Wall clock time and date at job start Sun Mar 7 2021 09:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86301 * 109.98565 * 2 1 4 4 C 1.87518 * 110.00244 * 121.31805 * 2 1 3 5 5 C 1.53931 * 106.84847 * 163.09778 * 4 2 1 6 6 C 1.52623 * 109.31082 * 302.78966 * 5 4 2 7 7 N 1.46356 * 111.88724 * 76.52518 * 6 5 4 8 8 N 1.36603 * 111.00184 * 156.80268 * 7 6 5 9 9 C 1.34776 * 119.99877 * 235.45533 * 8 7 6 10 10 O 1.21579 * 120.00517 * 354.97237 * 9 8 7 11 11 C 1.47567 * 119.99509 * 174.97593 * 9 8 7 12 12 C 1.39422 * 120.12572 * 0.22521 * 11 9 8 13 13 C 1.39214 * 119.76106 * 180.25549 * 12 11 9 14 14 C 1.47812 * 120.00166 * 179.79870 * 13 12 11 15 15 C 1.35939 * 125.92973 * 179.72447 * 14 13 12 16 16 C 1.40967 * 106.74032 * 180.02562 * 15 14 13 17 17 C 1.34714 * 107.03293 * 359.97438 * 16 15 14 18 18 C 1.50694 * 125.66452 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47594 * 299.97629 * 18 17 16 20 20 Si 1.86304 * 109.46689 * 179.97438 * 18 17 16 21 21 H 1.48501 * 109.47277 * 300.00107 * 20 18 17 22 22 H 1.48499 * 109.46884 * 60.00601 * 20 18 17 23 23 H 1.48508 * 109.46729 * 180.02562 * 20 18 17 24 24 O 1.34342 * 108.66388 * 359.97438 * 17 16 15 25 25 C 1.39801 * 119.99624 * 359.51330 * 13 12 11 26 26 C 1.37812 * 120.24635 * 0.26302 * 25 13 12 27 27 C 1.38773 * 120.24584 * 359.96605 * 26 25 13 28 28 O 1.35648 * 120.00177 * 180.02562 * 27 26 25 29 29 C 1.47725 * 111.30762 * 280.97820 * 7 6 5 30 30 H 1.09004 * 109.47017 * 298.68458 * 1 2 3 31 31 H 1.09003 * 109.47282 * 58.67979 * 1 2 3 32 32 H 1.08990 * 109.47615 * 178.68656 * 1 2 3 33 33 H 1.09002 * 109.47089 * 181.31576 * 3 2 1 34 34 H 1.09002 * 109.47184 * 301.31275 * 3 2 1 35 35 H 1.08998 * 109.46946 * 61.31903 * 3 2 1 36 36 H 1.09002 * 109.98121 * 43.75928 * 4 2 1 37 37 H 1.09008 * 110.05168 * 282.47229 * 4 2 1 38 38 H 1.09001 * 109.49464 * 182.84675 * 5 4 2 39 39 H 1.08993 * 109.50025 * 62.74968 * 5 4 2 40 40 H 1.08992 * 108.99812 * 315.90582 * 6 5 4 41 41 H 1.09002 * 108.93342 * 197.10026 * 6 5 4 42 42 H 0.96996 * 119.99910 * 55.45289 * 8 7 6 43 43 H 1.08000 * 120.11661 * 0.02562 * 12 11 9 44 44 H 1.07994 * 126.62855 * 359.75559 * 15 14 13 45 45 H 1.08003 * 126.48477 * 180.02562 * 16 15 14 46 46 H 1.09008 * 109.47261 * 59.98117 * 18 17 16 47 47 H 0.96693 * 114.00332 * 180.02562 * 19 18 17 48 48 H 1.08003 * 119.88078 * 180.22752 * 25 13 12 49 49 H 1.07999 * 119.87665 * 179.97438 * 26 25 13 50 50 H 0.96705 * 113.99877 * 90.00969 * 28 27 26 51 51 H 1.08996 * 109.94914 * 179.68225 * 29 7 6 52 52 H 1.08998 * 109.94578 * 300.93741 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9159 1.5053 5 6 3.9816 -1.2491 1.2289 6 6 4.0830 -2.0638 -0.0577 7 7 3.9261 -1.2262 -1.2476 8 7 4.5042 -1.8116 -2.3381 9 6 5.4351 -1.1433 -3.0475 10 8 5.6946 0.0124 -2.7733 11 6 6.1394 -1.8144 -4.1571 12 6 5.8405 -3.1381 -4.4768 13 6 6.5133 -3.7655 -5.5217 14 6 6.2038 -5.1702 -5.8623 15 6 6.7804 -5.8954 -6.8570 16 6 6.1881 -7.1742 -6.8228 17 6 5.2895 -7.1662 -5.8193 18 6 4.4152 -8.3246 -5.4136 19 8 3.5864 -8.7043 -6.5139 20 14 3.3445 -7.8202 -3.9747 21 1 4.2058 -7.4257 -2.8311 22 1 2.4913 -6.6714 -4.3714 23 1 2.4834 -8.9620 -3.5744 24 8 5.3022 -5.9539 -5.2405 25 6 7.4775 -3.0652 -6.2526 26 6 7.7697 -1.7552 -5.9396 27 6 7.1086 -1.1214 -4.8971 28 8 7.3997 0.1683 -4.5936 29 6 2.5042 -0.9182 -1.5036 30 1 -0.3633 0.4933 0.9016 31 1 -0.3634 0.5342 -0.8779 32 1 -0.3634 -1.0273 -0.0236 33 1 3.5895 1.7411 -0.0236 34 1 2.1220 2.2748 -0.8780 35 1 2.1604 2.2608 0.9016 36 1 1.9366 -1.8347 1.6523 37 1 2.4244 -0.2836 2.3897 38 1 4.3853 -1.8287 2.0592 39 1 4.5489 -0.3248 1.1201 40 1 3.3054 -2.8275 -0.0564 41 1 5.0578 -2.5503 -0.0923 42 1 4.2447 -2.7082 -2.6018 43 1 5.0923 -3.6760 -3.9135 44 1 7.5416 -5.5560 -7.5437 45 1 6.4130 -8.0037 -7.4769 46 1 5.0414 -9.1679 -5.1223 47 1 2.9956 -9.4458 -6.3239 48 1 7.9957 -3.5526 -7.0652 49 1 8.5159 -1.2199 -6.5080 50 1 6.8596 0.8154 -5.0676 51 1 2.4134 -0.2900 -2.3896 52 1 1.9428 -1.8421 -1.6425 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13259648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:06:24 Heat of formation + Delta-G solvation = -61.988161 kcal Electronic energy + Delta-G solvation = -34313.617695 eV Core-core repulsion = 29791.061818 eV Total energy + Delta-G solvation = -4522.555877 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 390.162 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.70385 -41.50887 -40.09293 -38.25586 -38.03683 -37.73775 -34.91676 -34.22013 -33.02080 -32.71008 -30.99340 -30.11453 -29.40741 -28.39711 -27.61174 -26.38895 -25.77004 -24.43576 -23.43821 -22.79346 -21.95737 -21.58938 -21.12194 -19.70394 -19.00245 -18.83829 -18.24932 -17.77002 -17.12945 -16.80476 -16.72163 -16.49580 -16.33886 -16.02668 -15.54343 -15.22875 -15.13177 -14.81356 -14.78239 -14.68515 -14.43501 -14.37006 -14.27438 -14.08583 -13.96952 -13.83670 -13.57411 -13.53111 -13.25880 -13.19738 -13.13805 -13.08751 -13.00251 -12.77797 -12.29111 -12.11466 -12.09259 -12.03804 -11.78239 -11.24984 -11.04386 -10.85995 -10.69906 -10.60454 -10.38695 -10.37328 -10.27725 -10.05212 -9.70946 -8.88744 -0.54545 -0.20805 0.74630 0.91998 1.19329 1.36723 1.38129 1.52572 1.63808 1.73783 1.80309 1.81687 2.01203 2.08631 2.54265 2.68368 3.08931 3.16572 3.31854 3.46485 3.54143 3.60203 3.79180 3.93460 3.98002 3.98589 4.09927 4.13639 4.21968 4.37332 4.38964 4.48132 4.59028 4.60228 4.63802 4.65105 4.66265 4.70705 4.77564 4.81780 4.84336 4.89282 4.94801 5.01336 5.02194 5.10668 5.15956 5.23069 5.36424 5.41938 5.42245 5.45807 5.70313 5.77975 6.00541 6.32686 6.34050 6.45659 6.69845 7.60017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.031 2.969 3 C -0.442 4.442 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.025 3.975 7 N -0.273 5.273 8 N -0.586 5.586 9 C 0.575 3.425 10 O -0.490 6.490 11 C -0.159 4.159 12 C -0.057 4.057 13 C -0.033 4.033 14 C 0.035 3.965 15 C -0.186 4.186 16 C -0.164 4.164 17 C -0.008 4.008 18 C -0.042 4.042 19 O -0.541 6.541 20 Si 0.946 3.054 21 H -0.245 1.245 22 H -0.245 1.245 23 H -0.246 1.246 24 O -0.172 6.172 25 C -0.053 4.053 26 C -0.147 4.147 27 C 0.181 3.819 28 O -0.474 6.474 29 C -0.261 4.261 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.375 0.625 43 H 0.132 0.868 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.097 0.903 47 H 0.389 0.611 48 H 0.141 0.859 49 H 0.147 0.853 50 H 0.400 0.600 51 H 0.090 0.910 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -4.730 -0.854 5.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.223 2.777 3 C -0.551 4.551 4 C -0.496 4.496 5 C -0.138 4.138 6 C -0.103 4.103 7 N -0.089 5.089 8 N -0.332 5.332 9 C 0.362 3.638 10 O -0.362 6.362 11 C -0.164 4.164 12 C -0.076 4.076 13 C -0.033 4.033 14 C -0.015 4.015 15 C -0.205 4.205 16 C -0.183 4.183 17 C -0.058 4.058 18 C -0.151 4.151 19 O -0.349 6.349 20 Si 0.766 3.234 21 H -0.169 1.169 22 H -0.168 1.168 23 H -0.169 1.169 24 O -0.069 6.069 25 C -0.071 4.071 26 C -0.166 4.166 27 C 0.134 3.866 28 O -0.286 6.286 29 C -0.434 4.434 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.214 0.786 43 H 0.149 0.851 44 H 0.174 0.826 45 H 0.173 0.827 46 H 0.114 0.886 47 H 0.238 0.762 48 H 0.159 0.841 49 H 0.164 0.836 50 H 0.259 0.741 51 H 0.109 0.891 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.663 -2.889 0.422 3.360 hybrid contribution -0.859 -1.927 -0.974 2.324 sum -2.521 -4.816 -0.552 5.464 Atomic orbital electron populations 1.26117 1.20359 1.04511 1.04827 0.79225 0.65834 0.67797 0.64795 1.26013 1.07373 1.17609 1.04068 1.26383 1.00713 1.08086 1.14416 1.21182 0.96626 1.01136 0.94891 1.22578 1.02263 0.95260 0.90211 1.62965 1.13811 1.38277 0.93852 1.45529 1.41952 1.17818 1.27878 1.17750 0.78619 0.86193 0.81257 1.90813 1.62803 1.15664 1.66914 1.20267 1.00586 0.95284 1.00270 1.21290 0.97782 0.92999 0.95486 1.17567 0.99138 0.88623 0.97953 1.20236 0.94450 0.90999 0.95817 1.21856 1.03919 0.93997 1.00712 1.21516 0.98338 0.98860 0.99628 1.21320 1.01452 0.85024 0.98001 1.23740 0.97537 0.94677 0.99192 1.86466 1.55665 1.56064 1.36661 0.85676 0.79725 0.81851 0.76132 1.16862 1.16828 1.16894 1.83875 1.50613 1.20933 1.51517 1.21118 0.94594 0.93372 0.98018 1.21393 1.02068 0.95439 0.97658 1.18559 0.90867 0.86179 0.90991 1.84757 1.62340 1.12334 1.69180 1.28099 0.90989 1.06930 1.17427 0.90695 0.91054 0.91272 0.90267 0.91369 0.91382 0.90724 0.90040 0.90788 0.90165 0.93664 0.90057 0.78569 0.85059 0.82629 0.82659 0.88561 0.76225 0.84136 0.83553 0.74113 0.89088 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.67 8.65 101.05 0.87 1.54 16 2 Si 1.03 -1.69 11.99 -169.99 -2.04 -3.73 16 3 C -0.44 -0.14 8.65 101.05 0.87 0.73 16 4 C -0.41 0.56 5.03 37.64 0.19 0.74 16 5 C -0.10 0.02 5.74 -26.44 -0.15 -0.13 16 6 C 0.02 0.01 5.38 -4.31 -0.02 -0.02 16 7 N -0.27 -0.52 4.15 -56.97 -0.24 -0.76 16 8 N -0.59 -1.18 4.65 30.46 0.14 -1.04 16 9 C 0.58 2.34 7.87 -12.46 -0.10 2.24 16 10 O -0.49 -3.62 15.47 -16.65 -0.26 -3.87 16 11 C -0.16 -0.36 5.88 -104.89 -0.62 -0.98 16 12 C -0.06 -0.06 9.20 -38.78 -0.36 -0.41 16 13 C -0.03 -0.03 5.87 -105.03 -0.62 -0.64 16 14 C 0.03 0.06 7.03 -36.49 -0.26 -0.20 16 15 C -0.19 -0.14 10.26 -39.37 -0.40 -0.55 16 16 C -0.16 -0.20 10.77 -39.80 -0.43 -0.63 16 17 C -0.01 -0.01 6.25 -35.56 -0.22 -0.24 16 18 C -0.04 0.04 2.97 36.00 0.11 0.15 16 19 O -0.54 0.48 12.84 -35.23 -0.45 0.03 16 20 Si 0.95 -0.95 27.38 -169.99 -4.65 -5.60 16 21 H -0.25 0.01 7.11 56.52 0.40 0.41 16 22 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 23 H -0.25 0.41 7.11 56.52 0.40 0.81 16 24 O -0.17 -0.41 8.78 4.58 0.04 -0.37 16 25 C -0.05 0.03 9.54 -39.15 -0.37 -0.34 16 26 C -0.15 0.04 9.96 -39.54 -0.39 -0.35 16 27 C 0.18 0.33 6.72 -38.63 -0.26 0.07 16 28 O -0.47 -1.20 11.55 -40.59 -0.47 -1.67 16 29 C -0.26 -0.06 4.86 60.52 0.29 0.23 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 33 H 0.08 0.15 7.96 -51.93 -0.41 -0.26 16 34 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 35 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 36 H 0.07 -0.14 7.99 -51.93 -0.42 -0.55 16 37 H 0.08 -0.13 8.00 -51.92 -0.42 -0.55 16 38 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 39 H 0.08 0.06 7.96 -51.93 -0.41 -0.35 16 40 H 0.05 -0.04 7.78 -51.93 -0.40 -0.45 16 41 H 0.08 0.05 8.03 -51.93 -0.42 -0.37 16 42 H 0.38 -0.06 6.86 -185.16 -1.27 -1.33 16 43 H 0.13 -0.05 6.25 -52.49 -0.33 -0.38 16 44 H 0.16 -0.27 7.24 -52.49 -0.38 -0.65 16 45 H 0.16 -0.05 8.06 -52.48 -0.42 -0.47 16 46 H 0.10 -0.34 7.96 -51.92 -0.41 -0.75 16 47 H 0.39 -2.23 8.74 45.56 0.40 -1.83 16 48 H 0.14 -0.42 6.96 -52.48 -0.37 -0.79 16 49 H 0.15 -0.33 8.06 -52.49 -0.42 -0.75 16 50 H 0.40 -0.50 9.06 45.56 0.41 -0.09 16 51 H 0.09 0.10 7.99 -51.93 -0.41 -0.32 16 52 H 0.05 -0.04 7.92 -51.93 -0.41 -0.45 16 LS Contribution 429.56 15.07 6.47 6.47 Total: 0.00 -10.40 429.56 -10.70 -21.10 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: -7.38 Total: -11.80 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.86 Total: 1.24 kcal Atomic # 7 Polarization: -1.71 SS G_CDS: -0.09 Total: -1.80 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -1.14 Total: -5.88 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: -6.69 Total: -9.33 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -10.40 -10.70 -21.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13259648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.892 kcal (2) G-P(sol) polarization free energy of solvation -10.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds