Wall clock time and date at job start Sun Mar 7 2021 09:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 109.98505 * 2 1 4 4 C 1.87523 * 110.00337 * 121.31724 * 2 1 3 5 5 C 1.53929 * 106.84928 * 163.09501 * 4 2 1 6 6 C 1.52620 * 109.31309 * 302.79746 * 5 4 2 7 7 N 1.46349 * 111.89177 * 76.52035 * 6 5 4 8 8 N 1.36610 * 110.99983 * 156.80623 * 7 6 5 9 9 C 1.34782 * 119.99576 * 235.43448 * 8 7 6 10 10 O 1.21638 * 120.00191 * 354.98742 * 9 8 7 11 11 C 1.47059 * 119.99369 * 174.98862 * 9 8 7 12 12 C 1.35863 * 125.42420 * 180.02562 * 11 9 8 13 13 C 1.41587 * 107.72946 * 179.97438 * 12 11 9 14 14 C 1.40070 * 133.38169 * 180.02562 * 13 12 11 15 15 C 1.36473 * 119.83017 * 179.97438 * 14 13 12 16 16 C 1.38899 * 120.61400 * 0.25115 * 15 14 13 17 17 C 1.50702 * 119.67354 * 179.74367 * 16 15 14 18 18 O 1.42899 * 109.47072 * 245.00475 * 17 16 15 19 19 Si 1.86300 * 109.47012 * 5.00216 * 17 16 15 20 20 H 1.48504 * 109.47303 * 59.99951 * 19 17 16 21 21 H 1.48499 * 109.47059 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47248 * 300.00033 * 19 17 16 23 23 C 1.37707 * 120.64873 * 359.46880 * 16 15 14 24 24 C 1.39185 * 119.81045 * 0.54417 * 23 16 15 25 25 N 1.37490 * 133.19167 * 179.73493 * 24 23 16 26 26 C 1.47725 * 111.30719 * 280.97772 * 7 6 5 27 27 H 1.09006 * 109.47474 * 298.68503 * 1 2 3 28 28 H 1.09007 * 109.47504 * 58.68832 * 1 2 3 29 29 H 1.09005 * 109.47501 * 178.68201 * 1 2 3 30 30 H 1.09001 * 109.46874 * 181.31678 * 3 2 1 31 31 H 1.08997 * 109.47049 * 301.31614 * 3 2 1 32 32 H 1.08995 * 109.46844 * 61.31245 * 3 2 1 33 33 H 1.09000 * 109.97726 * 43.75802 * 4 2 1 34 34 H 1.09002 * 110.05122 * 282.47505 * 4 2 1 35 35 H 1.09000 * 109.49880 * 182.83834 * 5 4 2 36 36 H 1.09005 * 109.49440 * 62.74986 * 5 4 2 37 37 H 1.09004 * 108.99358 * 315.89824 * 6 5 4 38 38 H 1.08998 * 108.93078 * 197.09991 * 6 5 4 39 39 H 0.96992 * 119.99808 * 55.43057 * 8 7 6 40 40 H 1.08005 * 126.13289 * 359.97438 * 12 11 9 41 41 H 1.08002 * 120.08052 * 0.02562 * 14 13 12 42 42 H 1.08002 * 119.69196 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.46960 * 124.99993 * 17 16 15 44 44 H 0.96699 * 114.00453 * 60.00014 * 18 17 16 45 45 H 1.08003 * 120.09945 * 180.23482 * 23 16 15 46 46 H 0.97005 * 125.60437 * 359.95631 * 25 24 23 47 47 H 1.09003 * 109.95170 * 179.68306 * 26 7 6 48 48 H 1.09003 * 109.94870 * 300.93730 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9159 1.5054 5 6 3.9816 -1.2492 1.2290 6 6 4.0830 -2.0637 -0.0577 7 7 3.9261 -1.2261 -1.2476 8 7 4.5042 -1.8116 -2.3381 9 6 5.4348 -1.1431 -3.0478 10 8 5.6943 0.0132 -2.7735 11 6 6.1365 -1.8118 -4.1537 12 6 7.0903 -1.2455 -4.9381 13 6 7.5096 -2.2183 -5.8775 14 6 8.4488 -2.2104 -6.9166 15 6 8.6366 -3.3323 -7.6706 16 6 7.9005 -4.4835 -7.4211 17 6 8.1210 -5.7087 -8.2706 18 8 6.9342 -5.9924 -9.0144 19 14 9.5329 -5.4029 -9.4469 20 1 10.7662 -5.1080 -8.6741 21 1 9.7505 -6.6103 -10.2836 22 1 9.2079 -4.2468 -10.3204 23 6 6.9754 -4.5181 -6.4017 24 6 6.7656 -3.3865 -5.6190 25 7 5.9309 -3.1159 -4.5605 26 6 2.5042 -0.9182 -1.5035 27 1 -0.3634 0.4933 0.9016 28 1 -0.3634 0.5341 -0.8780 29 1 -0.3634 -1.0274 -0.0236 30 1 3.5894 1.7411 -0.0236 31 1 2.1219 2.2748 -0.8779 32 1 2.1603 2.2608 0.9015 33 1 1.9366 -1.8346 1.6523 34 1 2.4244 -0.2837 2.3897 35 1 4.3854 -1.8286 2.0592 36 1 4.5488 -0.3247 1.1201 37 1 3.3054 -2.8275 -0.0563 38 1 5.0578 -2.5502 -0.0923 39 1 4.2449 -2.7083 -2.6016 40 1 7.4620 -0.2345 -4.8593 41 1 9.0235 -1.3189 -7.1201 42 1 9.3611 -3.3236 -8.4715 43 1 8.3596 -6.5572 -7.6294 44 1 6.6619 -5.2791 -9.6077 45 1 6.4107 -5.4192 -6.2131 46 1 5.3013 -3.7385 -4.1643 47 1 2.4133 -0.2899 -2.3896 48 1 1.9428 -1.8422 -1.6425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13158378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:52 Heat of formation + Delta-G solvation = -7.089691 kcal Electronic energy + Delta-G solvation = -27772.083705 eV Core-core repulsion = 23952.073018 eV Total energy + Delta-G solvation = -3820.010687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.74082 -40.93252 -39.15012 -38.46938 -36.88145 -35.03218 -33.33334 -32.16554 -30.75430 -30.43673 -29.33957 -28.35519 -27.61690 -27.01053 -25.21354 -23.94964 -23.04526 -22.06779 -21.91105 -21.26333 -19.74045 -18.45906 -18.42983 -17.87732 -16.97629 -16.83055 -16.28730 -16.02958 -15.86526 -15.60887 -15.22985 -15.11188 -14.92454 -14.85247 -14.75878 -14.52978 -14.38860 -14.27177 -13.99177 -13.80413 -13.52108 -13.20988 -13.19903 -13.12686 -13.01824 -12.58200 -12.53592 -12.13574 -12.06203 -12.00642 -11.99530 -11.62472 -11.49070 -11.00818 -10.98083 -10.80984 -10.40691 -10.39550 -10.26913 -9.79096 -9.36812 -8.86511 -0.39694 0.48784 0.93656 1.21557 1.29497 1.51274 1.58266 1.74902 1.81075 1.90316 1.97714 2.10407 2.18551 2.60413 2.74083 3.24479 3.48798 3.59995 3.68994 3.73483 3.97789 3.98660 4.12148 4.22656 4.26700 4.37658 4.43450 4.49991 4.51225 4.65753 4.68631 4.70717 4.79867 4.80089 4.83558 4.84723 4.85760 4.90523 4.96501 5.08375 5.26451 5.29832 5.37583 5.46626 5.49694 5.54388 5.57070 5.66085 5.75860 5.93593 6.01806 6.20056 6.37371 6.72723 7.29090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.096 2.904 3 C -0.466 4.466 4 C -0.412 4.412 5 C -0.103 4.103 6 C 0.025 3.975 7 N -0.298 5.298 8 N -0.573 5.573 9 C 0.601 3.399 10 O -0.539 6.539 11 C 0.015 3.985 12 C -0.115 4.115 13 C -0.135 4.135 14 C -0.059 4.059 15 C -0.160 4.160 16 C -0.089 4.089 17 C -0.076 4.076 18 O -0.552 6.552 19 Si 0.983 3.017 20 H -0.258 1.258 21 H -0.278 1.278 22 H -0.251 1.251 23 C -0.104 4.104 24 C 0.109 3.891 25 N -0.564 5.564 26 C -0.273 4.273 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.388 0.612 40 H 0.155 0.845 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.389 0.611 45 H 0.142 0.858 46 H 0.431 0.569 47 H 0.077 0.923 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -4.335 1.146 5.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.284 2.716 3 C -0.572 4.572 4 C -0.499 4.499 5 C -0.142 4.142 6 C -0.103 4.103 7 N -0.114 5.114 8 N -0.317 5.317 9 C 0.388 3.612 10 O -0.413 6.413 11 C -0.096 4.096 12 C -0.142 4.142 13 C -0.139 4.139 14 C -0.077 4.077 15 C -0.178 4.178 16 C -0.091 4.091 17 C -0.186 4.186 18 O -0.359 6.359 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.204 1.204 22 H -0.175 1.175 23 C -0.124 4.124 24 C -0.002 4.002 25 N -0.170 5.170 26 C -0.445 4.445 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.228 0.772 40 H 0.173 0.827 41 H 0.162 0.838 42 H 0.152 0.848 43 H 0.145 0.855 44 H 0.238 0.762 45 H 0.160 0.840 46 H 0.271 0.729 47 H 0.095 0.905 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.016 -3.553 1.269 4.278 hybrid contribution -1.051 -0.742 -0.145 1.294 sum -3.067 -4.295 1.124 5.396 Atomic orbital electron populations 1.26169 1.20174 1.05087 1.04945 0.78251 0.65092 0.64837 0.63416 1.26349 1.06131 1.20675 1.04030 1.26420 0.99950 1.08862 1.14625 1.21214 0.97373 1.00567 0.95052 1.22616 1.02771 0.95453 0.89413 1.63005 1.15009 1.39328 0.94064 1.45320 1.40903 1.17868 1.27572 1.17133 0.78444 0.85392 0.80244 1.90834 1.65101 1.17244 1.68166 1.19894 1.03492 0.85832 1.00384 1.21076 0.97626 1.00218 0.95299 1.18396 1.01464 0.93990 1.00062 1.20588 0.95521 0.99063 0.92537 1.20729 1.01950 0.93219 1.01919 1.20159 0.96477 0.95873 0.96638 1.25000 0.96745 0.97995 0.98873 1.86486 1.43705 1.46282 1.59415 0.85199 0.76586 0.79297 0.78114 1.18222 1.20405 1.17516 1.20026 1.00713 0.96315 0.95387 1.18469 0.94068 0.96316 0.91314 1.41797 1.35730 1.10992 1.28510 1.28326 0.90151 1.07921 1.18070 0.90359 0.91284 0.90420 0.92319 0.92083 0.90862 0.89332 0.89584 0.89932 0.91736 0.91617 0.90420 0.77181 0.82691 0.83811 0.84785 0.85484 0.76154 0.84039 0.72858 0.90456 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.37 8.65 113.37 0.98 3.36 16 2 Si 1.10 -5.45 11.99 68.60 0.82 -4.63 16 3 C -0.47 -0.52 8.65 113.37 0.98 0.46 16 4 C -0.41 2.19 5.03 72.30 0.36 2.55 16 5 C -0.10 0.26 5.74 30.78 0.18 0.44 16 6 C 0.02 -0.06 5.38 86.28 0.46 0.40 16 7 N -0.30 -0.49 4.15 -334.16 -1.39 -1.88 16 8 N -0.57 -0.61 4.71 -176.14 -0.83 -1.44 16 9 C 0.60 4.37 7.90 86.56 0.68 5.05 16 10 O -0.54 -8.62 17.17 -4.15 -0.07 -8.69 16 11 C 0.02 0.07 6.96 39.91 0.28 0.34 16 12 C -0.11 -0.69 10.53 22.54 0.24 -0.46 16 13 C -0.13 -0.60 6.16 -21.36 -0.13 -0.74 16 14 C -0.06 -0.11 10.06 22.30 0.22 0.12 16 15 C -0.16 -0.04 8.59 22.02 0.19 0.15 16 16 C -0.09 0.04 5.35 -19.83 -0.11 -0.07 16 17 C -0.08 0.20 2.79 71.24 0.20 0.40 16 18 O -0.55 0.75 12.83 -148.98 -1.91 -1.16 16 19 Si 0.98 -2.16 25.11 68.60 1.72 -0.44 16 20 H -0.26 0.20 7.11 99.48 0.71 0.90 16 21 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 22 H -0.25 0.56 7.03 99.48 0.70 1.26 16 23 C -0.10 0.01 9.69 22.37 0.22 0.22 16 24 C 0.11 0.23 7.25 39.13 0.28 0.51 16 25 N -0.56 0.54 6.07 -177.19 -1.08 -0.53 16 26 C -0.27 0.45 4.86 127.53 0.62 1.07 16 27 H 0.08 -0.42 7.96 -2.38 -0.02 -0.44 16 28 H 0.07 -0.30 7.96 -2.38 -0.02 -0.31 16 29 H 0.08 -0.50 7.96 -2.38 -0.02 -0.52 16 30 H 0.06 0.30 7.96 -2.39 -0.02 0.29 16 31 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 32 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 33 H 0.09 -0.66 7.99 -2.39 -0.02 -0.68 16 34 H 0.09 -0.48 8.00 -2.39 -0.02 -0.50 16 35 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.06 0.05 7.96 -2.38 -0.02 0.03 16 37 H 0.07 -0.41 7.78 -2.39 -0.02 -0.43 16 38 H 0.08 -0.14 8.03 -2.39 -0.02 -0.16 16 39 H 0.39 -2.16 7.89 -215.50 -1.70 -3.86 16 40 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.14 -0.25 8.06 -2.91 -0.02 -0.28 16 42 H 0.13 -0.36 4.80 -2.91 -0.01 -0.37 16 43 H 0.13 -0.59 7.96 -2.39 -0.02 -0.61 16 44 H 0.39 -2.84 8.70 -74.06 -0.64 -3.48 16 45 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 46 H 0.43 -3.32 8.13 -92.70 -0.75 -4.07 16 47 H 0.08 0.11 7.99 -2.39 -0.02 0.10 16 48 H 0.07 -0.38 7.92 -2.39 -0.02 -0.40 16 Total: 0.00 -19.69 390.12 1.58 -18.11 By element: Atomic # 1 Polarization: -11.81 SS G_CDS: -1.35 Total: -13.16 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 5.66 Total: 13.82 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -3.29 Total: -3.85 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.98 Total: -9.85 kcal Atomic # 14 Polarization: -7.61 SS G_CDS: 2.54 Total: -5.06 kcal Total: -19.69 1.58 -18.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13158378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.023 kcal (2) G-P(sol) polarization free energy of solvation -19.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds