Wall clock time and date at job start Sun Mar 7 2021 09:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39283 * 121.03408 * 2 1 4 4 C 1.46490 * 134.20202 * 359.90067 * 3 2 1 5 5 C 1.50707 * 126.59548 * 0.37538 * 4 3 2 6 6 O 1.42900 * 109.47219 * 285.00398 * 5 4 3 7 7 Si 1.86309 * 109.46774 * 165.00336 * 5 4 3 8 8 H 1.48501 * 109.47109 * 299.99875 * 7 5 4 9 9 H 1.48493 * 109.47100 * 60.00487 * 7 5 4 10 10 H 1.48502 * 109.46657 * 180.02562 * 7 5 4 11 11 C 1.34180 * 106.80512 * 180.35961 * 4 3 2 12 12 N 1.36939 * 109.95253 * 359.97438 * 11 4 3 13 13 C 1.37156 * 110.11469 * 0.02562 * 12 11 4 14 14 N 1.32826 * 132.96888 * 179.97438 * 13 12 11 15 15 C 1.31308 * 121.89060 * 179.97438 * 14 13 12 16 16 C 1.39754 * 121.02922 * 179.73081 * 2 1 3 17 17 C 1.47663 * 120.45356 * 0.02562 * 16 2 1 18 18 O 1.21576 * 120.00143 * 3.52578 * 17 16 2 19 19 N 1.34777 * 120.00004 * 183.25796 * 17 16 2 20 20 N 1.36606 * 120.00036 * 175.29258 * 19 17 16 21 21 C 1.46358 * 110.99812 * 235.31781 * 20 19 17 22 22 C 1.52628 * 111.88765 * 156.80608 * 21 20 19 23 23 C 1.53930 * 109.31248 * 76.52155 * 22 21 20 24 24 Si 1.87527 * 106.84813 * 302.79445 * 23 22 21 25 25 C 1.86300 * 109.99930 * 163.10028 * 24 23 22 26 26 C 1.86292 * 110.00080 * 284.40239 * 24 23 22 27 27 C 1.47721 * 110.99665 * 110.96716 * 20 19 17 28 28 H 1.09001 * 109.47818 * 263.77189 * 1 2 3 29 29 H 1.09006 * 109.46807 * 23.77156 * 1 2 3 30 30 H 1.08999 * 109.47527 * 143.76210 * 1 2 3 31 31 H 1.09001 * 109.47170 * 45.01025 * 5 4 3 32 32 H 0.96701 * 113.99538 * 180.02562 * 6 5 4 33 33 H 1.08006 * 125.02266 * 179.97438 * 11 4 3 34 34 H 0.97000 * 124.94497 * 180.02562 * 12 11 4 35 35 H 1.07993 * 119.31061 * 180.02562 * 15 14 13 36 36 H 0.96999 * 119.99882 * 355.28866 * 19 17 16 37 37 H 1.09001 * 108.99683 * 277.42578 * 21 20 19 38 38 H 1.09003 * 108.99620 * 36.26596 * 21 20 19 39 39 H 1.09002 * 109.49272 * 196.47607 * 22 21 20 40 40 H 1.08999 * 109.49578 * 316.57016 * 22 21 20 41 41 H 1.08994 * 109.97363 * 62.12828 * 23 22 21 42 42 H 1.08990 * 109.97447 * 183.36888 * 23 22 21 43 43 H 1.08997 * 109.47549 * 60.00114 * 25 24 23 44 44 H 1.09005 * 109.46669 * 180.02562 * 25 24 23 45 45 H 1.09005 * 109.47111 * 299.99581 * 25 24 23 46 46 H 1.09000 * 109.47284 * 60.00276 * 26 24 23 47 47 H 1.09009 * 109.47234 * 180.02562 * 26 24 23 48 48 H 1.09003 * 109.47524 * 299.99634 * 26 24 23 49 49 H 1.08995 * 109.95388 * 303.85583 * 27 20 19 50 50 H 1.09003 * 109.94710 * 65.11749 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8517 2.6100 -0.0018 5 6 0.4527 3.1705 0.0035 6 8 -0.1255 3.0205 -1.2946 7 14 0.5095 4.9776 0.4532 8 1 1.1104 5.1334 1.8022 9 1 1.3322 5.7098 -0.5428 10 1 -0.8691 5.5297 0.4590 11 6 2.9949 3.3125 -0.0088 12 7 4.0669 2.4604 -0.0110 13 6 3.6348 1.1587 -0.0060 14 7 4.2720 -0.0068 -0.0061 15 6 3.6266 -1.1503 0.0001 16 6 2.2273 -1.1975 0.0056 17 6 1.5224 -2.4950 0.0112 18 8 0.3088 -2.5277 -0.0539 19 7 2.2245 -3.6432 0.0829 20 7 1.5709 -4.8383 0.1850 21 6 2.0247 -5.5857 1.3587 22 6 0.9826 -6.5979 1.8266 23 6 1.0003 -7.8177 0.8879 24 14 0.6789 -7.1753 -0.8443 25 6 1.1771 -8.4564 -2.1017 26 6 -1.1251 -6.7553 -1.0436 27 6 1.7253 -5.6334 -1.0504 28 1 -0.3635 -0.1115 1.0216 29 1 -0.3633 0.9405 -0.4143 30 1 -0.3634 -0.8289 -0.6075 31 1 -0.1512 2.6330 0.7346 32 1 -1.0279 3.3608 -1.3649 33 1 3.0600 4.3905 -0.0122 34 1 4.9966 2.7371 -0.0155 35 1 4.1868 -2.0735 0.0001 36 1 3.1940 -3.6209 0.0619 37 1 2.9451 -6.1136 1.1092 38 1 2.2263 -4.8852 2.1692 39 1 1.2159 -6.9170 2.8424 40 1 -0.0055 -6.1382 1.8071 41 1 1.9742 -8.3054 0.9295 42 1 0.2194 -8.5211 1.1766 43 1 0.5975 -9.3658 -1.9433 44 1 0.9872 -8.0742 -3.1047 45 1 2.2388 -8.6787 -1.9930 46 1 -1.4019 -5.9888 -0.3198 47 1 -1.3023 -6.3835 -2.0528 48 1 -1.7269 -7.6484 -0.8751 49 1 1.3762 -5.0591 -1.9084 50 1 2.7710 -5.9092 -1.1868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_12890568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:02 Heat of formation + Delta-G solvation = 8.370178 kcal Electronic energy + Delta-G solvation = -30837.162837 eV Core-core repulsion = 26796.859010 eV Total energy + Delta-G solvation = -4040.303827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 362.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.86964 -41.11690 -39.17702 -38.28901 -37.67119 -35.21666 -34.78367 -32.42424 -31.97124 -30.39388 -29.29834 -28.83985 -28.31975 -27.50520 -26.47978 -25.25334 -24.37977 -23.66629 -21.84891 -21.83236 -20.38340 -19.29459 -18.99463 -18.39659 -18.19401 -17.46805 -16.82416 -16.81186 -16.30038 -15.93775 -15.55938 -15.37017 -15.14359 -14.94606 -14.83164 -14.74079 -14.43196 -14.35861 -13.99947 -13.94381 -13.77155 -13.76501 -13.60914 -13.45980 -13.30117 -13.16385 -13.07866 -12.98213 -12.94371 -12.56751 -12.10610 -11.98897 -11.91964 -11.83607 -11.24879 -11.12181 -10.92466 -10.76662 -10.46528 -10.24963 -10.15577 -10.12858 -9.68389 -9.63673 -9.14643 -0.35371 -0.11138 1.21651 1.35105 1.44819 1.51613 1.62731 1.65371 1.80784 1.89818 1.95431 1.96936 2.17956 2.65374 2.75540 3.27147 3.35702 3.43289 3.57399 3.66453 3.75284 3.87603 4.05989 4.12674 4.13859 4.21554 4.30537 4.46226 4.48588 4.58402 4.60183 4.72261 4.72409 4.77257 4.78842 4.83157 4.84867 4.87368 4.88561 4.96787 5.00150 5.14479 5.19058 5.28229 5.34290 5.40878 5.51256 5.60302 5.69551 5.70418 5.86312 6.17690 6.26517 6.42454 6.79224 6.89710 7.52979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.166 4.166 4 C -0.160 4.160 5 C -0.060 4.060 6 O -0.563 6.563 7 Si 0.988 3.012 8 H -0.256 1.256 9 H -0.252 1.252 10 H -0.256 1.256 11 C 0.076 3.924 12 N -0.561 5.561 13 C 0.288 3.712 14 N -0.516 5.516 15 C 0.180 3.820 16 C -0.238 4.238 17 C 0.587 3.413 18 O -0.542 6.542 19 N -0.575 5.575 20 N -0.296 5.296 21 C 0.025 3.975 22 C -0.102 4.102 23 C -0.411 4.411 24 Si 1.093 2.907 25 C -0.456 4.456 26 C -0.463 4.463 27 C -0.273 4.273 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.396 0.604 33 H 0.212 0.788 34 H 0.438 0.562 35 H 0.190 0.810 36 H 0.390 0.610 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 0.607 1.489 3.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.060 3.940 3 C -0.173 4.173 4 C -0.167 4.167 5 C -0.170 4.170 6 O -0.371 6.371 7 Si 0.809 3.191 8 H -0.180 1.180 9 H -0.175 1.175 10 H -0.179 1.179 11 C -0.051 4.051 12 N -0.167 5.167 13 C 0.055 3.945 14 N -0.230 5.230 15 C 0.011 3.989 16 C -0.246 4.246 17 C 0.375 3.625 18 O -0.419 6.419 19 N -0.320 5.320 20 N -0.112 5.112 21 C -0.103 4.103 22 C -0.141 4.141 23 C -0.498 4.498 24 Si 1.281 2.719 25 C -0.564 4.564 26 C -0.569 4.569 27 C -0.444 4.444 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.246 0.754 33 H 0.229 0.771 34 H 0.279 0.721 35 H 0.207 0.793 36 H 0.231 0.769 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.118 1.542 1.605 3.831 hybrid contribution 0.371 -0.258 -0.237 0.511 sum 3.489 1.283 1.368 3.961 Atomic orbital electron populations 1.21223 0.88967 1.04819 1.03497 1.20067 0.97457 0.89686 0.86753 1.19741 0.93268 0.94330 1.09981 1.19834 0.94776 0.90116 1.11992 1.24312 0.91264 1.12519 0.88862 1.86508 1.34992 1.86018 1.29625 0.85192 0.81528 0.72622 0.79796 1.17972 1.17526 1.17934 1.22205 0.84455 0.97057 1.01361 1.41535 1.10439 1.01817 1.62954 1.18755 0.89595 0.86727 0.99449 1.66504 1.40820 0.96384 1.19262 1.22920 0.89794 0.95136 0.91010 1.20434 0.95299 0.93130 1.15754 1.17806 0.86554 0.82532 0.75572 1.90682 1.14668 1.86943 1.49612 1.45353 1.08095 1.02452 1.76057 1.62947 1.49028 0.95812 1.03457 1.22606 0.98664 0.96822 0.92180 1.21203 0.98934 0.94148 0.99809 1.26407 1.06009 1.01402 1.15954 0.78288 0.64400 0.62552 0.66634 1.26171 1.06215 1.12240 1.11754 1.26320 1.21741 1.04923 1.03934 1.28303 1.09547 1.12714 0.93857 0.90245 0.89378 0.89378 0.90166 0.75434 0.77131 0.72083 0.79305 0.76924 0.91818 0.90448 0.90079 0.91742 0.89428 0.89658 0.90398 0.91337 0.90475 0.92247 0.92147 0.90929 0.90620 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.61 71.23 0.61 -0.49 16 2 C 0.07 0.66 5.98 -19.25 -0.12 0.54 16 3 C -0.17 -1.39 6.16 -20.19 -0.12 -1.52 16 4 C -0.16 -0.61 5.61 -18.64 -0.10 -0.71 16 5 C -0.06 0.02 1.87 71.24 0.13 0.16 16 6 O -0.56 -0.45 11.62 -148.98 -1.73 -2.18 16 7 Si 0.99 -3.93 26.09 68.60 1.79 -2.14 16 8 H -0.26 0.73 7.11 99.48 0.71 1.44 16 9 H -0.25 0.86 7.03 99.48 0.70 1.56 16 10 H -0.26 0.83 7.11 99.48 0.71 1.54 16 11 C 0.08 -0.05 10.44 82.97 0.87 0.81 16 12 N -0.56 -0.34 6.04 -192.24 -1.16 -1.50 16 13 C 0.29 2.06 8.42 134.02 1.13 3.19 16 14 N -0.52 -3.72 10.37 -191.74 -1.99 -5.71 16 15 C 0.18 0.75 10.69 85.20 0.91 1.66 16 16 C -0.24 -1.83 5.89 -19.99 -0.12 -1.94 16 17 C 0.59 5.33 7.85 86.73 0.68 6.02 16 18 O -0.54 -8.57 13.71 -3.96 -0.05 -8.63 16 19 N -0.57 -1.82 4.66 -175.72 -0.82 -2.64 16 20 N -0.30 -0.92 4.15 -334.14 -1.39 -2.31 16 21 C 0.02 -0.02 5.38 86.28 0.46 0.44 16 22 C -0.10 0.15 5.74 30.78 0.18 0.33 16 23 C -0.41 1.74 5.03 72.30 0.36 2.11 16 24 Si 1.09 -4.19 11.99 68.60 0.82 -3.36 16 25 C -0.46 1.86 8.65 113.37 0.98 2.84 16 26 C -0.46 -0.85 8.65 113.37 0.98 0.13 16 27 C -0.27 0.03 4.86 127.53 0.62 0.65 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.55 4.78 -2.38 -0.01 0.54 16 30 H 0.09 1.11 5.69 -2.39 -0.01 1.10 16 31 H 0.08 -0.15 7.15 -2.39 -0.02 -0.17 16 32 H 0.40 -3.21 8.74 -74.06 -0.65 -3.86 16 33 H 0.21 -1.70 6.31 -2.91 -0.02 -1.71 16 34 H 0.44 -2.32 8.96 -92.71 -0.83 -3.15 16 35 H 0.19 -0.72 6.39 -2.91 -0.02 -0.73 16 36 H 0.39 -1.14 6.88 -215.49 -1.48 -2.62 16 37 H 0.06 -0.29 7.78 -2.39 -0.02 -0.31 16 38 H 0.08 -0.02 8.03 -2.39 -0.02 -0.04 16 39 H 0.08 -0.25 8.14 -2.39 -0.02 -0.26 16 40 H 0.06 0.11 7.96 -2.39 -0.02 0.09 16 41 H 0.09 -0.55 7.99 -2.39 -0.02 -0.57 16 42 H 0.08 -0.40 7.99 -2.39 -0.02 -0.42 16 43 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 44 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 45 H 0.08 -0.40 7.96 -2.38 -0.02 -0.42 16 46 H 0.06 0.34 7.96 -2.39 -0.02 0.33 16 47 H 0.06 0.18 7.96 -2.38 -0.02 0.16 16 48 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 49 H 0.08 0.24 7.99 -2.39 -0.02 0.22 16 50 H 0.07 -0.24 7.92 -2.39 -0.02 -0.26 16 Total: 0.00 -23.57 394.32 1.72 -21.85 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: -1.21 Total: -7.58 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 7.46 Total: 14.20 kcal Atomic # 7 Polarization: -6.80 SS G_CDS: -5.35 Total: -12.16 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.79 Total: -10.81 kcal Atomic # 14 Polarization: -8.12 SS G_CDS: 2.61 Total: -5.50 kcal Total: -23.57 1.72 -21.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_12890568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.221 kcal (2) G-P(sol) polarization free energy of solvation -23.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds