Wall clock time and date at job start Sun Mar 7 2021 09:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86302 * 110.06454 * 2 1 4 4 C 1.87528 * 110.00191 * 238.63885 * 2 1 3 5 5 C 1.53930 * 106.84817 * 196.90199 * 4 2 1 6 6 C 1.52627 * 109.31159 * 57.20476 * 5 4 2 7 7 N 1.46358 * 111.89082 * 283.47472 * 6 5 4 8 8 N 1.36595 * 111.00482 * 203.19763 * 7 6 5 9 9 C 1.34773 * 120.00435 * 111.11967 * 8 7 6 10 10 O 1.21584 * 120.00035 * 354.98009 * 9 8 7 11 11 C 1.47651 * 120.00403 * 174.97548 * 9 8 7 12 12 C 1.40165 * 119.97456 * 0.02562 * 11 9 8 13 13 C 1.36348 * 120.67390 * 179.97438 * 12 11 9 14 14 C 1.39329 * 120.23720 * 0.02562 * 13 12 11 15 15 N 1.37397 * 133.25851 * 179.97438 * 14 13 12 16 16 C 1.36861 * 109.98335 * 179.97438 * 15 14 13 17 17 C 1.34183 * 109.96762 * 0.02562 * 16 15 14 18 18 C 1.50707 * 126.54074 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.46863 * 255.02057 * 18 17 16 20 20 Si 1.86299 * 109.47151 * 15.01957 * 18 17 16 21 21 H 1.48496 * 109.47087 * 60.00116 * 20 18 17 22 22 H 1.48501 * 109.47181 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47260 * 300.00199 * 20 18 17 24 24 C 1.40907 * 119.63650 * 0.27053 * 14 13 12 25 25 C 1.39191 * 119.97482 * 179.97438 * 11 9 8 26 26 C 1.47723 * 111.30716 * 79.01871 * 7 6 5 27 27 H 1.08999 * 109.47129 * 298.63809 * 1 2 3 28 28 H 1.09007 * 109.47259 * 58.63494 * 1 2 3 29 29 H 1.08998 * 109.47551 * 178.63706 * 1 2 3 30 30 H 1.09001 * 109.47314 * 181.36601 * 3 2 1 31 31 H 1.08995 * 109.47103 * 301.36511 * 3 2 1 32 32 H 1.09004 * 109.46816 * 61.36353 * 3 2 1 33 33 H 1.08998 * 109.97676 * 316.23583 * 4 2 1 34 34 H 1.08999 * 109.98050 * 77.47730 * 4 2 1 35 35 H 1.09005 * 109.49686 * 177.15101 * 5 4 2 36 36 H 1.08996 * 109.50178 * 297.21802 * 5 4 2 37 37 H 1.08997 * 108.99683 * 162.85972 * 6 5 4 38 38 H 1.08999 * 109.00092 * 44.09447 * 6 5 4 39 39 H 0.97006 * 119.99814 * 291.12633 * 8 7 6 40 40 H 1.08001 * 119.66413 * 359.95808 * 12 11 9 41 41 H 1.08005 * 119.88152 * 180.02562 * 13 12 11 42 42 H 0.97006 * 125.00877 * 359.97438 * 15 14 13 43 43 H 1.08003 * 125.01338 * 180.02562 * 16 15 14 44 44 H 1.08992 * 109.46997 * 135.02068 * 18 17 16 45 45 H 0.96694 * 113.99530 * 179.97438 * 19 18 17 46 46 H 1.08002 * 120.30665 * 0.02562 * 25 11 9 47 47 H 1.09010 * 109.94535 * 59.06289 * 26 7 6 48 48 H 1.08999 * 109.95474 * 180.32000 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5044 -0.9171 -1.5047 5 6 3.9815 -1.2501 -1.2281 6 6 4.0830 -2.0637 0.0593 7 7 3.9262 -1.2251 1.2485 8 7 4.5042 -1.8096 2.3394 9 6 5.6119 -1.2699 2.8855 10 8 6.1493 -0.3173 2.3544 11 6 6.1729 -1.8354 4.1287 12 6 5.5533 -2.9339 4.7403 13 6 6.0595 -3.4678 5.8883 14 6 7.2034 -2.9249 6.4697 15 7 7.9273 -3.2385 7.5946 16 6 8.9864 -2.3813 7.7234 17 6 8.9885 -1.5003 6.7112 18 6 9.9858 -0.3928 6.4877 19 8 9.3906 0.8604 6.8303 20 14 11.4842 -0.6814 7.5564 21 1 12.1027 -1.9836 7.2004 22 1 12.4667 0.4103 7.3366 23 1 11.0775 -0.7005 8.9845 24 6 7.8320 -1.8166 5.8680 25 6 7.3173 -1.2780 4.6918 26 6 2.5043 -0.9169 1.5043 27 1 -0.3633 0.4925 0.9019 28 1 -0.3634 0.5349 -0.8775 29 1 -0.3634 -1.0273 -0.0244 30 1 3.5918 1.7388 -0.0245 31 1 2.1243 2.2747 -0.8775 32 1 2.1641 2.2602 0.9020 33 1 1.9365 -1.8359 -1.6508 34 1 2.4230 -0.2849 -2.3889 35 1 4.3852 -1.8303 -2.0579 36 1 4.5489 -0.3257 -1.1205 37 1 5.0572 -2.5512 0.0950 38 1 3.3054 -2.8274 0.0586 39 1 4.1175 -2.6132 2.7211 40 1 4.6658 -3.3616 4.2979 41 1 5.5720 -4.3145 6.3485 42 1 7.7185 -3.9611 8.2073 43 1 9.7131 -2.4097 8.5218 44 1 10.2843 -0.3788 5.4395 45 1 9.9770 1.6199 6.7111 46 1 7.7983 -0.4318 4.2238 47 1 1.9428 -1.8408 1.6439 48 1 2.4134 -0.2879 2.3898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13287722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:06:45 Heat of formation + Delta-G solvation = -8.055917 kcal Electronic energy + Delta-G solvation = -28064.457050 eV Core-core repulsion = 24244.404464 eV Total energy + Delta-G solvation = -3820.052586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.46962 -41.04050 -38.75025 -37.79425 -37.37274 -34.94216 -33.38506 -32.12378 -30.76195 -30.13109 -29.29988 -28.33383 -27.51026 -26.42563 -25.58948 -23.86065 -23.49516 -21.86060 -21.58804 -20.61494 -19.09967 -18.85092 -18.41207 -18.12162 -17.18457 -16.72039 -16.28600 -15.95307 -15.61993 -15.33183 -15.14544 -15.00969 -14.85290 -14.80484 -14.71538 -14.55186 -14.31506 -13.95495 -13.82873 -13.78739 -13.52208 -13.47545 -13.17156 -13.10196 -12.95850 -12.72650 -12.58168 -12.17957 -12.01582 -11.99193 -11.94991 -11.75796 -11.35709 -10.80681 -10.79653 -10.75384 -10.38889 -10.19863 -10.19351 -9.62687 -9.35241 -8.82992 -0.15425 0.17917 1.21021 1.43612 1.44629 1.50767 1.61919 1.84169 1.90645 1.92805 1.93922 2.07126 2.19389 2.63875 2.88444 3.39080 3.57978 3.65499 3.74251 3.79697 4.02711 4.05993 4.12543 4.18507 4.27867 4.40055 4.44203 4.52408 4.54965 4.58321 4.69506 4.76161 4.79446 4.82153 4.83462 4.87019 4.87893 4.94071 4.99463 5.11262 5.24870 5.31281 5.32386 5.46023 5.49347 5.55855 5.60682 5.67868 5.84814 5.95420 6.25025 6.45570 6.54973 6.87377 7.54013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.095 2.905 3 C -0.467 4.467 4 C -0.413 4.413 5 C -0.103 4.103 6 C 0.026 3.974 7 N -0.302 5.302 8 N -0.573 5.573 9 C 0.576 3.424 10 O -0.566 6.566 11 C -0.174 4.174 12 C -0.067 4.067 13 C -0.124 4.124 14 C 0.111 3.889 15 N -0.572 5.572 16 C 0.067 3.933 17 C -0.182 4.182 18 C -0.064 4.064 19 O -0.569 6.569 20 Si 0.995 3.005 21 H -0.254 1.254 22 H -0.259 1.259 23 H -0.252 1.252 24 C -0.127 4.127 25 C -0.015 4.015 26 C -0.272 4.272 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.393 0.607 40 H 0.157 0.843 41 H 0.162 0.838 42 H 0.438 0.562 43 H 0.201 0.799 44 H 0.070 0.930 45 H 0.393 0.607 46 H 0.115 0.885 47 H 0.073 0.927 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 -6.526 2.802 7.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.283 2.717 3 C -0.572 4.572 4 C -0.499 4.499 5 C -0.142 4.142 6 C -0.102 4.102 7 N -0.119 5.119 8 N -0.317 5.317 9 C 0.365 3.635 10 O -0.444 6.444 11 C -0.180 4.180 12 C -0.087 4.087 13 C -0.145 4.145 14 C 0.001 3.999 15 N -0.176 5.176 16 C -0.060 4.060 17 C -0.189 4.189 18 C -0.172 4.172 19 O -0.377 6.377 20 Si 0.816 3.184 21 H -0.178 1.178 22 H -0.183 1.183 23 H -0.176 1.176 24 C -0.132 4.132 25 C -0.034 4.034 26 C -0.443 4.443 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.234 0.766 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.280 0.720 43 H 0.217 0.783 44 H 0.088 0.912 45 H 0.243 0.757 46 H 0.133 0.867 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.495 -6.066 3.167 7.004 hybrid contribution -0.320 -0.549 0.089 0.641 sum -1.815 -6.614 3.256 7.592 Atomic orbital electron populations 1.26119 1.19700 1.05226 1.04993 0.78269 0.65295 0.64704 0.63395 1.26358 1.05972 1.20795 1.04075 1.26439 0.99707 1.08904 1.14846 1.21195 0.97495 1.00370 0.95124 1.22592 1.02127 0.95452 0.89989 1.62931 1.15125 1.39341 0.94467 1.45344 1.28398 1.29456 1.28546 1.18332 0.79264 0.82293 0.83571 1.90734 1.60644 1.29333 1.63732 1.19510 0.99561 1.01474 0.97447 1.20851 0.99396 0.93686 0.94728 1.20030 0.94697 1.02730 0.97004 1.18648 0.95413 0.96400 0.89430 1.41699 1.22988 1.30416 1.22468 1.22053 0.92691 0.91926 0.99356 1.19935 0.99631 1.00930 0.98424 1.24356 1.03082 0.83980 1.05818 1.86497 1.44991 1.16149 1.90067 0.85103 0.73890 0.80886 0.78515 1.17816 1.18291 1.17551 1.19170 0.98275 0.98587 0.97129 1.20579 0.93324 0.96955 0.92590 1.28305 0.89661 1.08133 1.18182 0.91056 0.90407 0.90268 0.92614 0.90862 0.91920 0.89299 0.89710 0.90388 0.92142 0.91527 0.91787 0.76571 0.82578 0.82065 0.72035 0.78270 0.91190 0.75746 0.86737 0.90822 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.12 8.65 113.37 0.98 3.11 16 2 Si 1.09 -3.87 11.99 68.60 0.82 -3.05 16 3 C -0.47 -1.18 8.65 113.37 0.98 -0.20 16 4 C -0.41 1.25 5.04 72.30 0.36 1.61 16 5 C -0.10 -0.11 5.74 30.78 0.18 0.06 16 6 C 0.03 0.05 5.38 86.28 0.46 0.51 16 7 N -0.30 -1.54 4.15 -334.14 -1.39 -2.93 16 8 N -0.57 -2.86 4.65 -175.73 -0.82 -3.68 16 9 C 0.58 6.87 7.87 86.73 0.68 7.55 16 10 O -0.57 -12.04 16.66 -3.98 -0.07 -12.11 16 11 C -0.17 -1.44 5.87 -20.09 -0.12 -1.56 16 12 C -0.07 -0.03 9.46 22.30 0.21 0.18 16 13 C -0.12 0.13 10.00 22.09 0.22 0.35 16 14 C 0.11 0.32 7.27 39.19 0.28 0.61 16 15 N -0.57 1.31 6.05 -187.49 -1.13 0.18 16 16 C 0.07 -0.01 10.43 82.98 0.87 0.85 16 17 C -0.18 -1.02 5.61 -18.61 -0.10 -1.13 16 18 C -0.06 -0.19 3.05 71.24 0.22 0.03 16 19 O -0.57 -2.93 12.86 -148.98 -1.92 -4.84 16 20 Si 1.00 -1.73 26.09 68.60 1.79 0.06 16 21 H -0.25 0.29 7.11 99.48 0.71 1.00 16 22 H -0.26 0.23 7.11 99.48 0.71 0.94 16 23 H -0.25 0.38 7.03 99.48 0.70 1.08 16 24 C -0.13 -1.10 6.34 -20.21 -0.13 -1.22 16 25 C -0.01 -0.17 9.64 22.74 0.22 0.05 16 26 C -0.27 0.06 4.85 127.53 0.62 0.68 16 27 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H 0.08 -0.37 7.96 -2.38 -0.02 -0.39 16 29 H 0.08 -0.48 7.96 -2.39 -0.02 -0.50 16 30 H 0.05 0.40 7.96 -2.39 -0.02 0.38 16 31 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 32 H 0.06 0.20 7.96 -2.39 -0.02 0.18 16 33 H 0.09 -0.48 7.99 -2.39 -0.02 -0.50 16 34 H 0.08 -0.29 7.99 -2.39 -0.02 -0.31 16 35 H 0.08 -0.02 8.14 -2.38 -0.02 -0.04 16 36 H 0.06 0.30 7.96 -2.39 -0.02 0.28 16 37 H 0.07 0.28 8.03 -2.39 -0.02 0.26 16 38 H 0.06 -0.17 7.78 -2.39 -0.02 -0.19 16 39 H 0.39 -0.77 6.85 -215.49 -1.48 -2.25 16 40 H 0.16 -1.03 6.38 -2.91 -0.02 -1.05 16 41 H 0.16 -1.31 8.06 -2.91 -0.02 -1.33 16 42 H 0.44 -4.28 8.96 -92.70 -0.83 -5.11 16 43 H 0.20 -1.32 6.30 -2.91 -0.02 -1.34 16 44 H 0.07 0.17 7.96 -2.39 -0.02 0.15 16 45 H 0.39 -1.52 8.74 -74.06 -0.65 -2.17 16 46 H 0.11 1.71 7.64 -2.91 -0.02 1.69 16 47 H 0.07 -0.33 7.92 -2.38 -0.02 -0.35 16 48 H 0.08 0.15 7.99 -2.39 -0.02 0.13 16 Total: 0.00 -26.63 390.02 2.02 -24.61 By element: Atomic # 1 Polarization: -8.52 SS G_CDS: -1.21 Total: -9.73 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 5.94 Total: 11.48 kcal Atomic # 7 Polarization: -3.09 SS G_CDS: -3.34 Total: -6.42 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.98 Total: -16.95 kcal Atomic # 14 Polarization: -5.60 SS G_CDS: 2.61 Total: -2.99 kcal Total: -26.63 2.02 -24.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.555 kcal (2) G-P(sol) polarization free energy of solvation -26.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds