Wall clock time and date at job start Sun Mar 7 2021 09:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86303 * 110.06317 * 2 1 4 4 C 1.87532 * 110.00124 * 238.64013 * 2 1 3 5 5 C 1.53929 * 106.84663 * 196.89768 * 4 2 1 6 6 C 1.52635 * 109.30987 * 57.20618 * 5 4 2 7 7 N 1.46355 * 111.88732 * 283.47185 * 6 5 4 8 8 N 1.36602 * 110.99737 * 203.19549 * 7 6 5 9 9 C 1.34777 * 119.99571 * 111.12481 * 8 7 6 10 10 O 1.21565 * 120.00304 * 354.97754 * 9 8 7 11 11 C 1.47721 * 119.99804 * 174.97044 * 9 8 7 12 12 C 1.39703 * 120.02588 * 179.97438 * 11 9 8 13 13 C 1.37667 * 119.97741 * 179.97438 * 12 11 9 14 14 C 1.39497 * 120.02351 * 0.02562 * 13 12 11 15 15 C 1.48281 * 119.97890 * 179.97438 * 14 13 12 16 16 C 1.39405 * 120.12049 * 359.72963 * 15 14 13 17 17 C 1.38003 * 119.86618 * 179.73874 * 16 15 14 18 18 C 1.38334 * 120.13027 * 0.51051 * 17 16 15 19 19 C 1.50701 * 119.87655 * 179.73947 * 18 17 16 20 20 O 1.42899 * 109.47338 * 245.02477 * 19 18 17 21 21 Si 1.86300 * 109.46704 * 5.02351 * 19 18 17 22 22 H 1.48500 * 109.47120 * 60.00170 * 21 19 18 23 23 H 1.48501 * 109.47212 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47199 * 299.99954 * 21 19 18 25 25 C 1.38337 * 120.25156 * 359.76630 * 18 17 16 26 26 C 1.37992 * 120.13307 * 359.97438 * 25 18 17 27 27 C 1.39510 * 120.05141 * 0.25602 * 14 13 12 28 28 C 1.37668 * 120.01808 * 359.48635 * 27 14 13 29 29 C 1.47724 * 111.30299 * 79.02270 * 7 6 5 30 30 H 1.09001 * 109.46809 * 298.63205 * 1 2 3 31 31 H 1.08998 * 109.47085 * 58.63422 * 1 2 3 32 32 H 1.08997 * 109.46604 * 178.63533 * 1 2 3 33 33 H 1.08994 * 109.47464 * 181.36658 * 3 2 1 34 34 H 1.09007 * 109.46803 * 301.37048 * 3 2 1 35 35 H 1.08996 * 109.46761 * 61.36366 * 3 2 1 36 36 H 1.09002 * 109.97534 * 316.23333 * 4 2 1 37 37 H 1.08993 * 109.97874 * 77.47481 * 4 2 1 38 38 H 1.09001 * 109.49582 * 177.14729 * 5 4 2 39 39 H 1.09000 * 109.50098 * 297.21888 * 5 4 2 40 40 H 1.08999 * 108.99235 * 162.85607 * 6 5 4 41 41 H 1.08997 * 108.99660 * 44.09395 * 6 5 4 42 42 H 0.96996 * 120.00014 * 291.12430 * 8 7 6 43 43 H 1.08002 * 120.01536 * 359.95950 * 12 11 9 44 44 H 1.08004 * 119.98610 * 180.02562 * 13 12 11 45 45 H 1.07995 * 120.06766 * 359.97438 * 16 15 14 46 46 H 1.07997 * 119.93641 * 180.23176 * 17 16 15 47 47 H 1.09001 * 109.46840 * 125.02192 * 19 18 17 48 48 H 0.96694 * 113.99943 * 59.99925 * 20 19 18 49 49 H 1.08005 * 119.93220 * 179.97438 * 25 18 17 50 50 H 1.07994 * 120.07134 * 179.97438 * 26 25 18 51 51 H 1.07996 * 119.98811 * 179.72521 * 27 14 13 52 52 H 1.08001 * 120.00869 * 180.25970 * 28 27 14 53 53 H 1.09000 * 109.94537 * 59.06500 * 29 7 6 54 54 H 1.09000 * 109.94558 * 180.31482 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5022 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5048 5 6 3.9817 -1.2500 -1.2282 6 6 4.0832 -2.0636 0.0592 7 7 3.9263 -1.2250 1.2484 8 7 4.5045 -1.8096 2.3393 9 6 5.6122 -1.2698 2.8853 10 8 6.1494 -0.3173 2.3543 11 6 6.1735 -1.8356 4.1291 12 6 7.3220 -1.2769 4.6952 13 6 7.8439 -1.8046 5.8546 14 6 7.2267 -2.8972 6.4639 15 6 7.7900 -3.4651 7.7125 16 6 8.9392 -2.9128 8.2761 17 6 9.4559 -3.4421 9.4411 18 6 8.8418 -4.5253 10.0438 19 6 9.4143 -5.1025 11.3127 20 8 9.8736 -6.4330 11.0661 21 14 10.8404 -4.0495 11.8856 22 1 10.3632 -2.6669 12.1420 23 1 11.4043 -4.6178 13.1364 24 1 11.8902 -4.0242 10.8356 25 6 7.7045 -5.0811 9.4858 26 6 7.1757 -4.5569 8.3240 27 6 6.0831 -3.4596 5.8964 28 6 5.5565 -2.9302 4.7398 29 6 2.5044 -0.9169 1.5041 30 1 -0.3633 0.4925 0.9020 31 1 -0.3633 0.5349 -0.8775 32 1 -0.3632 -1.0274 -0.0245 33 1 3.5918 1.7389 -0.0245 34 1 2.1242 2.2748 -0.8775 35 1 2.1642 2.2601 0.9019 36 1 1.9366 -1.8360 -1.6509 37 1 2.4231 -0.2849 -2.3889 38 1 4.3853 -1.8302 -2.0579 39 1 4.5490 -0.3255 -1.1206 40 1 5.0574 -2.5512 0.0949 41 1 3.3055 -2.8274 0.0585 42 1 4.1177 -2.6131 2.7210 43 1 7.8004 -0.4314 4.2233 44 1 8.7315 -1.3725 6.2926 45 1 9.4219 -2.0699 7.8040 46 1 10.3440 -3.0127 9.8807 47 1 8.6437 -5.1211 12.0834 48 1 10.5620 -6.4924 10.3897 49 1 7.2295 -5.9270 9.9605 50 1 6.2881 -4.9919 7.8891 51 1 5.6086 -4.3083 6.3665 52 1 4.6687 -3.3631 4.3029 53 1 1.9431 -1.8408 1.6439 54 1 2.4136 -0.2879 2.3897 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13158362.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:37 Heat of formation + Delta-G solvation = -12.183993 kcal Electronic energy + Delta-G solvation = -31704.333021 eV Core-core repulsion = 27537.537439 eV Total energy + Delta-G solvation = -4166.795582 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 384.178 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.52546 -40.79599 -39.55193 -38.39195 -37.49047 -35.05510 -34.05068 -32.70716 -31.95213 -31.52470 -30.42337 -29.31914 -28.34802 -27.55607 -27.03296 -25.21489 -24.69121 -23.93305 -22.62975 -22.33003 -21.82177 -21.31778 -19.48733 -18.62128 -18.17120 -17.77010 -17.06863 -16.77176 -16.38936 -16.30940 -16.02183 -15.63571 -15.51032 -15.26226 -15.13526 -14.97520 -14.92846 -14.75609 -14.58155 -14.39118 -14.18961 -14.08166 -13.97267 -13.80197 -13.60262 -13.50021 -13.21890 -13.18126 -13.10488 -12.96392 -12.75492 -12.60263 -12.19682 -12.04294 -12.02322 -11.97930 -11.91868 -11.50598 -11.40001 -10.82445 -10.79296 -10.76651 -10.42717 -10.38154 -10.22206 -10.09229 -9.96866 -9.66425 -9.09416 -0.70757 0.32092 0.38257 0.49517 1.17338 1.40371 1.43892 1.51107 1.79545 1.84926 1.90671 1.90851 2.16047 2.59675 2.62119 2.99485 3.31874 3.41025 3.55363 3.59920 3.68382 3.78994 3.84681 3.98066 4.00391 4.02969 4.15104 4.24783 4.26797 4.34452 4.41627 4.52180 4.57974 4.62553 4.66735 4.68035 4.73625 4.80719 4.81556 4.85610 4.86503 4.87058 4.90582 4.91913 5.06417 5.08979 5.10986 5.18649 5.24166 5.29717 5.39015 5.47519 5.48908 5.59303 5.63278 5.66481 5.76596 5.80421 5.92230 6.18989 6.36917 6.68704 7.46077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.095 2.905 3 C -0.466 4.466 4 C -0.415 4.415 5 C -0.103 4.103 6 C 0.026 3.974 7 N -0.301 5.301 8 N -0.573 5.573 9 C 0.571 3.429 10 O -0.560 6.560 11 C -0.147 4.147 12 C -0.068 4.068 13 C -0.122 4.122 14 C -0.022 4.022 15 C -0.061 4.061 16 C -0.108 4.108 17 C -0.134 4.134 18 C -0.118 4.118 19 C -0.078 4.078 20 O -0.552 6.552 21 Si 0.978 3.022 22 H -0.259 1.259 23 H -0.277 1.277 24 H -0.252 1.252 25 C -0.096 4.096 26 C -0.106 4.106 27 C -0.118 4.118 28 C -0.075 4.075 29 C -0.272 4.272 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.392 0.608 43 H 0.128 0.872 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.131 0.869 47 H 0.126 0.874 48 H 0.389 0.611 49 H 0.140 0.860 50 H 0.149 0.851 51 H 0.158 0.842 52 H 0.153 0.847 53 H 0.073 0.927 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -4.235 0.495 5.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.283 2.717 3 C -0.572 4.572 4 C -0.500 4.500 5 C -0.142 4.142 6 C -0.102 4.102 7 N -0.118 5.118 8 N -0.318 5.318 9 C 0.359 3.641 10 O -0.438 6.438 11 C -0.151 4.151 12 C -0.087 4.087 13 C -0.140 4.140 14 C -0.022 4.022 15 C -0.061 4.061 16 C -0.126 4.126 17 C -0.151 4.151 18 C -0.119 4.119 19 C -0.189 4.189 20 O -0.359 6.359 21 Si 0.803 3.197 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.176 1.176 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.136 4.136 28 C -0.094 4.094 29 C -0.443 4.443 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.234 0.766 43 H 0.146 0.854 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.149 0.851 47 H 0.144 0.856 48 H 0.238 0.762 49 H 0.157 0.843 50 H 0.166 0.834 51 H 0.175 0.825 52 H 0.171 0.829 53 H 0.092 0.908 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.258 -2.768 0.819 4.353 hybrid contribution -0.204 -0.876 -0.209 0.924 sum -3.462 -3.645 0.610 5.064 Atomic orbital electron populations 1.26130 1.19776 1.05215 1.05007 0.78266 0.65276 0.64752 0.63366 1.26351 1.06001 1.20704 1.04120 1.26454 0.99737 1.08911 1.14924 1.21200 0.97490 1.00403 0.95120 1.22595 1.02149 0.95454 0.89985 1.62970 1.15176 1.39215 0.94413 1.45408 1.28389 1.29424 1.28542 1.18449 0.79347 0.82479 0.83780 1.90746 1.60408 1.29101 1.63560 1.19932 0.99005 0.99916 0.96278 1.21234 0.93981 0.98697 0.94796 1.21377 1.01007 0.96338 0.95247 1.19145 0.94904 0.94664 0.93472 1.18926 0.95992 0.96743 0.94399 1.21435 0.95445 1.00177 0.95543 1.21165 1.00561 0.96948 0.96469 1.20547 0.96901 0.96537 0.97876 1.24990 1.06827 0.89771 0.97275 1.86492 1.60475 1.25605 1.63286 0.85277 0.77237 0.77770 0.79436 1.18320 1.20222 1.17625 1.21142 0.95115 0.99694 0.95484 1.21556 1.00325 0.95135 0.95375 1.21461 0.95509 1.00874 0.95708 1.21441 0.99297 0.93626 0.94997 1.28298 0.89616 1.08157 1.18214 0.91020 0.90435 0.90305 0.92536 0.90892 0.91842 0.89359 0.89728 0.90403 0.92043 0.91467 0.91821 0.76583 0.85363 0.83493 0.84014 0.85138 0.85628 0.76226 0.84261 0.83386 0.82477 0.82905 0.90822 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.50 8.65 113.37 0.98 3.49 16 2 Si 1.09 -5.09 11.99 68.60 0.82 -4.27 16 3 C -0.47 -0.58 8.65 113.37 0.98 0.40 16 4 C -0.41 1.62 5.04 72.30 0.36 1.98 16 5 C -0.10 0.00 5.74 30.79 0.18 0.18 16 6 C 0.03 0.01 5.38 86.29 0.46 0.48 16 7 N -0.30 -1.00 4.15 -334.13 -1.39 -2.39 16 8 N -0.57 -1.60 4.65 -175.69 -0.82 -2.42 16 9 C 0.57 4.96 7.87 86.75 0.68 5.64 16 10 O -0.56 -9.98 16.66 -3.92 -0.07 -10.05 16 11 C -0.15 -0.60 5.88 -20.06 -0.12 -0.72 16 12 C -0.07 -0.32 9.58 22.49 0.22 -0.11 16 13 C -0.12 -0.15 9.41 22.44 0.21 0.06 16 14 C -0.02 0.00 5.88 -20.00 -0.12 -0.12 16 15 C -0.06 0.01 5.88 -20.04 -0.12 -0.11 16 16 C -0.11 0.05 9.43 22.50 0.21 0.26 16 17 C -0.13 0.09 8.65 22.24 0.19 0.28 16 18 C -0.12 0.11 5.36 -19.82 -0.11 0.00 16 19 C -0.08 0.18 2.80 71.24 0.20 0.38 16 20 O -0.55 0.44 12.83 -148.98 -1.91 -1.47 16 21 Si 0.98 -1.74 25.13 68.60 1.72 -0.02 16 22 H -0.26 0.10 7.11 99.48 0.71 0.80 16 23 H -0.28 -0.56 7.11 99.48 0.71 0.15 16 24 H -0.25 0.46 7.04 99.48 0.70 1.16 16 25 C -0.10 0.14 9.67 22.23 0.21 0.35 16 26 C -0.11 0.21 9.43 22.49 0.21 0.43 16 27 C -0.12 0.32 9.41 22.44 0.21 0.53 16 28 C -0.08 0.16 9.52 22.49 0.21 0.37 16 29 C -0.27 0.47 4.85 127.53 0.62 1.09 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 32 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 33 H 0.06 0.32 7.96 -2.39 -0.02 0.30 16 34 H 0.07 -0.02 7.96 -2.38 -0.02 -0.03 16 35 H 0.06 0.11 7.96 -2.39 -0.02 0.09 16 36 H 0.09 -0.54 7.99 -2.39 -0.02 -0.56 16 37 H 0.08 -0.36 7.99 -2.39 -0.02 -0.38 16 38 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.06 0.22 7.96 -2.39 -0.02 0.21 16 40 H 0.07 0.18 8.03 -2.39 -0.02 0.16 16 41 H 0.06 -0.24 7.78 -2.39 -0.02 -0.26 16 42 H 0.39 -1.52 6.86 -215.50 -1.48 -3.00 16 43 H 0.13 0.83 7.64 -2.91 -0.02 0.80 16 44 H 0.15 -0.36 6.19 -2.91 -0.02 -0.38 16 45 H 0.14 -0.53 6.19 -2.91 -0.02 -0.55 16 46 H 0.13 -0.38 4.84 -2.91 -0.01 -0.40 16 47 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 48 H 0.39 -2.67 8.70 -74.06 -0.64 -3.32 16 49 H 0.14 -0.48 8.06 -2.91 -0.02 -0.51 16 50 H 0.15 -0.99 6.19 -2.91 -0.02 -1.01 16 51 H 0.16 -1.26 6.19 -2.91 -0.02 -1.28 16 52 H 0.15 -1.29 6.40 -2.91 -0.02 -1.31 16 53 H 0.07 -0.42 7.92 -2.39 -0.02 -0.44 16 54 H 0.08 0.00 7.99 -2.39 -0.02 -0.02 16 Total: 0.00 -21.14 430.54 3.61 -17.53 By element: Atomic # 1 Polarization: -11.32 SS G_CDS: -0.44 Total: -11.77 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 5.69 Total: 14.85 kcal Atomic # 7 Polarization: -2.60 SS G_CDS: -2.20 Total: -4.81 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.98 Total: -11.52 kcal Atomic # 14 Polarization: -6.83 SS G_CDS: 2.55 Total: -4.29 kcal Total: -21.14 3.61 -17.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13158362.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.346 kcal (2) G-P(sol) polarization free energy of solvation -21.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds