8407 1.6440 54 1 2.4135 -0.2879 2.3898 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12622748.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:03 Heat of formation + Delta-G solvation = 44.320990 kcal Electronic energy + Delta-G solvation = -33941.824508 eV Core-core repulsion = 29619.315866 eV Total energy + Delta-G solvation = -4322.508642 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 388.184 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.50612 -40.96472 -39.78833 -38.58322 -37.63577 -35.00809 -34.74442 -32.49353 -32.13625 -31.61631 -31.22783 -29.36263 -28.60181 -28.38836 -27.54755 -26.08458 -24.93863 -23.86774 -23.41892 -22.03108 -21.79391 -21.57616 -20.98116 -19.03987 -18.49772 -18.16795 -17.62433 -17.20218 -16.84374 -16.46267 -16.28555 -15.97610 -15.72746 -15.63014 -15.39094 -15.25495 -14.99542 -14.76560 -14.47224 -14.44408 -14.30777 -14.27602 -14.02726 -13.99714 -13.84732 -13.64312 -13.53051 -13.29053 -13.22298 -13.13675 -12.98143 -12.47772 -12.37797 -12.18357 -12.07813 -12.06746 -12.01430 -11.77339 -11.55567 -11.43668 -10.97667 -10.84597 -10.60495 -10.40337 -10.23618 -10.20092 -9.85814 -9.78063 -9.64871 -9.30775 0.12790 0.48285 0.74526 1.19250 1.26638 1.48045 1.51170 1.53532 1.58218 1.72046 1.83986 1.87852 1.98763 2.15257 2.59091 2.89953 3.21691 3.40834 3.63606 3.64369 3.70253 3.89309 3.98445 4.00666 4.08023 4.09110 4.13001 4.19975 4.25662 4.41332 4.45913 4.49689 4.53768 4.56849 4.64488 4.70731 4.75594 4.77220 4.77562 4.81662 4.83916 4.89263 4.89444 4.98952 5.05499 5.12597 5.25891 5.29737 5.43763 5.55702 5.57119 5.58826 5.62093 5.62188 5.79274 5.87214 6.05202 6.21272 6.39571 6.58377 6.85052 7.49601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.093 2.907 3 C -0.468 4.468 4 C -0.415 4.415 5 C -0.105 4.105 6 C 0.029 3.971 7 N -0.305 5.305 8 N -0.574 5.574 9 C 0.508 3.492 10 O -0.544 6.544 11 C 0.115 3.885 12 N -0.359 5.359 13 C 0.065 3.935 14 C -0.264 4.264 15 C -0.050 4.050 16 O -0.554 6.554 17 Si 0.987 3.013 18 H -0.226 1.226 19 H -0.272 1.272 20 H -0.263 1.263 21 C 0.112 3.888 22 C -0.026 4.026 23 C -0.111 4.111 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.106 4.106 28 N -0.291 5.291 29 C -0.265 4.265 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.399 0.601 43 H 0.144 0.856 44 H 0.178 0.822 45 H 0.215 0.785 46 H 0.105 0.895 47 H 0.385 0.615 48 H 0.116 0.884 49 H 0.142 0.858 50 H 0.147 0.853 51 H 0.148 0.852 52 H 0.131 0.869 53 H 0.076 0.924 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 -6.009 2.712 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.282 2.718 3 C -0.573 4.573 4 C -0.501 4.501 5 C -0.143 4.143 6 C -0.099 4.099 7 N -0.121 5.121 8 N -0.320 5.320 9 C 0.293 3.707 10 O -0.417 6.417 11 C -0.010 4.010 12 N -0.141 5.141 13 C -0.080 4.080 14 C -0.276 4.276 15 C -0.160 4.160 16 O -0.360 6.360 17 Si 0.808 3.192 18 H -0.149 1.149 19 H -0.197 1.197 20 H -0.187 1.187 21 C -0.053 4.053 22 C -0.028 4.028 23 C -0.130 4.130 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.125 4.125 28 N -0.112 5.112 29 C -0.437 4.437 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.240 0.760 43 H 0.161 0.839 44 H 0.195 0.805 45 H 0.231 0.769 46 H 0.123 0.877 47 H 0.234 0.766 48 H 0.134 0.866 49 H 0.160 0.840 50 H 0.165 0.835 51 H 0.165 0.835 52 H 0.149 0.851 53 H 0.094 0.906 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.763 -4.786 1.705 8.459 hybrid contribution -0.208 -1.122 0.447 1.225 sum -6.971 -5.908 2.152 9.388 Atomic orbital electron populations 1.26122 1.19690 1.05277 1.04974 0.78277 0.65314 0.64476 0.63749 1.26396 1.05718 1.21209 1.03973 1.26466 0.99740 1.08944 1.14926 1.21195 0.97421 1.00235 0.95476 1.22552 1.02238 0.95308 0.89785 1.62908 1.15194 1.39448 0.94582 1.45355 1.28802 1.29240 1.28642 1.21059 0.80008 0.85562 0.84061 1.90802 1.64904 1.23368 1.62641 1.21911 0.85269 0.94324 0.99476 1.48100 1.18151 1.42137 1.05732 1.22823 0.97917 0.97469 0.89765 1.20681 0.99402 1.11502 0.95983 1.24570 0.95657 0.96549 0.99240 1.86500 1.33315 1.29172 1.87025 0.85255 0.76200 0.82131 0.75616 1.14875 1.19727 1.18686 1.20832 0.94334 0.97838 0.92322 1.17969 0.91770 0.94620 0.98436 1.21257 0.94957 1.00020 0.96802 1.21359 0.96646 0.96053 1.00406 1.21574 1.00341 0.94762 0.97043 1.21400 0.94057 1.01042 0.97644 1.21313 0.97721 0.93774 0.99712 1.77728 0.98253 1.17880 1.17358 1.28154 0.89780 1.08088 1.17679 0.90970 0.90595 0.90156 0.92980 0.91097 0.91934 0.89208 0.90050 0.90575 0.92604 0.91371 0.91609 0.75993 0.83858 0.80497 0.76878 0.87748 0.76637 0.86618 0.84041 0.83547 0.83465 0.85109 0.90560 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.58 8.65 113.37 0.98 3.56 16 2 Si 1.09 -5.12 11.99 68.60 0.82 -4.30 16 3 C -0.47 -1.06 8.65 113.37 0.98 -0.08 16 4 C -0.42 1.51 5.04 72.30 0.36 1.87 16 5 C -0.10 -0.03 5.74 30.78 0.18 0.15 16 6 C 0.03 -0.02 5.38 86.28 0.46 0.44 16 7 N -0.30 -0.45 4.15 -334.14 -1.39 -1.84 16 8 N -0.57 0.96 4.71 -173.53 -0.82 0.14 16 9 C 0.51 2.01 7.96 87.66 0.70 2.71 16 10 O -0.54 -9.29 16.02 -3.04 -0.05 -9.34 16 11 C 0.12 -0.54 6.99 85.63 0.60 0.06 16 12 N -0.36 -1.62 3.40 -351.91 -1.20 -2.82 16 13 C 0.07 0.06 9.96 83.47 0.83 0.89 16 14 C -0.26 -1.51 5.35 -19.95 -0.11 -1.61 16 15 C -0.05 -0.13 2.52 71.24 0.18 0.05 16 16 O -0.55 -2.06 12.88 -148.98 -1.92 -3.98 16 17 Si 0.99 -1.79 26.07 68.60 1.79 0.00 16 18 H -0.23 1.38 7.02 99.48 0.70 2.08 16 19 H -0.27 -0.53 7.11 99.48 0.71 0.18 16 20 H -0.26 -0.04 7.11 99.48 0.71 0.66 16 21 C 0.11 1.36 6.67 42.53 0.28 1.64 16 22 C -0.03 -0.32 5.74 -20.04 -0.12 -0.43 16 23 C -0.11 -1.23 9.78 22.48 0.22 -1.01 16 24 C -0.13 -0.89 10.03 22.24 0.22 -0.67 16 25 C -0.12 -0.61 10.04 22.31 0.22 -0.39 16 26 C -0.12 -0.73 10.03 22.24 0.22 -0.50 16 27 C -0.11 -0.97 8.88 22.48 0.20 -0.77 16 28 N -0.29 -3.94 11.66 -48.15 -0.56 -4.51 16 29 C -0.26 0.86 4.86 127.53 0.62 1.48 16 30 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 32 H 0.08 -0.58 7.96 -2.39 -0.02 -0.60 16 33 H 0.05 0.39 7.96 -2.39 -0.02 0.37 16 34 H 0.07 0.07 7.96 -2.38 -0.02 0.05 16 35 H 0.06 0.17 7.96 -2.38 -0.02 0.15 16 36 H 0.09 -0.56 7.99 -2.39 -0.02 -0.58 16 37 H 0.08 -0.28 7.99 -2.39 -0.02 -0.30 16 38 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 39 H 0.06 0.27 7.96 -2.39 -0.02 0.25 16 40 H 0.07 0.08 8.03 -2.39 -0.02 0.06 16 41 H 0.07 -0.35 7.78 -2.39 -0.02 -0.36 16 42 H 0.40 -3.95 8.83 -215.50 -1.90 -5.86 16 43 H 0.14 -1.39 8.14 -2.39 -0.02 -1.41 16 44 H 0.18 -2.72 8.07 -2.38 -0.02 -2.74 16 45 H 0.21 -1.80 6.35 -2.91 -0.02 -1.82 16 46 H 0.10 0.36 5.55 -2.39 -0.01 0.34 16 47 H 0.39 -1.41 8.70 -74.06 -0.64 -2.06 16 48 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 49 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 50 H 0.15 -0.03 8.06 -2.91 -0.02 -0.06 16 51 H 0.15 0.09 8.06 -2.91 -0.02 0.07 16 52 H 0.13 0.84 6.22 -2.91 -0.02 0.82 16 53 H 0.08 -0.58 7.92 -2.39 -0.02 -0.60 16 54 H 0.08 -0.13 7.99 -2.38 -0.02 -0.15 16 Total: 0.00 -32.94 440.08 2.84 -30.09 By element: Atomic # 1 Polarization: -9.97 SS G_CDS: -0.88 Total: -10.86 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 7.04 Total: 7.40 kcal Atomic # 7 Polarization: -5.06 SS G_CDS: -3.96 Total: -9.02 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.97 Total: -13.31 kcal Atomic # 14 Polarization: -6.92 SS G_CDS: 2.61 Total: -4.30 kcal Total: -32.94 2.84 -30.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12622748.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.415 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds