Wall clock time and date at job start Sun Mar 7 2021 09:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.98480 * 2 1 4 4 C 1.87518 * 110.00238 * 121.31340 * 2 1 3 5 5 C 1.53932 * 106.84752 * 75.50353 * 4 2 1 6 6 C 1.52625 * 109.31546 * 57.20691 * 5 4 2 7 7 N 1.46363 * 111.88767 * 283.47872 * 6 5 4 8 8 N 1.36594 * 111.00078 * 203.19558 * 7 6 5 9 9 C 1.34772 * 120.00561 * 124.56396 * 8 7 6 10 10 O 1.21520 * 119.99426 * 5.00552 * 9 8 7 11 11 C 1.48167 * 120.00473 * 185.01164 * 9 8 7 12 12 C 1.39267 * 119.72158 * 180.02562 * 11 9 8 13 13 C 1.38632 * 119.05881 * 179.97438 * 12 11 9 14 14 C 1.38587 * 118.48687 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.32174 * 180.02562 * 14 13 12 16 16 O 1.42900 * 109.47131 * 64.99700 * 15 14 13 17 17 Si 1.86302 * 109.47231 * 184.99886 * 15 14 13 18 18 H 1.48496 * 109.47251 * 59.99567 * 17 15 14 19 19 H 1.48496 * 109.47128 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46434 * 300.00032 * 17 15 14 21 21 C 1.38600 * 119.35372 * 359.97438 * 14 13 12 22 22 N 1.31494 * 120.89914 * 359.72204 * 21 14 13 23 23 C 1.47720 * 111.30651 * 79.01658 * 7 6 5 24 24 H 1.08993 * 109.47060 * 298.68952 * 1 2 3 25 25 H 1.09001 * 109.46946 * 178.68641 * 1 2 3 26 26 H 1.09007 * 109.46924 * 58.68855 * 1 2 3 27 27 H 1.08995 * 109.47089 * 59.99836 * 3 2 1 28 28 H 1.08997 * 109.46927 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47002 * 299.99853 * 3 2 1 30 30 H 1.09001 * 109.97626 * 194.83692 * 4 2 1 31 31 H 1.08998 * 109.98046 * 316.07771 * 4 2 1 32 32 H 1.09005 * 109.49684 * 177.15347 * 5 4 2 33 33 H 1.09001 * 109.49919 * 297.21965 * 5 4 2 34 34 H 1.09003 * 108.99743 * 44.09051 * 6 5 4 35 35 H 1.08997 * 109.00095 * 162.93603 * 6 5 4 36 36 H 0.97003 * 119.99703 * 304.56117 * 8 7 6 37 37 H 1.07999 * 120.47618 * 359.97307 * 12 11 9 38 38 H 1.08000 * 120.75429 * 180.02562 * 13 12 11 39 39 H 1.08998 * 109.47234 * 304.99909 * 15 14 13 40 40 H 0.96696 * 114.00171 * 59.99887 * 16 15 14 41 41 H 1.07994 * 119.55090 * 180.02562 * 21 14 13 42 42 H 1.08998 * 109.95087 * 180.31930 * 23 7 6 43 43 H 1.09001 * 109.95012 * 59.06458 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9158 1.5054 5 6 2.3105 -2.4178 1.2300 6 6 3.0399 -2.7934 -0.0570 7 7 2.3060 -2.3593 -1.2466 8 7 2.6566 -3.1038 -2.3368 9 6 1.7091 -3.7491 -3.0454 10 8 0.5353 -3.5962 -2.7705 11 6 2.0984 -4.6450 -4.1595 12 6 1.1144 -5.3084 -4.8881 13 6 1.4941 -6.1429 -5.9280 14 6 2.8451 -6.2848 -6.2021 15 6 3.3040 -7.1809 -7.3235 16 8 2.8487 -6.6537 -8.5712 17 14 5.1650 -7.2671 -7.3277 18 1 5.6381 -7.8149 -6.0311 19 1 5.6172 -8.1496 -8.4331 20 1 5.7231 -5.9047 -7.5226 21 6 3.7701 -5.5937 -5.4354 22 7 3.3820 -4.8038 -4.4584 23 6 2.5043 -0.9182 -1.5035 24 1 -0.3633 0.4933 0.9014 25 1 -0.3633 -1.0274 -0.0236 26 1 -0.3633 0.5341 -0.8781 27 1 2.1410 2.2679 0.8899 28 1 3.5897 1.7410 0.0005 29 1 2.1410 2.2679 -0.8900 30 1 3.5623 -0.6975 1.6513 31 1 1.9385 -0.6218 2.3893 32 1 2.7170 -2.9954 2.0603 33 1 1.2475 -2.6337 1.1226 34 1 4.0240 -2.3248 -0.0568 35 1 3.1625 -3.8759 -0.0924 36 1 3.5878 -3.1680 -2.6011 37 1 0.0703 -5.1748 -4.6466 38 1 0.7538 -6.6705 -6.5112 39 1 2.8943 -8.1808 -7.1804 40 1 3.1750 -5.7643 -8.7649 41 1 4.8237 -5.7015 -5.6465 42 1 1.9446 -0.6179 -2.3893 43 1 3.5646 -0.7079 -1.6434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13287726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:06:57 Heat of formation + Delta-G solvation = -30.032070 kcal Electronic energy + Delta-G solvation = -23383.055010 eV Core-core repulsion = 19974.039367 eV Total energy + Delta-G solvation = -3409.015644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93503 -40.62605 -38.61521 -37.83400 -35.03313 -33.87666 -33.04383 -31.53458 -29.33358 -28.34570 -27.87349 -27.51138 -25.19729 -24.95730 -23.50043 -21.95121 -21.83587 -19.51899 -18.73187 -18.33699 -17.47089 -16.93393 -16.78388 -16.37824 -16.21746 -15.69927 -15.52987 -14.97947 -14.91101 -14.77578 -14.53709 -14.30125 -14.23257 -13.98161 -13.79637 -13.59152 -13.50524 -13.18502 -13.11335 -13.00112 -12.55772 -12.17377 -12.08620 -12.05190 -11.97630 -11.59088 -11.08019 -11.05918 -10.79979 -10.67701 -10.54751 -10.38460 -10.29991 -10.16243 -9.76374 -0.62592 0.04450 1.12300 1.36052 1.45349 1.50432 1.55875 1.80590 1.91793 1.92753 2.11616 2.60729 2.64055 2.83634 3.34565 3.41732 3.52049 3.63974 3.77249 3.92375 3.99304 4.09628 4.16278 4.39313 4.46571 4.51614 4.60695 4.66914 4.72778 4.81093 4.81248 4.84637 4.85486 4.85936 4.91922 4.97707 5.09640 5.29963 5.35501 5.47532 5.57807 5.66985 5.78045 6.07977 6.14691 6.56187 6.64656 7.37543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.093 2.907 3 C -0.454 4.454 4 C -0.411 4.411 5 C -0.102 4.102 6 C 0.025 3.975 7 N -0.300 5.300 8 N -0.563 5.563 9 C 0.584 3.416 10 O -0.545 6.545 11 C 0.066 3.934 12 C -0.111 4.111 13 C -0.046 4.046 14 C -0.141 4.141 15 C -0.074 4.074 16 O -0.547 6.547 17 Si 0.973 3.027 18 H -0.253 1.253 19 H -0.270 1.270 20 H -0.246 1.246 21 C 0.089 3.911 22 N -0.465 5.465 23 C -0.275 4.275 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.397 0.603 37 H 0.152 0.848 38 H 0.170 0.830 39 H 0.137 0.863 40 H 0.391 0.609 41 H 0.175 0.825 42 H 0.075 0.925 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 0.130 -0.326 4.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.282 2.718 3 C -0.562 4.562 4 C -0.498 4.498 5 C -0.140 4.140 6 C -0.102 4.102 7 N -0.116 5.116 8 N -0.305 5.305 9 C 0.369 3.631 10 O -0.420 6.420 11 C -0.073 4.073 12 C -0.132 4.132 13 C -0.072 4.072 14 C -0.144 4.144 15 C -0.185 4.185 16 O -0.354 6.354 17 Si 0.797 3.203 18 H -0.177 1.177 19 H -0.195 1.195 20 H -0.170 1.170 21 C -0.071 4.071 22 N -0.176 5.176 23 C -0.446 4.446 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.238 0.762 37 H 0.170 0.830 38 H 0.187 0.813 39 H 0.155 0.845 40 H 0.240 0.760 41 H 0.191 0.809 42 H 0.093 0.907 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.375 -0.019 0.404 4.394 hybrid contribution 0.319 0.116 -0.839 0.905 sum 4.694 0.097 -0.434 4.715 Atomic orbital electron populations 1.26301 1.22598 1.03847 1.04108 0.78307 0.65270 0.64997 0.63258 1.26143 1.06813 1.18265 1.05000 1.26401 1.07098 1.01606 1.14658 1.21206 1.01034 0.96950 0.94826 1.22610 0.96649 1.01360 0.89590 1.63017 1.53775 1.00569 0.94268 1.45349 1.09892 1.48492 1.26816 1.17982 0.84977 0.79082 0.81042 1.90764 1.18679 1.63963 1.68574 1.21011 0.90279 0.98877 0.97126 1.22304 1.01535 0.94927 0.94478 1.21786 0.96349 0.94766 0.94260 1.21787 0.94901 0.98905 0.98764 1.25012 1.12340 0.99193 0.81943 1.86532 1.76036 1.37670 1.35153 0.85328 0.73107 0.81313 0.80599 1.17699 1.19467 1.16951 1.23003 1.00863 0.92237 0.91018 1.67494 1.17087 1.16574 1.16484 1.28381 1.05333 0.92649 1.18220 0.90689 0.92297 0.92033 0.90195 0.90493 0.91241 0.89406 0.89341 0.89884 0.91601 0.91967 0.90753 0.76250 0.83048 0.81292 0.84507 0.75977 0.80872 0.90650 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -0.84 8.65 113.37 0.98 0.14 16 2 Si 1.09 -3.75 11.99 68.60 0.82 -2.92 16 3 C -0.45 1.85 8.65 113.37 0.98 2.83 16 4 C -0.41 1.59 5.04 72.30 0.36 1.95 16 5 C -0.10 0.08 5.74 30.78 0.18 0.25 16 6 C 0.03 0.02 5.38 86.28 0.46 0.49 16 7 N -0.30 -1.53 4.15 -334.14 -1.39 -2.92 16 8 N -0.56 -3.53 4.69 -175.38 -0.82 -4.36 16 9 C 0.58 6.02 7.91 86.88 0.69 6.71 16 10 O -0.54 -9.24 16.65 -3.78 -0.06 -9.30 16 11 C 0.07 0.40 6.75 41.89 0.28 0.69 16 12 C -0.11 -0.34 9.63 22.61 0.22 -0.13 16 13 C -0.05 0.07 9.83 22.45 0.22 0.29 16 14 C -0.14 0.38 5.37 -19.69 -0.11 0.27 16 15 C -0.07 0.42 2.82 71.24 0.20 0.63 16 16 O -0.55 2.23 12.84 -148.98 -1.91 0.32 16 17 Si 0.97 -5.24 25.16 68.60 1.73 -3.51 16 18 H -0.25 1.03 7.11 99.48 0.71 1.74 16 19 H -0.27 0.38 7.11 99.48 0.71 1.08 16 20 H -0.25 1.38 7.04 99.48 0.70 2.08 16 21 C 0.09 -0.05 9.84 84.83 0.83 0.78 16 22 N -0.47 -1.75 9.55 -184.92 -1.77 -3.52 16 23 C -0.28 -0.37 4.86 127.53 0.62 0.25 16 24 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 25 H 0.06 0.35 7.96 -2.39 -0.02 0.33 16 26 H 0.06 0.17 7.96 -2.38 -0.02 0.15 16 27 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 28 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 29 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 30 H 0.09 -0.51 7.99 -2.39 -0.02 -0.53 16 31 H 0.09 -0.42 7.99 -2.39 -0.02 -0.44 16 32 H 0.08 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H 0.07 0.14 7.96 -2.39 -0.02 0.12 16 34 H 0.06 -0.15 7.78 -2.39 -0.02 -0.17 16 35 H 0.07 0.15 8.03 -2.39 -0.02 0.13 16 36 H 0.40 1.16 8.16 -215.50 -1.76 -0.60 16 37 H 0.15 0.47 7.64 -2.91 -0.02 0.44 16 38 H 0.17 -0.97 8.06 -2.91 -0.02 -0.99 16 39 H 0.14 -1.10 7.96 -2.39 -0.02 -1.12 16 40 H 0.39 -3.95 8.70 -74.06 -0.64 -4.59 16 41 H 0.17 -0.82 4.88 -2.91 -0.01 -0.84 16 42 H 0.07 0.32 7.99 -2.39 -0.02 0.30 16 43 H 0.07 -0.10 7.92 -2.39 -0.02 -0.12 16 Total: 0.00 -17.26 353.75 1.89 -15.37 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: -0.63 Total: -4.33 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 5.92 Total: 15.17 kcal Atomic # 7 Polarization: -6.82 SS G_CDS: -3.98 Total: -10.79 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -1.98 Total: -8.98 kcal Atomic # 14 Polarization: -8.99 SS G_CDS: 2.55 Total: -6.44 kcal Total: -17.26 1.89 -15.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.661 kcal (2) G-P(sol) polarization free energy of solvation -17.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds