Wall clock time and date at job start Sun Mar 7 2021 09:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86294 * 109.98450 * 2 1 4 4 C 1.87520 * 110.00499 * 121.31640 * 2 1 3 5 5 C 1.53924 * 106.85057 * 163.09934 * 4 2 1 6 6 C 1.52626 * 109.31181 * 302.79258 * 5 4 2 7 7 N 1.46357 * 111.88933 * 76.52450 * 6 5 4 8 8 N 1.36605 * 111.00047 * 156.80579 * 7 6 5 9 9 C 1.34773 * 119.99827 * 235.45265 * 8 7 6 10 10 O 1.21626 * 119.99930 * 354.97814 * 9 8 7 11 11 C 1.47297 * 119.99824 * 174.97113 * 9 8 7 12 12 C 1.39871 * 120.04534 * 0.02763 * 11 9 8 13 13 C 1.36430 * 120.18380 * 179.71808 * 12 11 9 14 14 C 1.39914 * 120.27821 * 0.51227 * 13 12 11 15 15 C 1.47566 * 119.95618 * 179.76316 * 14 13 12 16 16 C 1.36108 * 125.94494 * 359.72168 * 15 14 13 17 17 C 1.40800 * 106.73200 * 180.29750 * 16 15 14 18 18 C 1.34833 * 107.05200 * 359.57397 * 17 16 15 19 19 C 1.50696 * 125.65547 * 180.15155 * 18 17 16 20 20 O 1.42903 * 109.46877 * 300.30134 * 19 18 17 21 21 Si 1.86298 * 109.47549 * 180.30257 * 19 18 17 22 22 H 1.48497 * 109.46998 * 59.99616 * 21 19 18 23 23 H 1.48490 * 109.47471 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46632 * 300.00324 * 21 19 18 25 25 O 1.34238 * 108.69112 * 0.43401 * 18 17 16 26 26 C 1.39609 * 120.08955 * 359.48345 * 14 13 12 27 27 C 1.38279 * 119.81465 * 0.25964 * 26 14 13 28 28 O 1.35669 * 120.14174 * 179.97438 * 27 26 14 29 29 C 1.47721 * 111.30461 * 280.97888 * 7 6 5 30 30 H 1.08995 * 109.46843 * 298.68471 * 1 2 3 31 31 H 1.08999 * 109.47525 * 58.68619 * 1 2 3 32 32 H 1.08999 * 109.47009 * 178.68723 * 1 2 3 33 33 H 1.09004 * 109.47365 * 181.31535 * 3 2 1 34 34 H 1.09002 * 109.47535 * 301.31294 * 3 2 1 35 35 H 1.08994 * 109.47447 * 61.31342 * 3 2 1 36 36 H 1.09003 * 109.97689 * 43.76031 * 4 2 1 37 37 H 1.08998 * 110.04897 * 282.47424 * 4 2 1 38 38 H 1.09001 * 109.49608 * 182.84855 * 5 4 2 39 39 H 1.08995 * 109.49807 * 62.74510 * 5 4 2 40 40 H 1.08997 * 108.99828 * 315.90150 * 6 5 4 41 41 H 1.09001 * 108.93192 * 197.10222 * 6 5 4 42 42 H 0.96996 * 119.99983 * 55.45540 * 8 7 6 43 43 H 1.08001 * 119.90706 * 359.97438 * 12 11 9 44 44 H 1.08005 * 119.85697 * 180.25849 * 13 12 11 45 45 H 1.07996 * 126.63058 * 0.03976 * 16 15 14 46 46 H 1.07997 * 126.47178 * 179.73583 * 17 16 15 47 47 H 1.09004 * 109.47083 * 60.29996 * 19 18 17 48 48 H 0.96695 * 113.99984 * 299.99290 * 20 19 18 49 49 H 1.08001 * 120.09604 * 180.23156 * 26 14 13 50 50 H 0.96702 * 114.00139 * 89.99311 * 28 27 26 51 51 H 1.09003 * 109.95092 * 179.68035 * 29 7 6 52 52 H 1.09003 * 109.95036 * 300.93616 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5045 -0.9159 1.5053 5 6 3.9816 -1.2490 1.2290 6 6 4.0831 -2.0636 -0.0577 7 7 3.9262 -1.2261 -1.2476 8 7 4.5043 -1.8115 -2.3381 9 6 5.4352 -1.1433 -3.0475 10 8 5.6947 0.0128 -2.7732 11 6 6.1383 -1.8132 -4.1550 12 6 5.8402 -3.1426 -4.4715 13 6 6.4856 -3.7640 -5.5004 14 6 7.4573 -3.0803 -6.2392 15 6 8.1548 -3.7610 -7.3473 16 6 7.9530 -5.0456 -7.7491 17 6 8.8299 -5.2759 -8.8264 18 6 9.5103 -4.1305 -9.0341 19 6 10.5595 -3.9118 -10.0935 20 8 11.6314 -4.8370 -9.9004 21 14 11.2120 -2.1712 -9.9715 22 1 11.8121 -1.9604 -8.6296 23 1 12.2454 -1.9555 -11.0158 24 1 10.0981 -1.2098 -10.1720 25 8 9.1027 -3.2192 -8.1367 26 6 7.7639 -1.7531 -5.9333 27 6 7.1083 -1.1179 -4.8947 28 8 7.4013 0.1716 -4.5913 29 6 2.5043 -0.9182 -1.5036 30 1 -0.3633 0.4933 0.9015 31 1 -0.3634 0.5341 -0.8779 32 1 -0.3633 -1.0274 -0.0235 33 1 3.5894 1.7411 -0.0236 34 1 2.1220 2.2748 -0.8780 35 1 2.1603 2.2608 0.9015 36 1 1.9367 -1.8346 1.6523 37 1 2.4245 -0.2836 2.3896 38 1 4.3853 -1.8286 2.0592 39 1 4.5488 -0.3247 1.1200 40 1 3.3055 -2.8275 -0.0563 41 1 5.0579 -2.5502 -0.0922 42 1 4.2448 -2.7082 -2.6018 43 1 5.0941 -3.6773 -3.9025 44 1 6.2483 -4.7894 -5.7430 45 1 7.2580 -5.7530 -7.3214 46 1 8.9356 -6.1954 -9.3829 47 1 10.1190 -4.0665 -11.0785 48 1 12.0708 -4.7564 -9.0429 49 1 8.5113 -1.2240 -6.5060 50 1 6.8620 0.8195 -5.0651 51 1 2.4135 -0.2899 -2.3896 52 1 1.9429 -1.8422 -1.6425 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_12807986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:40 Heat of formation + Delta-G solvation = -64.296494 kcal Electronic energy + Delta-G solvation = -33501.021686 eV Core-core repulsion = 28978.365711 eV Total energy + Delta-G solvation = -4522.655974 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 390.162 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.76391 -41.54119 -40.11777 -38.28955 -38.04229 -37.76871 -34.94704 -34.26679 -33.57995 -31.68220 -31.20760 -30.26218 -29.41685 -28.40646 -27.63686 -27.10154 -25.20035 -24.16346 -23.96810 -22.46829 -21.95161 -21.83984 -21.29523 -19.79685 -18.96834 -18.54348 -18.16361 -17.71801 -17.53578 -16.80993 -16.69722 -16.64679 -16.09313 -15.85844 -15.70839 -15.21623 -15.18340 -14.91919 -14.81269 -14.74277 -14.43974 -14.28385 -14.09657 -14.04325 -13.89455 -13.84606 -13.61989 -13.58576 -13.51872 -13.26880 -13.14870 -13.01945 -12.91742 -12.76566 -12.23186 -12.10572 -12.06083 -12.04821 -11.81623 -11.26820 -11.14407 -10.86974 -10.79027 -10.62218 -10.56341 -10.39059 -10.08631 -9.98208 -9.72133 -9.03035 -0.79209 0.08890 0.64344 0.97402 1.33715 1.36785 1.39005 1.47142 1.69049 1.72857 1.80512 1.87486 2.01548 2.08312 2.53241 2.66533 3.00206 3.19014 3.31529 3.34878 3.52640 3.64667 3.84169 3.88009 3.91953 3.92930 4.07481 4.16254 4.30021 4.35416 4.36823 4.46669 4.54703 4.58693 4.63771 4.65159 4.65547 4.69441 4.75455 4.80307 4.81613 4.88011 4.93725 4.97466 5.00817 5.06135 5.14571 5.22264 5.35456 5.36742 5.41265 5.43925 5.69439 5.76603 5.93350 6.31554 6.31864 6.45331 6.69163 7.59367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.031 2.969 3 C -0.443 4.443 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.274 5.274 8 N -0.585 5.585 9 C 0.573 3.427 10 O -0.491 6.491 11 C -0.160 4.160 12 C -0.066 4.066 13 C -0.116 4.116 14 C 0.030 3.970 15 C 0.023 3.977 16 C -0.177 4.177 17 C -0.171 4.171 18 C -0.047 4.047 19 C -0.040 4.040 20 O -0.528 6.528 21 Si 0.952 3.048 22 H -0.247 1.247 23 H -0.244 1.244 24 H -0.246 1.246 25 O -0.166 6.166 26 C -0.141 4.141 27 C 0.180 3.820 28 O -0.473 6.473 29 C -0.260 4.260 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.375 0.625 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.137 0.863 48 H 0.382 0.618 49 H 0.143 0.857 50 H 0.399 0.601 51 H 0.090 0.910 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 -3.867 -0.577 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.224 2.776 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.090 5.090 8 N -0.331 5.331 9 C 0.360 3.640 10 O -0.363 6.363 11 C -0.165 4.165 12 C -0.084 4.084 13 C -0.134 4.134 14 C 0.029 3.971 15 C -0.027 4.027 16 C -0.196 4.196 17 C -0.190 4.190 18 C -0.097 4.097 19 C -0.151 4.151 20 O -0.334 6.334 21 Si 0.772 3.228 22 H -0.170 1.170 23 H -0.167 1.167 24 H -0.169 1.169 25 O -0.064 6.064 26 C -0.159 4.159 27 C 0.133 3.867 28 O -0.285 6.285 29 C -0.433 4.433 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.215 0.785 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.174 0.826 46 H 0.175 0.825 47 H 0.155 0.845 48 H 0.230 0.770 49 H 0.161 0.839 50 H 0.258 0.742 51 H 0.109 0.891 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.339 -1.888 -0.478 3.044 hybrid contribution -1.145 -1.765 -0.105 2.107 sum -3.484 -3.653 -0.582 5.082 Atomic orbital electron populations 1.26119 1.20373 1.04514 1.04825 0.79213 0.65810 0.67752 0.64819 1.26024 1.07371 1.17692 1.04066 1.26383 1.00710 1.08095 1.14436 1.21186 0.96629 1.01147 0.94945 1.22568 1.02230 0.95230 0.90180 1.62957 1.13804 1.38344 0.93887 1.45502 1.41964 1.17789 1.27857 1.17743 0.78675 0.86242 0.81330 1.90828 1.62797 1.15770 1.66931 1.20474 1.00236 0.95773 1.00025 1.20816 0.98456 0.92912 0.96250 1.20692 0.96201 1.00717 0.95748 1.17748 0.94764 0.92586 0.92004 1.20318 0.94255 0.92835 0.95295 1.21915 1.02909 0.95542 0.99228 1.21569 0.98018 0.99353 1.00081 1.23057 1.02314 0.89074 0.95299 1.24362 0.86844 1.07031 0.96835 1.86572 1.46246 1.59395 1.41149 0.85593 0.81473 0.73620 0.82153 1.17043 1.16675 1.16900 1.83943 1.45324 1.40055 1.37051 1.21583 1.01940 0.94695 0.97727 1.18246 0.91155 0.86241 0.91025 1.84780 1.62404 1.12248 1.69045 1.28080 0.90981 1.06903 1.17359 0.90707 0.91066 0.91256 0.90286 0.91384 0.91393 0.90709 0.90069 0.90790 0.90201 0.93637 0.90074 0.78539 0.84786 0.84354 0.82599 0.82505 0.84515 0.77044 0.83943 0.74195 0.89130 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.85 8.65 101.05 0.87 1.72 16 2 Si 1.03 -2.14 11.99 -169.99 -2.04 -4.18 16 3 C -0.44 -0.04 8.65 101.05 0.87 0.84 16 4 C -0.41 0.71 5.03 37.64 0.19 0.90 16 5 C -0.10 0.07 5.74 -26.44 -0.15 -0.09 16 6 C 0.03 -0.01 5.38 -4.31 -0.02 -0.03 16 7 N -0.27 -0.31 4.15 -56.97 -0.24 -0.54 16 8 N -0.59 -0.49 4.65 30.40 0.14 -0.35 16 9 C 0.57 1.90 7.86 -12.58 -0.10 1.80 16 10 O -0.49 -3.48 15.47 -16.70 -0.26 -3.74 16 11 C -0.16 -0.24 5.89 -104.79 -0.62 -0.86 16 12 C -0.07 0.08 9.47 -39.62 -0.38 -0.29 16 13 C -0.12 0.14 9.48 -39.61 -0.38 -0.23 16 14 C 0.03 0.02 5.87 -104.95 -0.62 -0.60 16 15 C 0.02 0.03 7.02 -36.54 -0.26 -0.23 16 16 C -0.18 -0.01 10.26 -39.38 -0.40 -0.42 16 17 C -0.17 -0.05 10.76 -39.82 -0.43 -0.48 16 18 C -0.05 -0.03 6.22 -35.52 -0.22 -0.25 16 19 C -0.04 0.04 2.98 36.00 0.11 0.15 16 20 O -0.53 0.34 12.87 -35.23 -0.45 -0.11 16 21 Si 0.95 -0.53 27.38 -169.99 -4.65 -5.18 16 22 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 23 H -0.24 -0.04 7.11 56.52 0.40 0.37 16 24 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 25 O -0.17 -0.31 8.78 4.71 0.04 -0.27 16 26 C -0.14 -0.20 9.65 -39.06 -0.38 -0.57 16 27 C 0.18 0.40 6.71 -38.75 -0.26 0.14 16 28 O -0.47 -1.42 11.56 -40.66 -0.47 -1.89 16 29 C -0.26 0.13 4.86 60.52 0.29 0.43 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.08 0.14 7.96 -51.93 -0.41 -0.28 16 34 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 35 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 36 H 0.07 -0.17 7.99 -51.93 -0.42 -0.58 16 37 H 0.08 -0.15 7.99 -51.93 -0.42 -0.57 16 38 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 39 H 0.08 0.04 7.96 -51.93 -0.41 -0.38 16 40 H 0.05 -0.08 7.78 -51.93 -0.40 -0.48 16 41 H 0.08 -0.01 8.03 -51.93 -0.42 -0.43 16 42 H 0.38 -0.76 6.85 -185.16 -1.27 -2.03 16 43 H 0.13 -0.56 6.39 -52.49 -0.34 -0.90 16 44 H 0.14 -0.50 6.95 -52.48 -0.36 -0.86 16 45 H 0.16 -0.37 7.24 -52.49 -0.38 -0.75 16 46 H 0.16 -0.16 8.06 -52.49 -0.42 -0.58 16 47 H 0.14 -0.36 7.96 -51.93 -0.41 -0.77 16 48 H 0.38 -1.38 8.70 45.56 0.40 -0.98 16 49 H 0.14 0.13 7.90 -52.49 -0.41 -0.28 16 50 H 0.40 -0.32 9.06 45.56 0.41 0.09 16 51 H 0.09 0.04 7.99 -51.93 -0.41 -0.38 16 52 H 0.05 -0.09 7.92 -51.93 -0.41 -0.50 16 LS Contribution 429.35 15.07 6.47 6.47 Total: 0.00 -9.93 429.35 -10.70 -20.63 By element: Atomic # 1 Polarization: -5.38 SS G_CDS: -7.38 Total: -12.76 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.87 Total: 1.93 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -0.09 Total: -0.89 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -1.14 Total: -6.01 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: -6.69 Total: -9.36 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -9.93 -10.70 -20.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12807986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.665 kcal (2) G-P(sol) polarization free energy of solvation -9.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds