Wall clock time and date at job start Sun Mar 7 2021 09:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34656 * 124.84927 * 2 1 4 4 C 1.36770 * 108.39754 * 180.02562 * 3 2 1 5 5 C 1.47266 * 126.94283 * 179.97438 * 4 3 2 6 6 O 1.21628 * 119.99655 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99921 * 0.02562 * 5 4 3 8 8 N 1.36599 * 119.99494 * 174.98422 * 7 5 4 9 9 C 1.46358 * 110.99609 * 111.10571 * 8 7 5 10 10 C 1.52618 * 111.89235 * 203.19199 * 9 8 7 11 11 C 1.53929 * 109.31407 * 283.48129 * 10 9 8 12 12 Si 1.87522 * 106.85158 * 57.20079 * 11 10 9 13 13 C 1.86299 * 110.00280 * 196.90468 * 12 11 10 14 14 C 1.86297 * 110.00210 * 75.50287 * 12 11 10 15 15 C 1.47721 * 110.99809 * 235.45058 * 8 7 5 16 16 C 1.46687 * 106.11176 * 0.26202 * 4 3 2 17 17 C 1.34489 * 106.33615 * 359.56507 * 16 4 3 18 18 C 1.50691 * 125.57415 * 180.14434 * 17 16 4 19 19 O 1.42900 * 109.47054 * 150.34110 * 18 17 16 20 20 Si 1.86301 * 109.46995 * 30.34106 * 18 17 16 21 21 H 1.48499 * 109.47182 * 179.97438 * 20 18 17 22 22 H 1.48496 * 109.47191 * 299.99966 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00020 * 20 18 17 24 24 H 1.09006 * 109.47366 * 89.97900 * 1 2 3 25 25 H 1.09004 * 109.47149 * 209.97731 * 1 2 3 26 26 H 1.09003 * 109.47377 * 329.97400 * 1 2 3 27 27 H 1.08006 * 125.80289 * 359.97438 * 3 2 1 28 28 H 0.97001 * 119.99806 * 354.71610 * 7 5 4 29 29 H 1.08997 * 108.99897 * 323.81806 * 9 8 7 30 30 H 1.09004 * 108.99697 * 82.57237 * 9 8 7 31 31 H 1.09003 * 109.50348 * 163.52787 * 10 9 8 32 32 H 1.09002 * 109.52387 * 43.44728 * 10 9 8 33 33 H 1.09004 * 109.97108 * 297.86550 * 11 10 9 34 34 H 1.08999 * 110.05685 * 176.58295 * 11 10 9 35 35 H 1.08999 * 109.47031 * 177.27022 * 13 12 11 36 36 H 1.08997 * 109.46842 * 297.27111 * 13 12 11 37 37 H 1.09000 * 109.46751 * 57.27515 * 13 12 11 38 38 H 1.09001 * 109.47473 * 302.73003 * 14 12 11 39 39 H 1.09002 * 109.47244 * 62.72819 * 14 12 11 40 40 H 1.08996 * 109.47360 * 182.73097 * 14 12 11 41 41 H 1.08995 * 109.95142 * 294.88936 * 15 8 7 42 42 H 1.08997 * 109.95072 * 56.06190 * 15 8 7 43 43 H 1.08006 * 126.82925 * 179.74153 * 16 4 3 44 44 H 1.09000 * 109.47319 * 270.34147 * 18 17 16 45 45 H 0.96698 * 113.99920 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2344 1.1051 0.0000 4 6 3.5461 0.7177 -0.0006 5 6 4.7283 1.5959 -0.0013 6 8 5.8446 1.1129 -0.0023 7 7 4.5733 2.9347 -0.0009 8 7 5.6655 3.7486 0.1018 9 6 5.9021 4.4693 -1.1499 10 6 7.3546 4.9185 -1.2821 11 6 7.5914 6.1466 -0.3848 12 14 7.1317 5.6408 1.3614 13 6 6.8902 7.1543 2.4206 14 6 8.4666 4.5611 2.0844 15 6 5.5261 4.6805 1.2395 16 6 3.5374 -0.7491 -0.0074 17 6 2.2447 -1.1198 -0.0005 18 6 1.7397 -2.5396 -0.0007 19 8 0.4811 -2.5976 0.6734 20 14 2.9652 -3.6346 0.8768 21 1 2.4674 -5.0336 0.8771 22 1 4.2732 -3.5743 0.1763 23 1 3.1316 -3.1685 2.2769 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 1.8766 2.1241 -0.0004 28 1 3.6865 3.3202 -0.0776 29 1 5.6549 3.8167 -1.9872 30 1 5.2552 5.3460 -1.1823 31 1 7.5615 5.1807 -2.3197 32 1 8.0159 4.1090 -0.9727 33 1 6.9605 6.9734 -0.7113 34 1 8.6401 6.4411 -0.4233 35 1 6.5764 6.8522 3.4197 36 1 7.8282 7.7056 2.4855 37 1 6.1247 7.7903 1.9761 38 1 8.6167 3.6913 1.4448 39 1 9.3956 5.1274 2.1513 40 1 8.1688 4.2327 3.0801 41 1 4.6965 5.3644 1.0606 42 1 5.3550 4.1213 2.1594 43 1 4.3981 -1.4016 -0.0135 44 1 1.6176 -2.8816 -1.0284 45 1 0.0960 -3.4837 0.7118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13287730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:07:08 Heat of formation + Delta-G solvation = -19.982407 kcal Electronic energy + Delta-G solvation = -24147.183446 eV Core-core repulsion = 20711.292110 eV Total energy + Delta-G solvation = -3435.891336 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34853 -40.40948 -38.12300 -37.78729 -34.74986 -33.70959 -32.14693 -30.79497 -29.36192 -28.35914 -27.64924 -27.43105 -26.28242 -24.79248 -23.15224 -21.73724 -20.97126 -20.26455 -18.82597 -18.53230 -17.81539 -16.85234 -16.72543 -16.49020 -15.88438 -15.46370 -15.30090 -15.18005 -14.89313 -14.71601 -14.47880 -14.18675 -14.02626 -13.94989 -13.79463 -13.51731 -13.38774 -13.30899 -13.21769 -13.10109 -13.05301 -12.89906 -12.61715 -12.04216 -11.98604 -11.94320 -11.85309 -11.16438 -10.82036 -10.72982 -10.49581 -10.31453 -10.00054 -9.55025 -9.45008 -9.10436 0.85117 0.99621 1.42491 1.46663 1.49062 1.60098 1.81429 1.87216 1.94020 2.05833 2.24051 2.59762 2.86006 3.02030 3.53148 3.66560 3.87276 3.89759 4.05364 4.17440 4.26149 4.28095 4.36772 4.43600 4.54231 4.59843 4.68601 4.69556 4.70228 4.76066 4.80805 4.86938 4.93659 4.98829 5.01837 5.06838 5.12673 5.31807 5.44247 5.46478 5.74683 5.76179 5.90482 6.07318 6.21398 6.36535 6.56448 6.75840 7.88834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.420 5.420 3 C 0.047 3.953 4 C -0.221 4.221 5 C 0.606 3.394 6 O -0.518 6.518 7 N -0.588 5.588 8 N -0.274 5.274 9 C 0.026 3.974 10 C -0.100 4.100 11 C -0.410 4.410 12 Si 1.032 2.968 13 C -0.450 4.450 14 C -0.443 4.443 15 C -0.259 4.259 16 C -0.143 4.143 17 C 0.025 3.975 18 C -0.055 4.055 19 O -0.551 6.551 20 Si 0.964 3.036 21 H -0.254 1.254 22 H -0.244 1.244 23 H -0.246 1.246 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.169 0.831 28 H 0.374 0.626 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.154 0.846 44 H 0.081 0.919 45 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.730 1.171 -0.604 5.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.094 5.094 3 C -0.089 4.089 4 C -0.233 4.233 5 C 0.395 3.605 6 O -0.391 6.391 7 N -0.333 5.333 8 N -0.089 5.089 9 C -0.102 4.102 10 C -0.139 4.139 11 C -0.496 4.496 12 Si 1.224 2.776 13 C -0.558 4.558 14 C -0.552 4.552 15 C -0.432 4.432 16 C -0.167 4.167 17 C -0.084 4.084 18 C -0.165 4.165 19 O -0.358 6.358 20 Si 0.784 3.216 21 H -0.178 1.178 22 H -0.167 1.167 23 H -0.169 1.169 24 H 0.089 0.911 25 H 0.136 0.864 26 H 0.098 0.902 27 H 0.186 0.814 28 H 0.212 0.788 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.171 0.829 44 H 0.099 0.901 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.245 0.545 -0.024 4.280 hybrid contribution -1.894 0.707 -0.593 2.107 sum -6.139 1.252 -0.617 6.295 Atomic orbital electron populations 1.22497 0.76184 1.06074 1.03668 1.43437 1.07144 1.04790 1.54065 1.21903 0.90145 0.91760 1.05106 1.20205 0.91330 0.93662 1.18071 1.17179 0.88063 0.79808 0.75478 1.90764 1.25705 1.74460 1.48188 1.45458 1.05109 1.04937 1.77783 1.62923 1.23384 1.19434 1.03196 1.22585 0.98224 0.97258 0.92160 1.21179 0.94939 0.97562 1.00229 1.26377 1.05618 1.00869 1.16711 0.79205 0.65482 0.65545 0.67325 1.26119 1.04969 1.14937 1.09786 1.26027 1.11970 1.10247 1.06933 1.28056 1.16810 1.02016 0.96304 1.21629 0.94673 0.93314 1.07060 1.19627 0.90058 0.87072 1.11676 1.24424 0.93547 0.97124 1.01412 1.86315 1.34999 1.35128 1.79408 0.85492 0.78164 0.76816 0.81131 1.17820 1.16697 1.16859 0.91066 0.86433 0.90245 0.81397 0.78827 0.90257 0.94033 0.90998 0.90175 0.90801 0.90162 0.91083 0.90737 0.91262 0.90268 0.91405 0.91375 0.92989 0.89040 0.82887 0.90120 0.76642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.11 10.71 59.85 0.64 0.53 16 2 N -0.42 -0.37 3.09 -119.89 -0.37 -0.74 16 3 C 0.05 0.03 10.83 -16.84 -0.18 -0.15 16 4 C -0.22 -0.80 6.29 -103.35 -0.65 -1.45 16 5 C 0.61 3.22 7.91 -12.59 -0.10 3.12 16 6 O -0.52 -4.90 17.30 5.25 0.09 -4.81 16 7 N -0.59 -1.38 4.69 30.40 0.14 -1.24 16 8 N -0.27 -0.65 4.15 -56.97 -0.24 -0.88 16 9 C 0.03 0.03 5.38 -4.31 -0.02 0.00 16 10 C -0.10 -0.05 5.74 -26.44 -0.15 -0.20 16 11 C -0.41 0.39 5.04 37.64 0.19 0.58 16 12 Si 1.03 -1.53 11.99 -169.99 -2.04 -3.57 16 13 C -0.45 0.66 8.65 101.05 0.87 1.53 16 14 C -0.44 -0.25 8.65 101.05 0.87 0.62 16 15 C -0.26 -0.04 4.85 60.52 0.29 0.25 16 16 C -0.14 -0.53 9.50 -37.50 -0.36 -0.88 16 17 C 0.02 0.05 6.16 -81.87 -0.50 -0.46 16 18 C -0.06 0.05 2.97 36.00 0.11 0.16 16 19 O -0.55 1.12 9.69 -35.23 -0.34 0.78 16 20 Si 0.96 -0.41 26.57 -169.99 -4.52 -4.92 16 21 H -0.25 0.23 7.11 56.52 0.40 0.64 16 22 H -0.24 -0.18 6.81 56.52 0.38 0.20 16 23 H -0.25 -0.45 7.11 56.52 0.40 -0.05 16 24 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 25 H 0.12 -0.19 5.13 -51.93 -0.27 -0.46 16 26 H 0.08 -0.27 8.13 -51.93 -0.42 -0.70 16 27 H 0.17 -0.48 7.46 -52.48 -0.39 -0.87 16 28 H 0.37 -0.23 7.79 -185.16 -1.44 -1.67 16 29 H 0.08 0.14 8.03 -51.93 -0.42 -0.27 16 30 H 0.04 -0.02 7.78 -51.93 -0.40 -0.42 16 31 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.08 0.13 7.96 -51.93 -0.41 -0.28 16 33 H 0.07 -0.11 7.99 -51.93 -0.42 -0.52 16 34 H 0.08 -0.10 7.99 -51.93 -0.42 -0.51 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 38 H 0.08 0.17 7.96 -51.93 -0.41 -0.24 16 39 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 40 H 0.07 0.05 7.96 -51.93 -0.41 -0.37 16 41 H 0.05 -0.06 7.92 -51.93 -0.41 -0.47 16 42 H 0.09 0.07 7.99 -51.93 -0.42 -0.34 16 43 H 0.15 0.55 6.71 -52.48 -0.35 0.20 16 44 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 45 H 0.38 -2.40 8.74 45.56 0.40 -2.01 16 LS Contribution 362.84 15.07 5.47 5.47 Total: 0.00 -9.34 362.84 -8.71 -18.05 By element: Atomic # 1 Polarization: -3.89 SS G_CDS: -7.92 Total: -11.81 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 1.01 Total: 3.67 kcal Atomic # 7 Polarization: -2.40 SS G_CDS: -0.46 Total: -2.86 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.25 Total: -4.03 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: -6.55 Total: -8.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -9.34 -8.71 -18.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.931 kcal (2) G-P(sol) polarization free energy of solvation -9.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds