Wall clock time and date at job start Sun Mar 7 2021 09:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37676 * 119.95766 * 2 1 4 4 C 1.39760 * 119.91015 * 180.02562 * 3 2 1 5 5 C 1.47600 * 120.08378 * 180.02562 * 4 3 2 6 6 O 1.21587 * 119.99727 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00695 * 0.02562 * 5 4 3 8 8 N 1.36597 * 120.00514 * 174.97158 * 7 5 4 9 9 C 1.46352 * 110.99888 * 111.11887 * 8 7 5 10 10 C 1.52625 * 111.89301 * 203.19785 * 9 8 7 11 11 C 1.53930 * 109.30929 * 283.48182 * 10 9 8 12 12 Si 1.87525 * 106.84984 * 57.20359 * 11 10 9 13 13 C 1.86303 * 110.00033 * 196.89952 * 12 11 10 14 14 C 1.86300 * 110.00459 * 75.50312 * 12 11 10 15 15 C 1.47724 * 111.00062 * 235.47316 * 8 7 5 16 16 C 1.39708 * 119.82442 * 359.74701 * 4 3 2 17 17 C 1.37723 * 119.91081 * 0.50020 * 16 4 3 18 18 C 1.50699 * 119.95713 * 179.75203 * 17 16 4 19 19 O 1.42902 * 109.47106 * 104.72621 * 18 17 16 20 20 Si 1.86306 * 109.47274 * 344.72737 * 18 17 16 21 21 H 1.48509 * 109.46837 * 59.99637 * 20 18 17 22 22 H 1.48499 * 109.47306 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46932 * 300.00390 * 20 18 17 24 24 C 1.38979 * 120.08968 * 359.48261 * 17 16 4 25 25 O 1.35704 * 119.91370 * 180.27264 * 24 17 16 26 26 H 1.09002 * 109.47256 * 270.02395 * 1 2 3 27 27 H 1.09003 * 109.47110 * 30.02063 * 1 2 3 28 28 H 1.08995 * 109.47610 * 150.02132 * 1 2 3 29 29 H 1.07997 * 120.04430 * 359.97431 * 3 2 1 30 30 H 0.97006 * 119.99286 * 354.97397 * 7 5 4 31 31 H 1.08995 * 108.99930 * 323.81842 * 9 8 7 32 32 H 1.09005 * 108.99570 * 82.57876 * 9 8 7 33 33 H 1.08998 * 109.50051 * 163.53190 * 10 9 8 34 34 H 1.09005 * 109.52274 * 43.44531 * 10 9 8 35 35 H 1.09000 * 109.98055 * 297.86684 * 11 10 9 36 36 H 1.09005 * 110.05080 * 176.57847 * 11 10 9 37 37 H 1.09003 * 109.46891 * 177.26922 * 13 12 11 38 38 H 1.08996 * 109.47292 * 297.27440 * 13 12 11 39 39 H 1.09002 * 109.47251 * 57.27351 * 13 12 11 40 40 H 1.08998 * 109.46778 * 302.72645 * 14 12 11 41 41 H 1.09003 * 109.47317 * 62.72533 * 14 12 11 42 42 H 1.08995 * 109.47192 * 182.72887 * 14 12 11 43 43 H 1.08996 * 109.94345 * 294.88652 * 15 8 7 44 44 H 1.09000 * 109.95050 * 56.13922 * 15 8 7 45 45 H 1.08002 * 120.04757 * 180.25595 * 16 4 3 46 46 H 1.09001 * 109.47267 * 224.72846 * 18 17 16 47 47 H 0.96709 * 113.99713 * 179.97438 * 19 18 17 48 48 H 0.96701 * 113.99956 * 89.99844 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1928 0.0000 4 6 3.5920 1.1917 -0.0005 5 6 4.3330 2.4682 0.0000 6 8 5.5488 2.4654 0.0000 7 7 3.6619 3.6370 0.0016 8 7 4.3438 4.8161 0.1058 9 6 4.2765 5.5731 -1.1449 10 6 5.4336 6.5597 -1.2759 11 6 5.1661 7.7803 -0.3770 12 14 4.9436 7.1317 1.3684 13 6 4.1241 8.4254 2.4293 14 6 6.5965 6.6661 2.0908 15 6 3.8478 5.6156 1.2446 16 6 4.2859 -0.0209 0.0043 17 6 3.5908 -1.2099 -0.0009 18 6 4.3382 -2.5185 -0.0014 19 8 4.2725 -3.1050 1.3001 20 14 6.1192 -2.2164 -0.4572 21 1 6.7340 -1.2954 0.5324 22 1 6.8558 -3.5058 -0.4571 23 1 6.1874 -1.6068 -1.8096 24 6 2.2010 -1.2046 0.0000 25 8 1.5198 -2.3782 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6545 2.1281 -0.0004 30 1 2.6946 3.6409 -0.0713 31 1 4.3072 4.8771 -1.9831 32 1 3.3360 6.1232 -1.1765 33 1 5.5200 6.8836 -2.3130 34 1 6.3608 6.0768 -0.9671 35 1 4.2600 8.2912 -0.7027 36 1 6.0133 8.4651 -0.4146 37 1 3.9551 8.0226 3.4280 38 1 4.7680 9.3024 2.4954 39 1 3.1696 8.7081 1.9854 40 1 7.0778 5.9272 1.4501 41 1 7.2262 7.5532 2.1588 42 1 6.4526 6.2455 3.0859 43 1 2.8155 5.9164 1.0661 44 1 3.9129 5.0336 2.1640 45 1 5.3659 -0.0260 0.0080 46 1 3.8869 -3.1944 -0.7277 47 1 4.7332 -3.9522 1.3734 48 1 1.3229 -2.7183 0.8840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13287732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:07:18 Heat of formation + Delta-G solvation = -89.578940 kcal Electronic energy + Delta-G solvation = -27802.685982 eV Core-core repulsion = 23982.294292 eV Total energy + Delta-G solvation = -3820.391690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64606 -40.55562 -38.54602 -37.76688 -37.35913 -34.97421 -34.09791 -32.53181 -30.85290 -29.42205 -28.42122 -28.06828 -27.60929 -26.84486 -25.52089 -23.81785 -22.07244 -21.78239 -21.35183 -19.49420 -18.90566 -18.51481 -18.16641 -17.25506 -16.69638 -16.62408 -16.08161 -15.65610 -15.41556 -15.34041 -15.00499 -14.87631 -14.78331 -14.45925 -14.33023 -14.26089 -14.09722 -13.85799 -13.72174 -13.59589 -13.49185 -13.28630 -13.16353 -13.07531 -12.99559 -12.87415 -12.54873 -12.08438 -12.07497 -12.02543 -11.73506 -11.48000 -11.30197 -10.89004 -10.69345 -10.43144 -10.35086 -10.19893 -9.95020 -9.69790 -9.59170 -0.32624 0.10299 1.14917 1.35143 1.47202 1.54573 1.71435 1.78396 1.79955 1.96778 2.05782 2.52042 2.65157 3.12653 3.26076 3.33717 3.59849 3.67021 3.77909 3.95309 3.98897 4.11636 4.19678 4.31008 4.33896 4.42793 4.50777 4.56158 4.60771 4.63376 4.64399 4.64827 4.68531 4.70605 4.78665 4.86144 4.91815 5.01947 5.03904 5.11790 5.12565 5.24686 5.30040 5.37333 5.41085 5.54895 5.67835 5.77086 6.31125 6.43965 6.52023 6.59382 7.56985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.117 4.117 3 C -0.067 4.067 4 C -0.134 4.134 5 C 0.576 3.424 6 O -0.507 6.507 7 N -0.583 5.583 8 N -0.275 5.275 9 C 0.025 3.975 10 C -0.100 4.100 11 C -0.410 4.410 12 Si 1.033 2.967 13 C -0.450 4.450 14 C -0.444 4.444 15 C -0.260 4.260 16 C -0.052 4.052 17 C -0.105 4.105 18 C -0.074 4.074 19 O -0.546 6.546 20 Si 0.935 3.065 21 H -0.242 1.242 22 H -0.252 1.252 23 H -0.245 1.245 24 C 0.162 3.838 25 O -0.489 6.489 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.377 0.623 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.092 0.908 45 H 0.142 0.858 46 H 0.083 0.917 47 H 0.383 0.617 48 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 0.809 0.591 4.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.118 4.118 3 C -0.086 4.086 4 C -0.138 4.138 5 C 0.363 3.637 6 O -0.381 6.381 7 N -0.328 5.328 8 N -0.091 5.091 9 C -0.103 4.103 10 C -0.139 4.139 11 C -0.496 4.496 12 Si 1.226 2.774 13 C -0.558 4.558 14 C -0.552 4.552 15 C -0.433 4.433 16 C -0.071 4.071 17 C -0.105 4.105 18 C -0.184 4.184 19 O -0.352 6.352 20 Si 0.757 3.243 21 H -0.165 1.165 22 H -0.176 1.176 23 H -0.169 1.169 24 C 0.116 3.884 25 O -0.301 6.301 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.148 0.852 30 H 0.217 0.783 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.160 0.840 46 H 0.101 0.899 47 H 0.230 0.770 48 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.342 1.376 -0.031 2.717 hybrid contribution -1.726 -0.418 0.310 1.803 sum -4.069 0.958 0.279 4.189 Atomic orbital electron populations 1.20725 0.89715 1.03751 1.02813 1.20168 0.97264 0.92007 1.02352 1.21087 0.92544 0.97768 0.97230 1.19740 0.93414 0.93109 1.07530 1.17930 0.87268 0.82123 0.76340 1.90790 1.13092 1.86924 1.47274 1.45490 1.07885 1.02638 1.76777 1.62970 1.46007 0.96629 1.03488 1.22601 0.99002 0.96776 0.91921 1.21182 0.98358 0.94006 1.00352 1.26382 1.04865 1.01744 1.16633 0.79192 0.66871 0.63988 0.67370 1.26118 1.07632 1.12277 1.09798 1.26032 1.16681 1.05583 1.06926 1.28085 1.07279 1.11870 0.96096 1.21065 1.00854 0.90195 0.94966 1.19502 0.93159 0.93856 1.04022 1.24581 1.10353 0.94359 0.89135 1.86446 1.79308 1.40649 1.28832 0.85903 0.75113 0.81512 0.81811 1.16526 1.17624 1.16855 1.18244 0.88695 0.85300 0.96118 1.84638 1.75643 1.35719 1.34060 0.90855 0.91155 0.90359 0.85185 0.78313 0.90196 0.93788 0.90875 0.90175 0.90718 0.90078 0.91050 0.90680 0.91213 0.90324 0.91324 0.91350 0.92735 0.88936 0.84037 0.89925 0.76978 0.74247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.20 9.78 36.00 0.35 0.55 16 2 C -0.12 -0.03 5.89 -104.54 -0.62 -0.65 16 3 C -0.07 -0.01 9.17 -39.22 -0.36 -0.37 16 4 C -0.13 -0.33 5.87 -104.96 -0.62 -0.95 16 5 C 0.58 2.33 7.87 -12.44 -0.10 2.23 16 6 O -0.51 -4.00 16.67 5.29 0.09 -3.91 16 7 N -0.58 -0.82 4.65 30.47 0.14 -0.67 16 8 N -0.28 -0.41 4.15 -56.97 -0.24 -0.65 16 9 C 0.02 0.01 5.38 -4.31 -0.02 -0.02 16 10 C -0.10 0.02 5.74 -26.44 -0.15 -0.13 16 11 C -0.41 0.63 5.04 37.64 0.19 0.82 16 12 Si 1.03 -2.18 11.99 -169.99 -2.04 -4.22 16 13 C -0.45 0.89 8.65 101.05 0.87 1.76 16 14 C -0.44 0.02 8.65 101.05 0.87 0.89 16 15 C -0.26 0.16 4.85 60.52 0.29 0.46 16 16 C -0.05 -0.17 8.20 -39.22 -0.32 -0.49 16 17 C -0.10 -0.22 5.30 -104.54 -0.55 -0.78 16 18 C -0.07 -0.04 2.36 36.01 0.09 0.05 16 19 O -0.55 0.02 12.86 -35.23 -0.45 -0.43 16 20 Si 0.93 0.91 25.50 -169.99 -4.33 -3.42 16 21 H -0.24 -0.67 6.72 56.52 0.38 -0.29 16 22 H -0.25 -0.14 7.11 56.52 0.40 0.27 16 23 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 24 C 0.16 0.22 6.66 -39.02 -0.26 -0.04 16 25 O -0.49 -0.07 11.84 -18.82 -0.22 -0.29 16 26 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 27 H 0.07 -0.19 8.08 -51.93 -0.42 -0.61 16 28 H 0.08 -0.10 7.52 -51.93 -0.39 -0.49 16 29 H 0.13 -0.36 6.41 -52.49 -0.34 -0.69 16 30 H 0.38 -0.54 6.87 -185.15 -1.27 -1.81 16 31 H 0.08 0.08 8.03 -51.93 -0.42 -0.34 16 32 H 0.04 -0.05 7.78 -51.93 -0.40 -0.45 16 33 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 34 H 0.08 0.07 7.96 -51.93 -0.41 -0.34 16 35 H 0.07 -0.15 7.99 -51.93 -0.42 -0.57 16 36 H 0.08 -0.14 7.99 -51.93 -0.42 -0.56 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 39 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 40 H 0.08 0.12 7.96 -51.93 -0.41 -0.29 16 41 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 42 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 43 H 0.05 -0.11 7.92 -51.93 -0.41 -0.52 16 44 H 0.09 -0.01 7.99 -51.93 -0.41 -0.42 16 45 H 0.14 0.55 4.46 -52.49 -0.23 0.31 16 46 H 0.08 -0.05 7.82 -51.93 -0.41 -0.46 16 47 H 0.38 -1.61 8.74 45.56 0.40 -1.22 16 48 H 0.40 -1.28 9.06 45.56 0.41 -0.87 16 LS Contribution 386.72 15.07 5.83 5.83 Total: 0.00 -8.66 386.72 -8.84 -17.50 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: -7.28 Total: -13.07 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.33 Total: 3.34 kcal Atomic # 7 Polarization: -1.23 SS G_CDS: -0.09 Total: -1.32 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.59 Total: -4.63 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: -6.37 Total: -7.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -8.66 -8.84 -17.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.079 kcal (2) G-P(sol) polarization free energy of solvation -8.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds