Wall clock time and date at job start Sun Mar 7 2021 09:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.98480 * 2 1 4 4 C 1.87518 * 110.00238 * 121.31340 * 2 1 3 5 5 C 1.53932 * 106.84752 * 75.50353 * 4 2 1 6 6 C 1.52625 * 109.31546 * 57.20691 * 5 4 2 7 7 N 1.46363 * 111.88767 * 283.47872 * 6 5 4 8 8 N 1.36594 * 111.00078 * 203.19558 * 7 6 5 9 9 C 1.34772 * 120.00561 * 124.56396 * 8 7 6 10 10 O 1.21520 * 119.99426 * 5.00552 * 9 8 7 11 11 C 1.48167 * 120.00473 * 185.01164 * 9 8 7 12 12 C 1.39267 * 119.72158 * 180.02562 * 11 9 8 13 13 C 1.38632 * 119.05881 * 179.97438 * 12 11 9 14 14 C 1.38587 * 118.48687 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.32174 * 180.02562 * 14 13 12 16 16 O 1.42900 * 109.47131 * 64.99700 * 15 14 13 17 17 Si 1.86302 * 109.47231 * 184.99886 * 15 14 13 18 18 H 1.48496 * 109.47251 * 59.99567 * 17 15 14 19 19 H 1.48496 * 109.47128 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46434 * 300.00032 * 17 15 14 21 21 C 1.38600 * 119.35372 * 359.97438 * 14 13 12 22 22 N 1.31494 * 120.89914 * 359.72204 * 21 14 13 23 23 C 1.47720 * 111.30651 * 79.01658 * 7 6 5 24 24 H 1.08993 * 109.47060 * 298.68952 * 1 2 3 25 25 H 1.09001 * 109.46946 * 178.68641 * 1 2 3 26 26 H 1.09007 * 109.46924 * 58.68855 * 1 2 3 27 27 H 1.08995 * 109.47089 * 59.99836 * 3 2 1 28 28 H 1.08997 * 109.46927 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47002 * 299.99853 * 3 2 1 30 30 H 1.09001 * 109.97626 * 194.83692 * 4 2 1 31 31 H 1.08998 * 109.98046 * 316.07771 * 4 2 1 32 32 H 1.09005 * 109.49684 * 177.15347 * 5 4 2 33 33 H 1.09001 * 109.49919 * 297.21965 * 5 4 2 34 34 H 1.09003 * 108.99743 * 44.09051 * 6 5 4 35 35 H 1.08997 * 109.00095 * 162.93603 * 6 5 4 36 36 H 0.97003 * 119.99703 * 304.56117 * 8 7 6 37 37 H 1.07999 * 120.47618 * 359.97307 * 12 11 9 38 38 H 1.08000 * 120.75429 * 180.02562 * 13 12 11 39 39 H 1.08998 * 109.47234 * 304.99909 * 15 14 13 40 40 H 0.96696 * 114.00171 * 59.99887 * 16 15 14 41 41 H 1.07994 * 119.55090 * 180.02562 * 21 14 13 42 42 H 1.08998 * 109.95087 * 180.31930 * 23 7 6 43 43 H 1.09001 * 109.95012 * 59.06458 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9158 1.5054 5 6 2.3105 -2.4178 1.2300 6 6 3.0399 -2.7934 -0.0570 7 7 2.3060 -2.3593 -1.2466 8 7 2.6566 -3.1038 -2.3368 9 6 1.7091 -3.7491 -3.0454 10 8 0.5353 -3.5962 -2.7705 11 6 2.0984 -4.6450 -4.1595 12 6 1.1144 -5.3084 -4.8881 13 6 1.4941 -6.1429 -5.9280 14 6 2.8451 -6.2848 -6.2021 15 6 3.3040 -7.1809 -7.3235 16 8 2.8487 -6.6537 -8.5712 17 14 5.1650 -7.2671 -7.3277 18 1 5.6381 -7.8149 -6.0311 19 1 5.6172 -8.1496 -8.4331 20 1 5.7231 -5.9047 -7.5226 21 6 3.7701 -5.5937 -5.4354 22 7 3.3820 -4.8038 -4.4584 23 6 2.5043 -0.9182 -1.5035 24 1 -0.3633 0.4933 0.9014 25 1 -0.3633 -1.0274 -0.0236 26 1 -0.3633 0.5341 -0.8781 27 1 2.1410 2.2679 0.8899 28 1 3.5897 1.7410 0.0005 29 1 2.1410 2.2679 -0.8900 30 1 3.5623 -0.6975 1.6513 31 1 1.9385 -0.6218 2.3893 32 1 2.7170 -2.9954 2.0603 33 1 1.2475 -2.6337 1.1226 34 1 4.0240 -2.3248 -0.0568 35 1 3.1625 -3.8759 -0.0924 36 1 3.5878 -3.1680 -2.6011 37 1 0.0703 -5.1748 -4.6466 38 1 0.7538 -6.6705 -6.5112 39 1 2.8943 -8.1808 -7.1804 40 1 3.1750 -5.7643 -8.7649 41 1 4.8237 -5.7015 -5.6465 42 1 1.9446 -0.6179 -2.3893 43 1 3.5646 -0.7079 -1.6434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13287726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:06:58 Heat of formation + Delta-G solvation = -33.463584 kcal Electronic energy + Delta-G solvation = -23383.203812 eV Core-core repulsion = 19974.039367 eV Total energy + Delta-G solvation = -3409.164445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.85412 -40.49752 -38.49075 -37.89160 -34.95726 -33.88840 -33.00026 -31.46360 -29.40061 -28.39007 -27.88422 -27.54787 -25.19073 -24.95046 -23.50823 -21.95953 -21.67092 -19.40203 -18.76390 -18.28440 -17.49040 -16.84504 -16.81851 -16.40969 -16.19826 -15.61133 -15.45352 -15.01870 -14.92685 -14.81784 -14.55986 -14.28887 -14.15749 -14.07264 -13.82664 -13.63016 -13.55948 -13.25255 -13.13119 -13.00329 -12.68176 -12.33866 -12.14339 -12.08229 -12.03171 -11.40613 -11.07896 -11.01760 -10.85060 -10.66126 -10.60005 -10.38000 -10.30763 -10.05269 -9.70766 -0.56395 0.04487 0.94302 1.27301 1.35272 1.37572 1.69042 1.76603 1.77790 1.82746 2.05258 2.55075 2.73335 2.89475 3.23777 3.37801 3.42214 3.64082 3.74587 3.91459 3.96193 4.09729 4.16055 4.34446 4.40231 4.49631 4.51817 4.61236 4.66687 4.67586 4.72187 4.82970 4.83554 4.90327 4.95035 4.95885 5.02989 5.23481 5.34697 5.37148 5.43495 5.70451 5.78420 6.25944 6.30045 6.33677 6.64656 7.55751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.031 2.969 3 C -0.450 4.450 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.278 5.278 8 N -0.569 5.569 9 C 0.588 3.412 10 O -0.503 6.503 11 C 0.084 3.916 12 C -0.106 4.106 13 C -0.049 4.049 14 C -0.151 4.151 15 C -0.079 4.079 16 O -0.534 6.534 17 Si 0.943 3.057 18 H -0.246 1.246 19 H -0.247 1.247 20 H -0.247 1.247 21 C 0.095 3.905 22 N -0.455 5.455 23 C -0.261 4.261 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.390 0.610 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.378 0.622 41 H 0.158 0.842 42 H 0.090 0.910 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 0.029 -0.298 3.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.224 2.776 3 C -0.558 4.558 4 C -0.496 4.496 5 C -0.138 4.138 6 C -0.102 4.102 7 N -0.094 5.094 8 N -0.313 5.313 9 C 0.372 3.628 10 O -0.374 6.374 11 C -0.055 4.055 12 C -0.127 4.127 13 C -0.075 4.075 14 C -0.154 4.154 15 C -0.190 4.190 16 O -0.339 6.339 17 Si 0.765 3.235 18 H -0.169 1.169 19 H -0.170 1.170 20 H -0.171 1.171 21 C -0.064 4.064 22 N -0.166 5.166 23 C -0.434 4.434 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.142 0.858 40 H 0.226 0.774 41 H 0.175 0.825 42 H 0.109 0.891 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.144 -0.130 0.443 3.178 hybrid contribution 0.681 0.185 -0.781 1.053 sum 3.825 0.055 -0.338 3.841 Atomic orbital electron populations 1.26019 1.19786 1.05222 1.04077 0.79218 0.68025 0.65565 0.64776 1.26115 1.06293 1.18602 1.04810 1.26375 1.06137 1.02674 1.14418 1.21185 1.01904 0.95828 0.94920 1.22564 0.95978 1.01604 0.90016 1.62978 1.52681 0.99787 0.93973 1.45344 1.09855 1.49087 1.26977 1.17632 0.85280 0.79121 0.80753 1.90801 1.17198 1.62302 1.67136 1.21170 0.89518 0.98018 0.96784 1.22229 1.01799 0.94625 0.94033 1.21565 0.95654 0.95389 0.94889 1.21618 0.95214 0.99569 0.98981 1.24972 1.12335 0.99005 0.82714 1.86554 1.75725 1.36538 1.35084 0.85756 0.73587 0.82058 0.82132 1.16897 1.17024 1.17089 1.22651 0.99806 0.92596 0.91393 1.67542 1.17514 1.15880 1.15711 1.28095 1.04586 0.93302 1.17396 0.91385 0.90298 0.91359 0.90706 0.91232 0.91060 0.90676 0.90057 0.90778 0.90222 0.93513 0.90058 0.76992 0.82775 0.83203 0.85750 0.77433 0.82540 0.89126 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.07 8.65 101.05 0.87 0.81 16 2 Si 1.03 -1.82 11.99 -169.99 -2.04 -3.86 16 3 C -0.45 0.70 8.65 101.05 0.87 1.58 16 4 C -0.41 0.62 5.04 37.64 0.19 0.81 16 5 C -0.10 0.05 5.74 -26.44 -0.15 -0.10 16 6 C 0.03 0.00 5.38 -4.31 -0.02 -0.02 16 7 N -0.28 -0.51 4.15 -56.96 -0.24 -0.75 16 8 N -0.57 -1.31 4.69 30.60 0.14 -1.16 16 9 C 0.59 2.36 7.91 -12.18 -0.10 2.26 16 10 O -0.50 -3.50 16.65 5.35 0.09 -3.41 16 11 C 0.08 0.20 6.75 -83.01 -0.56 -0.36 16 12 C -0.11 -0.10 9.63 -39.05 -0.38 -0.48 16 13 C -0.05 0.03 9.83 -39.31 -0.39 -0.35 16 14 C -0.15 0.15 5.37 -104.36 -0.56 -0.41 16 15 C -0.08 0.18 2.82 36.01 0.10 0.28 16 16 O -0.53 0.77 12.84 -35.23 -0.45 0.32 16 17 Si 0.94 -2.19 25.16 -169.99 -4.28 -6.47 16 18 H -0.25 0.41 7.11 56.52 0.40 0.81 16 19 H -0.25 0.17 7.11 56.52 0.40 0.57 16 20 H -0.25 0.56 7.04 56.52 0.40 0.95 16 21 C 0.10 -0.01 9.84 -17.56 -0.17 -0.19 16 22 N -0.46 -0.72 9.55 -9.80 -0.09 -0.81 16 23 C -0.26 -0.06 4.86 60.52 0.29 0.23 16 24 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 25 H 0.08 0.13 7.96 -51.93 -0.41 -0.28 16 26 H 0.07 0.03 7.96 -51.92 -0.41 -0.39 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.15 7.99 -51.93 -0.42 -0.56 16 31 H 0.08 -0.15 7.99 -51.93 -0.42 -0.56 16 32 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 33 H 0.08 0.03 7.96 -51.93 -0.41 -0.39 16 34 H 0.05 -0.04 7.78 -51.93 -0.40 -0.45 16 35 H 0.08 0.04 8.03 -51.93 -0.42 -0.38 16 36 H 0.39 0.33 8.16 -185.16 -1.51 -1.18 16 37 H 0.15 0.09 7.64 -52.49 -0.40 -0.31 16 38 H 0.15 -0.35 8.06 -52.49 -0.42 -0.78 16 39 H 0.12 -0.41 7.96 -51.93 -0.41 -0.82 16 40 H 0.38 -1.71 8.70 45.56 0.40 -1.31 16 41 H 0.16 -0.31 4.88 -52.49 -0.26 -0.56 16 42 H 0.09 0.11 7.99 -51.93 -0.41 -0.31 16 43 H 0.05 -0.04 7.92 -51.93 -0.41 -0.45 16 LS Contribution 353.75 15.07 5.33 5.33 Total: 0.00 -6.94 353.75 -8.73 -15.67 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -7.20 Total: -8.92 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 0.01 Total: 4.06 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -0.19 Total: -2.72 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: -0.36 Total: -3.09 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: -6.32 Total: -10.33 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -6.94 -8.73 -15.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.797 kcal (2) G-P(sol) polarization free energy of solvation -6.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds