Wall clock time and date at job start Sun Mar 7 2021 09:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86294 * 109.98450 * 2 1 4 4 C 1.87520 * 110.00499 * 121.31640 * 2 1 3 5 5 C 1.53924 * 106.85057 * 163.09934 * 4 2 1 6 6 C 1.52626 * 109.31181 * 302.79258 * 5 4 2 7 7 N 1.46357 * 111.88933 * 76.52450 * 6 5 4 8 8 N 1.36605 * 111.00047 * 156.80579 * 7 6 5 9 9 C 1.34773 * 119.99827 * 235.45265 * 8 7 6 10 10 O 1.21626 * 119.99930 * 354.97814 * 9 8 7 11 11 C 1.47297 * 119.99824 * 174.97113 * 9 8 7 12 12 C 1.39871 * 120.04534 * 0.02763 * 11 9 8 13 13 C 1.36430 * 120.18380 * 179.71808 * 12 11 9 14 14 C 1.39914 * 120.27821 * 0.51227 * 13 12 11 15 15 C 1.47566 * 119.95618 * 179.76316 * 14 13 12 16 16 C 1.36108 * 125.94494 * 359.72168 * 15 14 13 17 17 C 1.40800 * 106.73200 * 180.29750 * 16 15 14 18 18 C 1.34833 * 107.05200 * 359.57397 * 17 16 15 19 19 C 1.50696 * 125.65547 * 180.15155 * 18 17 16 20 20 O 1.42903 * 109.46877 * 300.30134 * 19 18 17 21 21 Si 1.86298 * 109.47549 * 180.30257 * 19 18 17 22 22 H 1.48497 * 109.46998 * 59.99616 * 21 19 18 23 23 H 1.48490 * 109.47471 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46632 * 300.00324 * 21 19 18 25 25 O 1.34238 * 108.69112 * 0.43401 * 18 17 16 26 26 C 1.39609 * 120.08955 * 359.48345 * 14 13 12 27 27 C 1.38279 * 119.81465 * 0.25964 * 26 14 13 28 28 O 1.35669 * 120.14174 * 179.97438 * 27 26 14 29 29 C 1.47721 * 111.30461 * 280.97888 * 7 6 5 30 30 H 1.08995 * 109.46843 * 298.68471 * 1 2 3 31 31 H 1.08999 * 109.47525 * 58.68619 * 1 2 3 32 32 H 1.08999 * 109.47009 * 178.68723 * 1 2 3 33 33 H 1.09004 * 109.47365 * 181.31535 * 3 2 1 34 34 H 1.09002 * 109.47535 * 301.31294 * 3 2 1 35 35 H 1.08994 * 109.47447 * 61.31342 * 3 2 1 36 36 H 1.09003 * 109.97689 * 43.76031 * 4 2 1 37 37 H 1.08998 * 110.04897 * 282.47424 * 4 2 1 38 38 H 1.09001 * 109.49608 * 182.84855 * 5 4 2 39 39 H 1.08995 * 109.49807 * 62.74510 * 5 4 2 40 40 H 1.08997 * 108.99828 * 315.90150 * 6 5 4 41 41 H 1.09001 * 108.93192 * 197.10222 * 6 5 4 42 42 H 0.96996 * 119.99983 * 55.45540 * 8 7 6 43 43 H 1.08001 * 119.90706 * 359.97438 * 12 11 9 44 44 H 1.08005 * 119.85697 * 180.25849 * 13 12 11 45 45 H 1.07996 * 126.63058 * 0.03976 * 16 15 14 46 46 H 1.07997 * 126.47178 * 179.73583 * 17 16 15 47 47 H 1.09004 * 109.47083 * 60.29996 * 19 18 17 48 48 H 0.96695 * 113.99984 * 299.99290 * 20 19 18 49 49 H 1.08001 * 120.09604 * 180.23156 * 26 14 13 50 50 H 0.96702 * 114.00139 * 89.99311 * 28 27 26 51 51 H 1.09003 * 109.95092 * 179.68035 * 29 7 6 52 52 H 1.09003 * 109.95036 * 300.93616 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5045 -0.9159 1.5053 5 6 3.9816 -1.2490 1.2290 6 6 4.0831 -2.0636 -0.0577 7 7 3.9262 -1.2261 -1.2476 8 7 4.5043 -1.8115 -2.3381 9 6 5.4352 -1.1433 -3.0475 10 8 5.6947 0.0128 -2.7732 11 6 6.1383 -1.8132 -4.1550 12 6 5.8402 -3.1426 -4.4715 13 6 6.4856 -3.7640 -5.5004 14 6 7.4573 -3.0803 -6.2392 15 6 8.1548 -3.7610 -7.3473 16 6 7.9530 -5.0456 -7.7491 17 6 8.8299 -5.2759 -8.8264 18 6 9.5103 -4.1305 -9.0341 19 6 10.5595 -3.9118 -10.0935 20 8 11.6314 -4.8370 -9.9004 21 14 11.2120 -2.1712 -9.9715 22 1 11.8121 -1.9604 -8.6296 23 1 12.2454 -1.9555 -11.0158 24 1 10.0981 -1.2098 -10.1720 25 8 9.1027 -3.2192 -8.1367 26 6 7.7639 -1.7531 -5.9333 27 6 7.1083 -1.1179 -4.8947 28 8 7.4013 0.1716 -4.5913 29 6 2.5043 -0.9182 -1.5036 30 1 -0.3633 0.4933 0.9015 31 1 -0.3634 0.5341 -0.8779 32 1 -0.3633 -1.0274 -0.0235 33 1 3.5894 1.7411 -0.0236 34 1 2.1220 2.2748 -0.8780 35 1 2.1603 2.2608 0.9015 36 1 1.9367 -1.8346 1.6523 37 1 2.4245 -0.2836 2.3896 38 1 4.3853 -1.8286 2.0592 39 1 4.5488 -0.3247 1.1200 40 1 3.3055 -2.8275 -0.0563 41 1 5.0579 -2.5502 -0.0922 42 1 4.2448 -2.7082 -2.6018 43 1 5.0941 -3.6773 -3.9025 44 1 6.2483 -4.7894 -5.7430 45 1 7.2580 -5.7530 -7.3214 46 1 8.9356 -6.1954 -9.3829 47 1 10.1190 -4.0665 -11.0785 48 1 12.0708 -4.7564 -9.0429 49 1 8.5113 -1.2240 -6.5060 50 1 6.8620 0.8195 -5.0651 51 1 2.4135 -0.2899 -2.3896 52 1 1.9429 -1.8422 -1.6425 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12807986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:39 Heat of formation + Delta-G solvation = -61.315164 kcal Electronic energy + Delta-G solvation = -33500.892405 eV Core-core repulsion = 28978.365711 eV Total energy + Delta-G solvation = -4522.526694 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 390.162 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.76496 -41.63890 -40.17309 -38.38367 -38.04399 -37.83006 -34.99760 -34.26548 -33.57735 -31.69967 -31.22512 -30.25052 -29.32196 -28.34821 -27.55777 -27.08677 -25.19156 -24.15310 -23.95511 -22.46736 -21.95284 -21.86954 -21.34064 -19.84225 -19.00339 -18.55578 -18.21994 -17.71516 -17.54685 -16.84529 -16.72846 -16.65994 -16.19777 -15.84209 -15.73208 -15.29278 -15.15656 -14.94087 -14.76338 -14.68603 -14.42362 -14.29641 -13.99264 -13.96361 -13.87359 -13.79821 -13.62131 -13.53994 -13.48964 -13.18967 -13.11089 -12.97811 -12.85892 -12.75507 -12.30426 -12.08773 -12.02359 -11.96950 -11.91914 -11.30242 -11.14770 -10.79855 -10.77592 -10.76170 -10.54114 -10.31108 -10.16056 -10.00187 -9.67773 -9.03247 -0.82471 0.09615 0.62632 1.01714 1.34145 1.37922 1.42333 1.46901 1.71568 1.82013 1.86019 1.91455 1.95440 2.15856 2.60921 2.63800 2.97917 3.26945 3.34015 3.42239 3.57783 3.65862 3.87143 3.95690 3.98850 4.02578 4.14492 4.21557 4.34203 4.43689 4.45404 4.54680 4.60734 4.67615 4.69046 4.74842 4.78671 4.80288 4.82156 4.85104 4.85811 4.88364 4.93340 5.01742 5.06486 5.11139 5.17089 5.31304 5.42958 5.48218 5.49261 5.58774 5.66141 5.83645 5.95135 6.20875 6.40730 6.52287 6.65750 7.50572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.092 2.908 3 C -0.466 4.466 4 C -0.412 4.412 5 C -0.104 4.104 6 C 0.026 3.974 7 N -0.301 5.301 8 N -0.574 5.574 9 C 0.570 3.430 10 O -0.543 6.543 11 C -0.175 4.175 12 C -0.051 4.051 13 C -0.108 4.108 14 C 0.026 3.974 15 C 0.000 4.000 16 C -0.169 4.169 17 C -0.178 4.178 18 C -0.057 4.057 19 C -0.030 4.030 20 O -0.537 6.537 21 Si 0.979 3.021 22 H -0.267 1.267 23 H -0.251 1.251 24 H -0.266 1.266 25 O -0.185 6.185 26 C -0.155 4.155 27 C 0.163 3.837 28 O -0.495 6.495 29 C -0.270 4.270 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.392 0.608 43 H 0.169 0.831 44 H 0.172 0.828 45 H 0.184 0.816 46 H 0.171 0.829 47 H 0.156 0.844 48 H 0.393 0.607 49 H 0.135 0.865 50 H 0.408 0.592 51 H 0.075 0.925 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 -7.056 -0.466 8.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.281 2.719 3 C -0.572 4.572 4 C -0.498 4.498 5 C -0.143 4.143 6 C -0.102 4.102 7 N -0.118 5.118 8 N -0.319 5.319 9 C 0.358 3.642 10 O -0.419 6.419 11 C -0.179 4.179 12 C -0.070 4.070 13 C -0.125 4.125 14 C 0.026 3.974 15 C -0.049 4.049 16 C -0.187 4.187 17 C -0.197 4.197 18 C -0.107 4.107 19 C -0.141 4.141 20 O -0.344 6.344 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.175 1.175 24 H -0.190 1.190 25 O -0.083 6.083 26 C -0.173 4.173 27 C 0.116 3.884 28 O -0.308 6.308 29 C -0.442 4.442 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.234 0.766 43 H 0.186 0.814 44 H 0.189 0.811 45 H 0.201 0.799 46 H 0.189 0.811 47 H 0.173 0.827 48 H 0.243 0.757 49 H 0.153 0.847 50 H 0.269 0.731 51 H 0.094 0.906 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.043 -5.090 -0.374 6.511 hybrid contribution -0.569 -0.748 -0.162 0.954 sum -4.612 -5.838 -0.536 7.459 Atomic orbital electron populations 1.26141 1.19970 1.05165 1.04914 0.78295 0.65209 0.64733 0.63674 1.26364 1.05970 1.20908 1.03939 1.26419 0.99922 1.08888 1.14594 1.21212 0.97353 1.00440 0.95269 1.22589 1.02719 0.95416 0.89443 1.62923 1.14845 1.39640 0.94371 1.45342 1.41011 1.18196 1.27356 1.18083 0.78697 0.85808 0.81570 1.90797 1.64573 1.17931 1.68562 1.20471 1.00564 0.97054 0.99860 1.21150 0.98325 0.91525 0.95951 1.21045 0.94847 1.01887 0.94761 1.17961 0.95118 0.92226 0.92129 1.20575 0.94870 0.93614 0.95872 1.22271 1.02675 0.95216 0.98588 1.21837 0.97899 0.99633 1.00318 1.23403 1.02664 0.89236 0.95350 1.24318 0.86500 1.05959 0.97344 1.86545 1.46327 1.59326 1.42216 0.85203 0.80118 0.73942 0.80477 1.19164 1.17466 1.19024 1.83936 1.45887 1.40912 1.37609 1.21546 1.02328 0.95500 0.97971 1.18444 0.92097 0.85999 0.91818 1.84731 1.63147 1.13243 1.69706 1.28262 0.90332 1.07868 1.17700 0.90439 0.91242 0.90276 0.92581 0.92095 0.90977 0.89211 0.89778 0.90062 0.92119 0.91495 0.90590 0.76601 0.81358 0.81094 0.79913 0.81116 0.82709 0.75735 0.84730 0.73142 0.90576 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.28 8.65 113.37 0.98 3.26 16 2 Si 1.09 -4.71 11.99 68.60 0.82 -3.89 16 3 C -0.47 -0.98 8.65 113.37 0.98 0.00 16 4 C -0.41 1.83 5.03 72.29 0.36 2.20 16 5 C -0.10 0.13 5.74 30.78 0.18 0.31 16 6 C 0.03 -0.04 5.38 86.28 0.46 0.43 16 7 N -0.30 -0.79 4.15 -334.14 -1.39 -2.17 16 8 N -0.57 -1.02 4.65 -175.97 -0.82 -1.84 16 9 C 0.57 4.66 7.86 86.63 0.68 5.34 16 10 O -0.54 -9.38 15.47 16.88 0.26 -9.12 16 11 C -0.17 -0.69 5.89 -19.97 -0.12 -0.80 16 12 C -0.05 0.20 9.47 22.24 0.21 0.41 16 13 C -0.11 0.45 9.48 22.25 0.21 0.66 16 14 C 0.03 0.04 5.87 -20.08 -0.12 -0.08 16 15 C 0.00 0.00 7.02 24.24 0.17 0.17 16 16 C -0.17 0.25 10.26 22.40 0.23 0.48 16 17 C -0.18 0.11 10.76 22.11 0.24 0.35 16 18 C -0.06 -0.06 6.22 24.90 0.15 0.09 16 19 C -0.03 0.07 2.98 71.23 0.21 0.28 16 20 O -0.54 0.99 12.87 -148.98 -1.92 -0.93 16 21 Si 0.98 0.11 27.38 68.60 1.88 1.99 16 22 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 23 H -0.25 -0.28 7.11 99.48 0.71 0.43 16 24 H -0.27 -0.85 7.11 99.48 0.71 -0.14 16 25 O -0.19 -0.85 8.78 -6.07 -0.05 -0.91 16 26 C -0.15 -0.75 9.65 22.61 0.22 -0.53 16 27 C 0.16 1.10 6.71 22.81 0.15 1.26 16 28 O -0.50 -4.72 11.56 -68.86 -0.80 -5.52 16 29 C -0.27 0.33 4.86 127.53 0.62 0.95 16 30 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 33 H 0.05 0.37 7.96 -2.39 -0.02 0.35 16 34 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 35 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 36 H 0.09 -0.62 7.99 -2.39 -0.02 -0.64 16 37 H 0.08 -0.39 7.99 -2.39 -0.02 -0.41 16 38 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.06 0.15 7.96 -2.39 -0.02 0.14 16 40 H 0.07 -0.39 7.78 -2.39 -0.02 -0.40 16 41 H 0.08 -0.04 8.03 -2.39 -0.02 -0.06 16 42 H 0.39 -2.15 6.85 -215.50 -1.48 -3.63 16 43 H 0.17 -1.93 6.39 -2.91 -0.02 -1.95 16 44 H 0.17 -1.87 6.95 -2.91 -0.02 -1.89 16 45 H 0.18 -1.45 7.24 -2.91 -0.02 -1.47 16 46 H 0.17 -0.66 8.06 -2.91 -0.02 -0.69 16 47 H 0.16 -0.94 7.96 -2.39 -0.02 -0.96 16 48 H 0.39 -2.90 8.70 -74.06 -0.64 -3.55 16 49 H 0.13 0.70 7.90 -2.91 -0.02 0.68 16 50 H 0.41 0.98 9.06 -74.06 -0.67 0.31 16 51 H 0.08 0.14 7.99 -2.39 -0.02 0.12 16 52 H 0.07 -0.38 7.92 -2.39 -0.02 -0.40 16 Total: 0.00 -25.97 429.35 2.76 -23.21 By element: Atomic # 1 Polarization: -14.55 SS G_CDS: -1.06 Total: -15.61 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.83 Total: 14.77 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.01 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -2.50 Total: -16.47 kcal Atomic # 14 Polarization: -4.60 SS G_CDS: 2.70 Total: -1.90 kcal Total: -25.97 2.76 -23.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12807986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.107 kcal (2) G-P(sol) polarization free energy of solvation -25.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds