Wall clock time and date at job start Sun Mar 7 2021 09:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37676 * 119.95766 * 2 1 4 4 C 1.39760 * 119.91015 * 180.02562 * 3 2 1 5 5 C 1.47600 * 120.08378 * 180.02562 * 4 3 2 6 6 O 1.21587 * 119.99727 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00695 * 0.02562 * 5 4 3 8 8 N 1.36597 * 120.00514 * 174.97158 * 7 5 4 9 9 C 1.46352 * 110.99888 * 111.11887 * 8 7 5 10 10 C 1.52625 * 111.89301 * 203.19785 * 9 8 7 11 11 C 1.53930 * 109.30929 * 283.48182 * 10 9 8 12 12 Si 1.87525 * 106.84984 * 57.20359 * 11 10 9 13 13 C 1.86303 * 110.00033 * 196.89952 * 12 11 10 14 14 C 1.86300 * 110.00459 * 75.50312 * 12 11 10 15 15 C 1.47724 * 111.00062 * 235.47316 * 8 7 5 16 16 C 1.39708 * 119.82442 * 359.74701 * 4 3 2 17 17 C 1.37723 * 119.91081 * 0.50020 * 16 4 3 18 18 C 1.50699 * 119.95713 * 179.75203 * 17 16 4 19 19 O 1.42902 * 109.47106 * 104.72621 * 18 17 16 20 20 Si 1.86306 * 109.47274 * 344.72737 * 18 17 16 21 21 H 1.48509 * 109.46837 * 59.99637 * 20 18 17 22 22 H 1.48499 * 109.47306 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46932 * 300.00390 * 20 18 17 24 24 C 1.38979 * 120.08968 * 359.48261 * 17 16 4 25 25 O 1.35704 * 119.91370 * 180.27264 * 24 17 16 26 26 H 1.09002 * 109.47256 * 270.02395 * 1 2 3 27 27 H 1.09003 * 109.47110 * 30.02063 * 1 2 3 28 28 H 1.08995 * 109.47610 * 150.02132 * 1 2 3 29 29 H 1.07997 * 120.04430 * 359.97431 * 3 2 1 30 30 H 0.97006 * 119.99286 * 354.97397 * 7 5 4 31 31 H 1.08995 * 108.99930 * 323.81842 * 9 8 7 32 32 H 1.09005 * 108.99570 * 82.57876 * 9 8 7 33 33 H 1.08998 * 109.50051 * 163.53190 * 10 9 8 34 34 H 1.09005 * 109.52274 * 43.44531 * 10 9 8 35 35 H 1.09000 * 109.98055 * 297.86684 * 11 10 9 36 36 H 1.09005 * 110.05080 * 176.57847 * 11 10 9 37 37 H 1.09003 * 109.46891 * 177.26922 * 13 12 11 38 38 H 1.08996 * 109.47292 * 297.27440 * 13 12 11 39 39 H 1.09002 * 109.47251 * 57.27351 * 13 12 11 40 40 H 1.08998 * 109.46778 * 302.72645 * 14 12 11 41 41 H 1.09003 * 109.47317 * 62.72533 * 14 12 11 42 42 H 1.08995 * 109.47192 * 182.72887 * 14 12 11 43 43 H 1.08996 * 109.94345 * 294.88652 * 15 8 7 44 44 H 1.09000 * 109.95050 * 56.13922 * 15 8 7 45 45 H 1.08002 * 120.04757 * 180.25595 * 16 4 3 46 46 H 1.09001 * 109.47267 * 224.72846 * 18 17 16 47 47 H 0.96709 * 113.99713 * 179.97438 * 19 18 17 48 48 H 0.96701 * 113.99956 * 89.99844 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1928 0.0000 4 6 3.5920 1.1917 -0.0005 5 6 4.3330 2.4682 0.0000 6 8 5.5488 2.4654 0.0000 7 7 3.6619 3.6370 0.0016 8 7 4.3438 4.8161 0.1058 9 6 4.2765 5.5731 -1.1449 10 6 5.4336 6.5597 -1.2759 11 6 5.1661 7.7803 -0.3770 12 14 4.9436 7.1317 1.3684 13 6 4.1241 8.4254 2.4293 14 6 6.5965 6.6661 2.0908 15 6 3.8478 5.6156 1.2446 16 6 4.2859 -0.0209 0.0043 17 6 3.5908 -1.2099 -0.0009 18 6 4.3382 -2.5185 -0.0014 19 8 4.2725 -3.1050 1.3001 20 14 6.1192 -2.2164 -0.4572 21 1 6.7340 -1.2954 0.5324 22 1 6.8558 -3.5058 -0.4571 23 1 6.1874 -1.6068 -1.8096 24 6 2.2010 -1.2046 0.0000 25 8 1.5198 -2.3782 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6545 2.1281 -0.0004 30 1 2.6946 3.6409 -0.0713 31 1 4.3072 4.8771 -1.9831 32 1 3.3360 6.1232 -1.1765 33 1 5.5200 6.8836 -2.3130 34 1 6.3608 6.0768 -0.9671 35 1 4.2600 8.2912 -0.7027 36 1 6.0133 8.4651 -0.4146 37 1 3.9551 8.0226 3.4280 38 1 4.7680 9.3024 2.4954 39 1 3.1696 8.7081 1.9854 40 1 7.0778 5.9272 1.4501 41 1 7.2262 7.5532 2.1588 42 1 6.4526 6.2455 3.0859 43 1 2.8155 5.9164 1.0661 44 1 3.9129 5.0336 2.1640 45 1 5.3659 -0.0260 0.0080 46 1 3.8869 -3.1944 -0.7277 47 1 4.7332 -3.9522 1.3734 48 1 1.3229 -2.7183 0.8840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13287732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:07:17 Heat of formation + Delta-G solvation = -88.439202 kcal Electronic energy + Delta-G solvation = -27802.636559 eV Core-core repulsion = 23982.294292 eV Total energy + Delta-G solvation = -3820.342267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.76424 -40.67085 -38.67397 -37.76175 -37.45745 -35.05154 -34.10919 -32.61491 -30.89811 -29.32487 -28.35331 -28.01558 -27.55240 -26.88808 -25.58922 -23.87247 -22.09422 -21.78716 -21.53364 -19.51625 -19.00827 -18.52068 -18.29397 -17.31065 -16.77889 -16.65711 -16.22453 -15.78415 -15.54293 -15.38255 -15.06297 -14.93483 -14.75906 -14.40357 -14.35099 -14.21462 -13.97582 -13.80864 -13.72023 -13.51739 -13.48603 -13.18997 -13.13184 -13.04946 -12.96706 -12.85608 -12.60034 -12.24971 -12.04549 -11.98370 -11.90453 -11.49970 -11.42180 -10.84304 -10.80738 -10.45974 -10.37928 -10.24632 -10.00362 -9.74076 -9.62767 -0.43430 0.02971 1.06612 1.33376 1.37078 1.38554 1.60779 1.82014 1.84142 1.90268 2.14395 2.51245 2.61432 3.12653 3.25228 3.31111 3.57523 3.63275 3.79330 3.94709 4.00062 4.12247 4.17544 4.35234 4.40003 4.43739 4.51991 4.61187 4.66800 4.70213 4.73141 4.79962 4.81026 4.81606 4.85108 4.86451 4.91531 5.01060 5.04997 5.09396 5.18396 5.29276 5.29593 5.47193 5.56661 5.58984 5.65901 5.79708 6.14366 6.32233 6.71555 6.75352 7.41860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 C -0.056 4.056 4 C -0.148 4.148 5 C 0.573 3.427 6 O -0.561 6.561 7 N -0.570 5.570 8 N -0.303 5.303 9 C 0.025 3.975 10 C -0.103 4.103 11 C -0.414 4.414 12 Si 1.096 2.904 13 C -0.452 4.452 14 C -0.467 4.467 15 C -0.272 4.272 16 C -0.074 4.074 17 C -0.119 4.119 18 C -0.060 4.060 19 O -0.555 6.555 20 Si 0.955 3.045 21 H -0.279 1.279 22 H -0.239 1.239 23 H -0.268 1.268 24 C 0.161 3.839 25 O -0.492 6.492 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.394 0.606 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.401 0.599 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 1.361 0.742 7.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C -0.075 4.075 4 C -0.152 4.152 5 C 0.361 3.639 6 O -0.438 6.438 7 N -0.315 5.315 8 N -0.119 5.119 9 C -0.102 4.102 10 C -0.142 4.142 11 C -0.500 4.500 12 Si 1.284 2.716 13 C -0.561 4.561 14 C -0.573 4.573 15 C -0.443 4.443 16 C -0.093 4.093 17 C -0.120 4.120 18 C -0.172 4.172 19 O -0.365 6.365 20 Si 0.781 3.219 21 H -0.204 1.204 22 H -0.162 1.162 23 H -0.193 1.193 24 C 0.115 3.885 25 O -0.306 6.306 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.178 0.822 30 H 0.236 0.764 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.140 0.860 46 H 0.117 0.883 47 H 0.251 0.749 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -5.207 1.888 0.134 5.541 hybrid contribution -0.807 -0.600 0.290 1.046 sum -6.014 1.289 0.424 6.165 Atomic orbital electron populations 1.20771 0.87808 1.04342 1.03751 1.20459 0.98538 0.91507 1.01328 1.21340 0.91312 0.99205 0.95644 1.19717 0.94535 0.92035 1.08953 1.18270 0.86815 0.83259 0.75506 1.90757 1.15292 1.87688 1.50106 1.45340 1.08561 1.02205 1.75348 1.62958 1.47333 0.96942 1.04674 1.22599 1.00096 0.96584 0.90920 1.21198 0.97449 0.94542 1.01026 1.26451 1.05687 1.01215 1.16620 0.78259 0.64131 0.62779 0.66429 1.26122 1.08106 1.12092 1.09742 1.26366 1.19229 1.05120 1.06545 1.28305 1.09066 1.12015 0.94903 1.21063 1.00223 0.91413 0.96571 1.19678 0.93974 0.93957 1.04415 1.24359 1.08828 0.94206 0.89782 1.86407 1.79635 1.41994 1.28431 0.85651 0.76253 0.80686 0.79358 1.20425 1.16204 1.19255 1.18353 0.88381 0.86174 0.95543 1.84600 1.75261 1.35288 1.35410 0.89624 0.89685 0.90667 0.82163 0.76437 0.91455 0.91624 0.90381 0.92142 0.89260 0.89747 0.91013 0.90444 0.90240 0.92637 0.90895 0.91874 0.90622 0.89747 0.86019 0.88296 0.74854 0.72500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.63 9.78 71.23 0.70 1.32 16 2 C -0.12 0.06 5.89 -19.81 -0.12 -0.06 16 3 C -0.06 0.02 9.17 22.51 0.21 0.23 16 4 C -0.15 -0.98 5.87 -20.08 -0.12 -1.10 16 5 C 0.57 5.97 7.87 86.71 0.68 6.65 16 6 O -0.56 -11.11 16.67 -3.99 -0.07 -11.17 16 7 N -0.57 -2.03 4.65 -175.77 -0.82 -2.85 16 8 N -0.30 -1.17 4.15 -334.16 -1.39 -2.55 16 9 C 0.03 0.02 5.38 86.28 0.46 0.48 16 10 C -0.10 -0.03 5.74 30.78 0.18 0.14 16 11 C -0.41 1.54 5.04 72.30 0.36 1.90 16 12 Si 1.10 -4.82 11.99 68.60 0.82 -4.00 16 13 C -0.45 2.46 8.65 113.37 0.98 3.44 16 14 C -0.47 -0.83 8.65 113.37 0.98 0.15 16 15 C -0.27 0.41 4.85 127.53 0.62 1.03 16 16 C -0.07 -0.67 8.20 22.50 0.18 -0.48 16 17 C -0.12 -0.64 5.30 -19.81 -0.10 -0.74 16 18 C -0.06 -0.10 2.36 71.24 0.17 0.07 16 19 O -0.56 0.06 12.86 -148.98 -1.92 -1.85 16 20 Si 0.95 4.03 25.50 68.60 1.75 5.78 16 21 H -0.28 -2.79 6.72 99.48 0.67 -2.12 16 22 H -0.24 -0.39 7.11 99.48 0.71 0.31 16 23 H -0.27 -2.02 7.11 99.48 0.71 -1.31 16 24 C 0.16 0.37 6.66 22.64 0.15 0.52 16 25 O -0.49 0.42 11.84 -90.24 -1.07 -0.65 16 26 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 27 H 0.08 -0.70 8.08 -2.39 -0.02 -0.72 16 28 H 0.07 -0.33 7.52 -2.39 -0.02 -0.35 16 29 H 0.16 -1.20 6.41 -2.91 -0.02 -1.22 16 30 H 0.39 -1.39 6.87 -215.49 -1.48 -2.86 16 31 H 0.07 0.20 8.03 -2.39 -0.02 0.19 16 32 H 0.07 -0.25 7.78 -2.38 -0.02 -0.27 16 33 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.06 0.25 7.96 -2.38 -0.02 0.23 16 35 H 0.09 -0.55 7.99 -2.39 -0.02 -0.57 16 36 H 0.08 -0.34 7.99 -2.38 -0.02 -0.36 16 37 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 38 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 39 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 40 H 0.05 0.35 7.96 -2.39 -0.02 0.33 16 41 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 42 H 0.06 0.14 7.96 -2.39 -0.02 0.13 16 43 H 0.08 -0.44 7.92 -2.39 -0.02 -0.46 16 44 H 0.08 0.02 7.99 -2.39 -0.02 0.00 16 45 H 0.12 1.49 4.46 -2.91 -0.01 1.48 16 46 H 0.10 -0.16 7.82 -2.39 -0.02 -0.18 16 47 H 0.40 -3.58 8.74 -74.05 -0.65 -4.23 16 48 H 0.41 -3.21 9.06 -74.06 -0.67 -3.88 16 Total: 0.00 -23.29 386.72 1.56 -21.72 By element: Atomic # 1 Polarization: -16.91 SS G_CDS: -1.09 Total: -18.00 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.34 Total: 13.57 kcal Atomic # 7 Polarization: -3.20 SS G_CDS: -2.20 Total: -5.40 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -3.05 Total: -13.67 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 2.57 Total: 1.78 kcal Total: -23.29 1.56 -21.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.717 kcal (2) G-P(sol) polarization free energy of solvation -23.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds