Wall clock time and date at job start Sun Mar 7 2021 09:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 109.98505 * 2 1 4 4 C 1.87523 * 110.00337 * 121.31724 * 2 1 3 5 5 C 1.53929 * 106.84928 * 163.09501 * 4 2 1 6 6 C 1.52620 * 109.31309 * 302.79746 * 5 4 2 7 7 N 1.46349 * 111.89177 * 76.52035 * 6 5 4 8 8 N 1.36610 * 110.99983 * 156.80623 * 7 6 5 9 9 C 1.34782 * 119.99576 * 235.43448 * 8 7 6 10 10 O 1.21638 * 120.00191 * 354.98742 * 9 8 7 11 11 C 1.47059 * 119.99369 * 174.98862 * 9 8 7 12 12 C 1.35863 * 125.42420 * 180.02562 * 11 9 8 13 13 C 1.41587 * 107.72946 * 179.97438 * 12 11 9 14 14 C 1.40070 * 133.38169 * 180.02562 * 13 12 11 15 15 C 1.36473 * 119.83017 * 179.97438 * 14 13 12 16 16 C 1.38899 * 120.61400 * 0.25115 * 15 14 13 17 17 C 1.50702 * 119.67354 * 179.74367 * 16 15 14 18 18 O 1.42899 * 109.47072 * 245.00475 * 17 16 15 19 19 Si 1.86300 * 109.47012 * 5.00216 * 17 16 15 20 20 H 1.48504 * 109.47303 * 59.99951 * 19 17 16 21 21 H 1.48499 * 109.47059 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47248 * 300.00033 * 19 17 16 23 23 C 1.37707 * 120.64873 * 359.46880 * 16 15 14 24 24 C 1.39185 * 119.81045 * 0.54417 * 23 16 15 25 25 N 1.37490 * 133.19167 * 179.73493 * 24 23 16 26 26 C 1.47725 * 111.30719 * 280.97772 * 7 6 5 27 27 H 1.09006 * 109.47474 * 298.68503 * 1 2 3 28 28 H 1.09007 * 109.47504 * 58.68832 * 1 2 3 29 29 H 1.09005 * 109.47501 * 178.68201 * 1 2 3 30 30 H 1.09001 * 109.46874 * 181.31678 * 3 2 1 31 31 H 1.08997 * 109.47049 * 301.31614 * 3 2 1 32 32 H 1.08995 * 109.46844 * 61.31245 * 3 2 1 33 33 H 1.09000 * 109.97726 * 43.75802 * 4 2 1 34 34 H 1.09002 * 110.05122 * 282.47505 * 4 2 1 35 35 H 1.09000 * 109.49880 * 182.83834 * 5 4 2 36 36 H 1.09005 * 109.49440 * 62.74986 * 5 4 2 37 37 H 1.09004 * 108.99358 * 315.89824 * 6 5 4 38 38 H 1.08998 * 108.93078 * 197.09991 * 6 5 4 39 39 H 0.96992 * 119.99808 * 55.43057 * 8 7 6 40 40 H 1.08005 * 126.13289 * 359.97438 * 12 11 9 41 41 H 1.08002 * 120.08052 * 0.02562 * 14 13 12 42 42 H 1.08002 * 119.69196 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.46960 * 124.99993 * 17 16 15 44 44 H 0.96699 * 114.00453 * 60.00014 * 18 17 16 45 45 H 1.08003 * 120.09945 * 180.23482 * 23 16 15 46 46 H 0.97005 * 125.60437 * 359.95631 * 25 24 23 47 47 H 1.09003 * 109.95170 * 179.68306 * 26 7 6 48 48 H 1.09003 * 109.94870 * 300.93730 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9159 1.5054 5 6 3.9816 -1.2492 1.2290 6 6 4.0830 -2.0637 -0.0577 7 7 3.9261 -1.2261 -1.2476 8 7 4.5042 -1.8116 -2.3381 9 6 5.4348 -1.1431 -3.0478 10 8 5.6943 0.0132 -2.7735 11 6 6.1365 -1.8118 -4.1537 12 6 7.0903 -1.2455 -4.9381 13 6 7.5096 -2.2183 -5.8775 14 6 8.4488 -2.2104 -6.9166 15 6 8.6366 -3.3323 -7.6706 16 6 7.9005 -4.4835 -7.4211 17 6 8.1210 -5.7087 -8.2706 18 8 6.9342 -5.9924 -9.0144 19 14 9.5329 -5.4029 -9.4469 20 1 10.7662 -5.1080 -8.6741 21 1 9.7505 -6.6103 -10.2836 22 1 9.2079 -4.2468 -10.3204 23 6 6.9754 -4.5181 -6.4017 24 6 6.7656 -3.3865 -5.6190 25 7 5.9309 -3.1159 -4.5605 26 6 2.5042 -0.9182 -1.5035 27 1 -0.3634 0.4933 0.9016 28 1 -0.3634 0.5341 -0.8780 29 1 -0.3634 -1.0274 -0.0236 30 1 3.5894 1.7411 -0.0236 31 1 2.1219 2.2748 -0.8779 32 1 2.1603 2.2608 0.9015 33 1 1.9366 -1.8346 1.6523 34 1 2.4244 -0.2837 2.3897 35 1 4.3854 -1.8286 2.0592 36 1 4.5488 -0.3247 1.1201 37 1 3.3054 -2.8275 -0.0563 38 1 5.0578 -2.5502 -0.0923 39 1 4.2449 -2.7083 -2.6016 40 1 7.4620 -0.2345 -4.8593 41 1 9.0235 -1.3189 -7.1201 42 1 9.3611 -3.3236 -8.4715 43 1 8.3596 -6.5572 -7.6294 44 1 6.6619 -5.2791 -9.6077 45 1 6.4107 -5.4192 -6.2131 46 1 5.3013 -3.7385 -4.1643 47 1 2.4133 -0.2899 -2.3896 48 1 1.9428 -1.8422 -1.6425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13158378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:53 Heat of formation + Delta-G solvation = -11.133046 kcal Electronic energy + Delta-G solvation = -27772.259038 eV Core-core repulsion = 23952.073018 eV Total energy + Delta-G solvation = -3820.186020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.68109 -40.82829 -39.16523 -38.35254 -36.89669 -35.03670 -33.30157 -32.12689 -30.74408 -30.40643 -29.45568 -28.43833 -27.71618 -27.00540 -25.24113 -23.96070 -22.98775 -22.09253 -21.91886 -21.16294 -19.68776 -18.47149 -18.41461 -17.87963 -16.94705 -16.78485 -16.31737 -15.94728 -15.84400 -15.60610 -15.26527 -15.08184 -14.99312 -14.88235 -14.71489 -14.48682 -14.39860 -14.25154 -14.14633 -13.88192 -13.63827 -13.30834 -13.20088 -13.18436 -13.08595 -12.57882 -12.54820 -12.18341 -12.17517 -12.11464 -12.00044 -11.53161 -11.46687 -10.95422 -10.91903 -10.89347 -10.47521 -10.45537 -10.26317 -9.85395 -9.32338 -8.82344 -0.32181 0.51660 1.04252 1.14445 1.25828 1.44683 1.53317 1.66041 1.75639 1.78645 1.93201 1.97823 2.34085 2.48866 2.77728 3.21318 3.41573 3.57897 3.64463 3.70048 3.84427 3.99207 4.01563 4.23638 4.28317 4.29469 4.38834 4.45082 4.47689 4.52390 4.58723 4.62034 4.62375 4.64252 4.74910 4.84393 4.89692 4.90293 4.94318 4.97038 5.16750 5.29229 5.31559 5.38413 5.39979 5.51656 5.61589 5.66066 5.66662 5.95910 6.10780 6.21078 6.35245 6.51793 7.37502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.033 2.967 3 C -0.444 4.444 4 C -0.411 4.411 5 C -0.100 4.100 6 C 0.025 3.975 7 N -0.273 5.273 8 N -0.585 5.585 9 C 0.600 3.400 10 O -0.490 6.490 11 C 0.018 3.982 12 C -0.099 4.099 13 C -0.116 4.116 14 C -0.049 4.049 15 C -0.155 4.155 16 C -0.089 4.089 17 C -0.080 4.080 18 O -0.539 6.539 19 Si 0.954 3.046 20 H -0.249 1.249 21 H -0.256 1.256 22 H -0.251 1.251 23 C -0.101 4.101 24 C 0.115 3.885 25 N -0.579 5.579 26 C -0.262 4.262 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.371 0.629 40 H 0.160 0.840 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.377 0.623 45 H 0.128 0.872 46 H 0.416 0.584 47 H 0.092 0.908 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -2.639 0.898 3.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.226 2.774 3 C -0.552 4.552 4 C -0.497 4.497 5 C -0.139 4.139 6 C -0.103 4.103 7 N -0.089 5.089 8 N -0.330 5.330 9 C 0.386 3.614 10 O -0.361 6.361 11 C -0.093 4.093 12 C -0.126 4.126 13 C -0.120 4.120 14 C -0.068 4.068 15 C -0.173 4.173 16 C -0.091 4.091 17 C -0.191 4.191 18 O -0.344 6.344 19 Si 0.777 3.223 20 H -0.173 1.173 21 H -0.180 1.180 22 H -0.174 1.174 23 C -0.122 4.122 24 C 0.005 3.995 25 N -0.184 5.184 26 C -0.435 4.435 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.209 0.791 40 H 0.177 0.823 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.224 0.776 45 H 0.146 0.854 46 H 0.254 0.746 47 H 0.110 0.890 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.961 -1.837 1.026 2.313 hybrid contribution -1.395 -1.272 -0.028 1.888 sum -2.356 -3.110 0.997 4.027 Atomic orbital electron populations 1.26125 1.20326 1.04534 1.04890 0.79190 0.65867 0.67742 0.64592 1.26024 1.07361 1.17651 1.04162 1.26390 1.00643 1.08139 1.14502 1.21187 0.96722 1.01152 0.94820 1.22583 1.02251 0.95278 0.90147 1.63020 1.14092 1.38100 0.93646 1.45481 1.41933 1.17483 1.28058 1.16966 0.78396 0.85874 0.80150 1.90863 1.63391 1.15236 1.66645 1.20093 1.03502 0.85033 1.00621 1.20962 0.96999 0.99970 0.94622 1.18212 1.00604 0.93692 0.99532 1.20362 0.95511 0.98219 0.92709 1.20536 1.01748 0.93315 1.01751 1.19987 0.96800 0.95603 0.96709 1.25001 0.97031 0.98077 0.98989 1.86514 1.43558 1.45315 1.59040 0.85616 0.77178 0.80606 0.78937 1.17272 1.18023 1.17450 1.19856 1.00562 0.96150 0.95586 1.18316 0.93971 0.96239 0.90986 1.41923 1.35887 1.11584 1.29049 1.28120 0.90710 1.07016 1.17661 0.90648 0.91023 0.91266 0.90278 0.91308 0.91323 0.90689 0.89964 0.90701 0.90120 0.93559 0.90063 0.79063 0.82286 0.85068 0.85921 0.86436 0.77550 0.85421 0.74570 0.88959 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.93 8.65 101.05 0.87 1.81 16 2 Si 1.03 -2.50 11.99 -169.99 -2.04 -4.54 16 3 C -0.44 0.12 8.65 101.05 0.87 1.00 16 4 C -0.41 0.88 5.03 37.64 0.19 1.07 16 5 C -0.10 0.12 5.74 -26.44 -0.15 -0.03 16 6 C 0.03 -0.03 5.38 -4.32 -0.02 -0.05 16 7 N -0.27 -0.16 4.15 -56.97 -0.24 -0.39 16 8 N -0.59 -0.17 4.71 30.35 0.14 -0.02 16 9 C 0.60 1.72 7.90 -12.68 -0.10 1.62 16 10 O -0.49 -3.27 17.17 5.24 0.09 -3.18 16 11 C 0.02 0.03 6.96 -82.30 -0.57 -0.54 16 12 C -0.10 -0.21 10.53 -39.16 -0.41 -0.63 16 13 C -0.12 -0.22 6.16 -106.93 -0.66 -0.87 16 14 C -0.05 -0.04 10.06 -39.53 -0.40 -0.43 16 15 C -0.15 -0.04 8.59 -39.97 -0.34 -0.38 16 16 C -0.09 -0.01 5.35 -104.57 -0.56 -0.57 16 17 C -0.08 0.07 2.79 36.01 0.10 0.17 16 18 O -0.54 0.10 12.83 -35.23 -0.45 -0.35 16 19 Si 0.95 -0.87 25.11 -169.99 -4.27 -5.14 16 20 H -0.25 0.06 7.11 56.52 0.40 0.46 16 21 H -0.26 -0.16 7.11 56.52 0.40 0.24 16 22 H -0.25 0.19 7.03 56.52 0.40 0.59 16 23 C -0.10 -0.03 9.69 -39.42 -0.38 -0.41 16 24 C 0.11 0.12 7.25 -83.97 -0.61 -0.49 16 25 N -0.58 0.28 6.07 -7.36 -0.04 0.24 16 26 C -0.26 0.22 4.86 60.52 0.29 0.51 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H 0.08 0.10 7.96 -51.93 -0.41 -0.32 16 31 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 32 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 33 H 0.07 -0.19 7.99 -51.93 -0.42 -0.61 16 34 H 0.08 -0.19 8.00 -51.93 -0.42 -0.60 16 35 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 36 H 0.08 -0.02 7.96 -51.93 -0.41 -0.43 16 37 H 0.05 -0.10 7.78 -51.93 -0.40 -0.51 16 38 H 0.08 -0.07 8.03 -51.93 -0.42 -0.49 16 39 H 0.37 -0.95 7.89 -185.16 -1.46 -2.41 16 40 H 0.16 0.24 8.06 -52.48 -0.42 -0.18 16 41 H 0.13 -0.15 8.06 -52.49 -0.42 -0.58 16 42 H 0.12 -0.13 4.80 -52.49 -0.25 -0.38 16 43 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 44 H 0.38 -1.21 8.70 45.56 0.40 -0.82 16 45 H 0.13 -0.12 8.06 -52.48 -0.42 -0.54 16 46 H 0.42 -1.46 8.13 -40.82 -0.33 -1.79 16 47 H 0.09 0.02 7.99 -51.93 -0.41 -0.39 16 48 H 0.05 -0.11 7.92 -51.93 -0.41 -0.52 16 LS Contribution 390.12 15.07 5.88 5.88 Total: 0.00 -8.03 390.12 -10.73 -18.76 By element: Atomic # 1 Polarization: -5.09 SS G_CDS: -7.93 Total: -13.01 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.88 Total: 1.76 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -0.14 Total: -0.18 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.36 Total: -3.53 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: -6.31 Total: -9.68 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -8.03 -10.73 -18.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13158378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.630 kcal (2) G-P(sol) polarization free energy of solvation -8.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds