Wall clock time and date at job start Sun Mar 7 2021 09:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86302 * 110.06454 * 2 1 4 4 C 1.87528 * 110.00191 * 238.63885 * 2 1 3 5 5 C 1.53930 * 106.84817 * 196.90199 * 4 2 1 6 6 C 1.52627 * 109.31159 * 57.20476 * 5 4 2 7 7 N 1.46358 * 111.89082 * 283.47472 * 6 5 4 8 8 N 1.36595 * 111.00482 * 203.19763 * 7 6 5 9 9 C 1.34773 * 120.00435 * 111.11967 * 8 7 6 10 10 O 1.21584 * 120.00035 * 354.98009 * 9 8 7 11 11 C 1.47651 * 120.00403 * 174.97548 * 9 8 7 12 12 C 1.40165 * 119.97456 * 0.02562 * 11 9 8 13 13 C 1.36348 * 120.67390 * 179.97438 * 12 11 9 14 14 C 1.39329 * 120.23720 * 0.02562 * 13 12 11 15 15 N 1.37397 * 133.25851 * 179.97438 * 14 13 12 16 16 C 1.36861 * 109.98335 * 179.97438 * 15 14 13 17 17 C 1.34183 * 109.96762 * 0.02562 * 16 15 14 18 18 C 1.50707 * 126.54074 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.46863 * 255.02057 * 18 17 16 20 20 Si 1.86299 * 109.47151 * 15.01957 * 18 17 16 21 21 H 1.48496 * 109.47087 * 60.00116 * 20 18 17 22 22 H 1.48501 * 109.47181 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47260 * 300.00199 * 20 18 17 24 24 C 1.40907 * 119.63650 * 0.27053 * 14 13 12 25 25 C 1.39191 * 119.97482 * 179.97438 * 11 9 8 26 26 C 1.47723 * 111.30716 * 79.01871 * 7 6 5 27 27 H 1.08999 * 109.47129 * 298.63809 * 1 2 3 28 28 H 1.09007 * 109.47259 * 58.63494 * 1 2 3 29 29 H 1.08998 * 109.47551 * 178.63706 * 1 2 3 30 30 H 1.09001 * 109.47314 * 181.36601 * 3 2 1 31 31 H 1.08995 * 109.47103 * 301.36511 * 3 2 1 32 32 H 1.09004 * 109.46816 * 61.36353 * 3 2 1 33 33 H 1.08998 * 109.97676 * 316.23583 * 4 2 1 34 34 H 1.08999 * 109.98050 * 77.47730 * 4 2 1 35 35 H 1.09005 * 109.49686 * 177.15101 * 5 4 2 36 36 H 1.08996 * 109.50178 * 297.21802 * 5 4 2 37 37 H 1.08997 * 108.99683 * 162.85972 * 6 5 4 38 38 H 1.08999 * 109.00092 * 44.09447 * 6 5 4 39 39 H 0.97006 * 119.99814 * 291.12633 * 8 7 6 40 40 H 1.08001 * 119.66413 * 359.95808 * 12 11 9 41 41 H 1.08005 * 119.88152 * 180.02562 * 13 12 11 42 42 H 0.97006 * 125.00877 * 359.97438 * 15 14 13 43 43 H 1.08003 * 125.01338 * 180.02562 * 16 15 14 44 44 H 1.08992 * 109.46997 * 135.02068 * 18 17 16 45 45 H 0.96694 * 113.99530 * 179.97438 * 19 18 17 46 46 H 1.08002 * 120.30665 * 0.02562 * 25 11 9 47 47 H 1.09010 * 109.94535 * 59.06289 * 26 7 6 48 48 H 1.08999 * 109.95474 * 180.32000 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5044 -0.9171 -1.5047 5 6 3.9815 -1.2501 -1.2281 6 6 4.0830 -2.0637 0.0593 7 7 3.9262 -1.2251 1.2485 8 7 4.5042 -1.8096 2.3394 9 6 5.6119 -1.2699 2.8855 10 8 6.1493 -0.3173 2.3544 11 6 6.1729 -1.8354 4.1287 12 6 5.5533 -2.9339 4.7403 13 6 6.0595 -3.4678 5.8883 14 6 7.2034 -2.9249 6.4697 15 7 7.9273 -3.2385 7.5946 16 6 8.9864 -2.3813 7.7234 17 6 8.9885 -1.5003 6.7112 18 6 9.9858 -0.3928 6.4877 19 8 9.3906 0.8604 6.8303 20 14 11.4842 -0.6814 7.5564 21 1 12.1027 -1.9836 7.2004 22 1 12.4667 0.4103 7.3366 23 1 11.0775 -0.7005 8.9845 24 6 7.8320 -1.8166 5.8680 25 6 7.3173 -1.2780 4.6918 26 6 2.5043 -0.9169 1.5043 27 1 -0.3633 0.4925 0.9019 28 1 -0.3634 0.5349 -0.8775 29 1 -0.3634 -1.0273 -0.0244 30 1 3.5918 1.7388 -0.0245 31 1 2.1243 2.2747 -0.8775 32 1 2.1641 2.2602 0.9020 33 1 1.9365 -1.8359 -1.6508 34 1 2.4230 -0.2849 -2.3889 35 1 4.3852 -1.8303 -2.0579 36 1 4.5489 -0.3257 -1.1205 37 1 5.0572 -2.5512 0.0950 38 1 3.3054 -2.8274 0.0586 39 1 4.1175 -2.6132 2.7211 40 1 4.6658 -3.3616 4.2979 41 1 5.5720 -4.3145 6.3485 42 1 7.7185 -3.9611 8.2073 43 1 9.7131 -2.4097 8.5218 44 1 10.2843 -0.3788 5.4395 45 1 9.9770 1.6199 6.7111 46 1 7.7983 -0.4318 4.2238 47 1 1.9428 -1.8408 1.6439 48 1 2.4134 -0.2879 2.3898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13287722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:06:46 Heat of formation + Delta-G solvation = -10.103056 kcal Electronic energy + Delta-G solvation = -28064.545821 eV Core-core repulsion = 24244.404464 eV Total energy + Delta-G solvation = -3820.141357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.41817 -40.81040 -38.61425 -37.70370 -37.22598 -34.82670 -33.32320 -31.99101 -30.68527 -30.05487 -29.36426 -28.36922 -27.52855 -26.39921 -25.48390 -23.78089 -23.42764 -21.82886 -21.38239 -20.53621 -19.04741 -18.72654 -18.36726 -17.99690 -17.10922 -16.59471 -16.15270 -15.89524 -15.53831 -15.23744 -15.11146 -14.89975 -14.81546 -14.71683 -14.62157 -14.52758 -14.27944 -14.04200 -13.82797 -13.80576 -13.53099 -13.41788 -13.23460 -13.10725 -12.95398 -12.67525 -12.47553 -12.19991 -12.00685 -12.00040 -11.96014 -11.73574 -11.20243 -10.83341 -10.71814 -10.55416 -10.34777 -10.18713 -10.06741 -9.56139 -9.26248 -8.76971 0.02261 0.24952 1.16808 1.42697 1.44096 1.45143 1.58203 1.79408 1.85913 1.90375 2.02337 2.14356 2.16834 2.58289 3.05577 3.46195 3.58718 3.63922 3.74569 3.89896 3.99241 4.03390 4.16356 4.20515 4.31325 4.39871 4.44149 4.54206 4.57353 4.63729 4.67423 4.69050 4.69438 4.77538 4.83896 4.85320 4.92224 4.97577 5.07367 5.10224 5.29937 5.30920 5.42192 5.43292 5.45674 5.56383 5.65376 5.73380 5.86541 6.03156 6.41056 6.47261 6.62311 6.72399 7.75224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.032 2.968 3 C -0.443 4.443 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.025 3.975 7 N -0.275 5.275 8 N -0.585 5.585 9 C 0.580 3.420 10 O -0.513 6.513 11 C -0.165 4.165 12 C -0.068 4.068 13 C -0.133 4.133 14 C 0.119 3.881 15 N -0.585 5.585 16 C 0.057 3.943 17 C -0.147 4.147 18 C -0.049 4.049 19 O -0.545 6.545 20 Si 0.944 3.056 21 H -0.250 1.250 22 H -0.252 1.252 23 H -0.249 1.249 24 C -0.100 4.100 25 C 0.010 3.990 26 C -0.260 4.260 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.377 0.623 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.421 0.579 43 H 0.173 0.827 44 H 0.075 0.925 45 H 0.378 0.622 46 H 0.140 0.860 47 H 0.053 0.947 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 -4.140 1.776 4.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.225 2.775 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.103 4.103 7 N -0.090 5.090 8 N -0.331 5.331 9 C 0.368 3.632 10 O -0.387 6.387 11 C -0.170 4.170 12 C -0.088 4.088 13 C -0.154 4.154 14 C 0.010 3.990 15 N -0.187 5.187 16 C -0.070 4.070 17 C -0.154 4.154 18 C -0.160 4.160 19 O -0.350 6.350 20 Si 0.766 3.234 21 H -0.173 1.173 22 H -0.176 1.176 23 H -0.173 1.173 24 C -0.104 4.104 25 C -0.009 4.009 26 C -0.433 4.433 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.216 0.784 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.259 0.741 43 H 0.190 0.810 44 H 0.092 0.908 45 H 0.225 0.775 46 H 0.158 0.842 47 H 0.071 0.929 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.003 -3.657 2.124 4.229 hybrid contribution -0.783 -1.327 0.406 1.593 sum -0.786 -4.984 2.530 5.644 Atomic orbital electron populations 1.26121 1.20392 1.04524 1.04796 0.79197 0.65735 0.67710 0.64843 1.26028 1.07364 1.17688 1.04101 1.26379 1.00824 1.08022 1.14373 1.21180 0.96456 1.01201 0.95050 1.22592 1.02088 0.95168 0.90417 1.62943 1.13734 1.38231 0.94135 1.45504 1.29337 1.29416 1.28809 1.17977 0.79033 0.82893 0.83301 1.90771 1.58911 1.26884 1.62131 1.19505 0.99444 1.00316 0.97757 1.20573 0.98741 0.94817 0.94673 1.19643 0.95597 1.02485 0.97651 1.18414 0.94925 0.96806 0.88877 1.41680 1.23735 1.30331 1.22959 1.21635 0.92644 0.92998 0.99716 1.19560 0.98973 0.99411 0.97429 1.24026 1.02257 0.84566 1.05114 1.86551 1.43466 1.15050 1.89957 0.85834 0.75984 0.81745 0.79854 1.17292 1.17551 1.17289 1.18889 0.97131 0.97446 0.96968 1.20655 0.92182 0.96659 0.91444 1.28067 0.90721 1.06997 1.17482 0.91067 0.90726 0.91246 0.90286 0.91387 0.91356 0.90776 0.90140 0.90964 0.90175 0.90231 0.93928 0.78416 0.85643 0.85502 0.74105 0.80995 0.90752 0.77481 0.84242 0.92869 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.72 8.65 101.05 0.87 1.60 16 2 Si 1.03 -1.76 11.99 -169.99 -2.04 -3.80 16 3 C -0.44 -0.14 8.65 101.05 0.87 0.73 16 4 C -0.41 0.48 5.04 37.64 0.19 0.67 16 5 C -0.10 -0.02 5.74 -26.44 -0.15 -0.17 16 6 C 0.03 0.02 5.38 -4.31 -0.02 -0.01 16 7 N -0.27 -0.55 4.15 -56.96 -0.24 -0.79 16 8 N -0.59 -1.15 4.65 30.48 0.14 -1.00 16 9 C 0.58 2.66 7.87 -12.42 -0.10 2.56 16 10 O -0.51 -4.32 16.66 5.29 0.09 -4.24 16 11 C -0.16 -0.50 5.87 -104.98 -0.62 -1.12 16 12 C -0.07 -0.03 9.46 -39.54 -0.37 -0.40 16 13 C -0.13 -0.02 10.00 -39.86 -0.40 -0.42 16 14 C 0.12 0.18 7.27 -83.96 -0.61 -0.43 16 15 N -0.58 0.36 6.05 -10.61 -0.06 0.29 16 16 C 0.06 0.01 10.43 -16.74 -0.17 -0.17 16 17 C -0.15 -0.31 5.61 -102.69 -0.58 -0.89 16 18 C -0.05 -0.03 3.05 36.01 0.11 0.08 16 19 O -0.54 -0.77 12.86 -35.23 -0.45 -1.22 16 20 Si 0.94 -0.85 26.09 -169.99 -4.43 -5.29 16 21 H -0.25 0.09 7.11 56.52 0.40 0.49 16 22 H -0.25 0.13 7.11 56.52 0.40 0.53 16 23 H -0.25 0.07 7.03 56.52 0.40 0.47 16 24 C -0.10 -0.33 6.34 -105.15 -0.67 -1.00 16 25 C 0.01 0.04 9.64 -38.86 -0.37 -0.33 16 26 C -0.26 0.03 4.85 60.52 0.29 0.32 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.08 0.15 7.96 -51.93 -0.41 -0.26 16 31 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 32 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 33 H 0.07 -0.12 7.99 -51.93 -0.42 -0.54 16 34 H 0.08 -0.11 7.99 -51.93 -0.42 -0.53 16 35 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.08 0.10 7.96 -51.93 -0.41 -0.31 16 37 H 0.08 0.11 8.03 -51.93 -0.42 -0.30 16 38 H 0.04 -0.03 7.78 -51.93 -0.40 -0.43 16 39 H 0.38 -0.30 6.85 -185.15 -1.27 -1.57 16 40 H 0.13 -0.30 6.38 -52.49 -0.33 -0.64 16 41 H 0.13 -0.31 8.06 -52.48 -0.42 -0.73 16 42 H 0.42 -1.63 8.96 -40.82 -0.37 -2.00 16 43 H 0.17 -0.44 6.30 -52.48 -0.33 -0.77 16 44 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 45 H 0.38 -1.15 8.74 45.56 0.40 -0.75 16 46 H 0.14 0.63 7.64 -52.49 -0.40 0.23 16 47 H 0.05 -0.07 7.92 -51.92 -0.41 -0.48 16 48 H 0.09 0.05 7.99 -51.93 -0.41 -0.37 16 LS Contribution 390.02 15.07 5.88 5.88 Total: 0.00 -9.82 390.02 -10.57 -20.39 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: -7.73 Total: -11.26 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.72 Total: 1.04 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -0.16 Total: -1.50 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.36 Total: -5.46 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: -6.47 Total: -9.09 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -9.82 -10.57 -20.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.287 kcal (2) G-P(sol) polarization free energy of solvation -9.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds