Wall clock time and date at job start Sun Mar 7 2021 09:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86301 * 110.05990 * 2 1 4 4 C 1.87525 * 110.00313 * 238.63568 * 2 1 3 5 5 C 1.53930 * 106.84627 * 196.90368 * 4 2 1 6 6 C 1.52625 * 109.31581 * 57.20607 * 5 4 2 7 7 N 1.46362 * 111.88805 * 283.47737 * 6 5 4 8 8 N 1.36602 * 110.99775 * 203.19748 * 7 6 5 9 9 C 1.34770 * 120.00056 * 111.10189 * 8 7 6 10 10 O 1.21278 * 120.00150 * 354.99073 * 9 8 7 11 11 C 1.50697 * 119.99991 * 174.98965 * 9 8 7 12 12 C 1.50701 * 109.47517 * 179.97438 * 11 9 8 13 13 C 1.38279 * 119.93157 * 89.99943 * 12 11 9 14 14 C 1.38118 * 120.06356 * 179.97438 * 13 12 11 15 15 C 1.38829 * 119.93668 * 359.97438 * 14 13 12 16 16 N 1.40198 * 120.06703 * 179.97438 * 15 14 13 17 17 C 1.36572 * 125.67316 * 310.15961 * 16 15 14 18 18 C 1.34842 * 108.19976 * 180.29504 * 17 16 15 19 19 C 1.40940 * 107.47288 * 359.73620 * 18 17 16 20 20 C 1.34848 * 107.46627 * 359.97438 * 19 18 17 21 21 C 1.50700 * 125.90237 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.47461 * 150.03229 * 21 20 19 23 23 Si 1.86301 * 109.46725 * 30.02760 * 21 20 19 24 24 H 1.48506 * 109.47061 * 179.97438 * 23 21 20 25 25 H 1.48494 * 109.47756 * 300.00113 * 23 21 20 26 26 H 1.48504 * 109.46980 * 60.00296 * 23 21 20 27 27 C 1.38830 * 119.86484 * 0.25586 * 15 14 13 28 28 C 1.38120 * 119.93415 * 359.49079 * 27 15 14 29 29 C 1.47716 * 111.30630 * 79.02023 * 7 6 5 30 30 H 1.09002 * 109.46992 * 298.63501 * 1 2 3 31 31 H 1.08994 * 109.47055 * 58.63961 * 1 2 3 32 32 H 1.08995 * 109.46633 * 178.63785 * 1 2 3 33 33 H 1.09009 * 109.46621 * 181.36290 * 3 2 1 34 34 H 1.08993 * 109.47185 * 301.35741 * 3 2 1 35 35 H 1.08999 * 109.47389 * 61.36706 * 3 2 1 36 36 H 1.09004 * 109.97556 * 316.23203 * 4 2 1 37 37 H 1.08991 * 109.97583 * 77.47721 * 4 2 1 38 38 H 1.08999 * 109.49261 * 177.15623 * 5 4 2 39 39 H 1.08997 * 109.49897 * 297.21588 * 5 4 2 40 40 H 1.08998 * 108.99753 * 162.85383 * 6 5 4 41 41 H 1.09001 * 108.99591 * 44.09700 * 6 5 4 42 42 H 0.97000 * 119.99580 * 291.09868 * 8 7 6 43 43 H 1.09008 * 109.47054 * 60.00034 * 11 9 8 44 44 H 1.08997 * 109.47595 * 299.99943 * 11 9 8 45 45 H 1.08000 * 119.96624 * 0.02562 * 13 12 11 46 46 H 1.08000 * 120.03228 * 180.02562 * 14 13 12 47 47 H 1.08001 * 125.89829 * 0.03151 * 17 16 15 48 48 H 1.08006 * 126.26658 * 179.73829 * 18 17 16 49 49 H 1.07999 * 126.26964 * 180.02562 * 19 18 17 50 50 H 1.09005 * 109.47298 * 270.03052 * 21 20 19 51 51 H 0.96710 * 113.99388 * 299.99959 * 22 21 20 52 52 H 1.08005 * 120.02684 * 179.72177 * 27 15 14 53 53 H 1.07998 * 119.96133 * 180.25256 * 28 27 15 54 54 H 1.08996 * 109.95094 * 59.06200 * 29 7 6 55 55 H 1.09000 * 109.95013 * 180.31809 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5046 5 6 3.9817 -1.2501 -1.2279 6 6 4.0832 -2.0637 0.0595 7 7 3.9262 -1.2250 1.2487 8 7 4.5044 -1.8095 2.3396 9 6 5.6122 -1.2700 2.8854 10 8 6.1482 -0.3198 2.3555 11 6 6.1851 -1.8474 4.1540 12 6 7.4132 -1.0692 4.5504 13 6 7.2949 0.0321 5.3783 14 6 8.4188 0.7469 5.7437 15 6 9.6682 0.3586 5.2795 16 7 10.8107 1.0825 5.6483 17 6 10.9562 2.4379 5.5646 18 6 12.1906 2.7569 6.0038 19 6 12.8295 1.5577 6.3782 20 6 11.9620 0.5499 6.1545 21 6 12.2209 -0.9124 6.4110 22 8 10.9912 -1.5643 6.7346 23 14 13.4119 -1.0920 7.8323 24 1 13.6667 -2.5330 8.0856 25 1 14.6899 -0.4146 7.4961 26 1 12.8280 -0.4718 9.0488 27 6 9.7832 -0.7447 4.4446 28 6 8.6563 -1.4587 4.0868 29 6 2.5044 -0.9169 1.5044 30 1 -0.3633 0.4925 0.9020 31 1 -0.3633 0.5348 -0.8775 32 1 -0.3632 -1.0274 -0.0244 33 1 3.5918 1.7388 -0.0244 34 1 2.1244 2.2747 -0.8775 35 1 2.1641 2.2602 0.9020 36 1 1.9367 -1.8361 -1.6507 37 1 2.4232 -0.2849 -2.3887 38 1 4.3854 -1.8303 -2.0577 39 1 4.5490 -0.3257 -1.1204 40 1 5.0574 -2.5513 0.0952 41 1 3.3055 -2.8275 0.0588 42 1 4.1174 -2.6129 2.7215 43 1 6.4540 -2.8908 3.9893 44 1 5.4425 -1.7848 4.9494 45 1 6.3228 0.3330 5.7401 46 1 8.3258 1.6067 6.3906 47 1 10.2128 3.1335 5.2044 48 1 12.6124 3.7496 6.0587 49 1 13.8304 1.4633 6.7728 50 1 12.6495 -1.3676 5.5181 51 1 10.5532 -1.2099 7.5206 52 1 10.7534 -1.0464 4.0783 53 1 8.7458 -2.3195 3.4407 54 1 1.9430 -1.8407 1.6441 55 1 2.4135 -0.2879 2.3899 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13287746.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:07:36 Heat of formation + Delta-G solvation = 17.325645 kcal Electronic energy + Delta-G solvation = -33581.354482 eV Core-core repulsion = 29323.101145 eV Total energy + Delta-G solvation = -4258.253338 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.189 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.71663 -41.12485 -39.86971 -38.37154 -37.69918 -34.90029 -34.80359 -32.34000 -32.11062 -31.13057 -30.96943 -29.32371 -28.35313 -27.82614 -27.45423 -26.05803 -24.77280 -23.95085 -23.18472 -21.83291 -21.50855 -21.40299 -20.63088 -19.27748 -18.60883 -17.97366 -17.54584 -17.02730 -16.63039 -16.55936 -16.13011 -15.82133 -15.61895 -15.49629 -15.28590 -14.92844 -14.78595 -14.65818 -14.55261 -14.42449 -14.35837 -14.28564 -14.02916 -13.96942 -13.80665 -13.49103 -13.34986 -13.21012 -13.19230 -13.13224 -13.00669 -12.85159 -12.60446 -12.35543 -12.10682 -12.02609 -11.97366 -11.96505 -11.86780 -11.28905 -10.80917 -10.77479 -10.67803 -10.38711 -10.26658 -10.16524 -9.92324 -9.59290 -9.14605 -9.06445 0.01301 0.40628 0.98363 1.31954 1.49759 1.51776 1.54454 1.74052 1.85914 1.87522 1.91186 1.94082 2.08607 2.20511 2.62224 2.73794 3.37198 3.48145 3.64865 3.68708 3.79888 3.92724 3.97519 4.03863 4.13445 4.21752 4.23518 4.36437 4.45411 4.48119 4.50883 4.53550 4.55697 4.62014 4.66826 4.68503 4.75397 4.80072 4.81798 4.84860 4.85768 4.86405 4.93587 5.00700 5.09082 5.17705 5.21513 5.25150 5.29284 5.37754 5.46797 5.54609 5.58876 5.65659 5.82331 5.84796 5.90875 6.16795 6.35674 6.48856 6.51458 6.54687 7.63203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.094 2.906 3 C -0.466 4.466 4 C -0.417 4.417 5 C -0.104 4.104 6 C 0.028 3.972 7 N -0.303 5.303 8 N -0.581 5.581 9 C 0.527 3.473 10 O -0.559 6.559 11 C -0.092 4.092 12 C -0.065 4.065 13 C -0.097 4.097 14 C -0.126 4.126 15 C 0.112 3.888 16 N -0.394 5.394 17 C -0.020 4.020 18 C -0.200 4.200 19 C -0.211 4.211 20 C -0.021 4.021 21 C -0.059 4.059 22 O -0.542 6.542 23 Si 1.015 2.985 24 H -0.265 1.265 25 H -0.253 1.253 26 H -0.265 1.265 27 C -0.093 4.093 28 C -0.097 4.097 29 C -0.267 4.267 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.395 0.605 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.143 0.857 46 H 0.132 0.868 47 H 0.174 0.826 48 H 0.154 0.846 49 H 0.152 0.848 50 H 0.124 0.876 51 H 0.382 0.618 52 H 0.119 0.881 53 H 0.138 0.862 54 H 0.071 0.929 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 -4.936 1.123 7.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.283 2.717 3 C -0.571 4.571 4 C -0.502 4.502 5 C -0.143 4.143 6 C -0.100 4.100 7 N -0.119 5.119 8 N -0.327 5.327 9 C 0.314 3.686 10 O -0.435 6.435 11 C -0.133 4.133 12 C -0.066 4.066 13 C -0.115 4.115 14 C -0.145 4.145 15 C 0.023 3.977 16 N -0.067 5.067 17 C -0.148 4.148 18 C -0.224 4.224 19 C -0.235 4.235 20 C -0.131 4.131 21 C -0.168 4.168 22 O -0.347 6.347 23 Si 0.836 3.164 24 H -0.189 1.189 25 H -0.177 1.177 26 H -0.189 1.189 27 C -0.113 4.113 28 C -0.115 4.115 29 C -0.439 4.439 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.235 0.765 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.161 0.839 46 H 0.150 0.850 47 H 0.191 0.809 48 H 0.171 0.829 49 H 0.170 0.830 50 H 0.141 0.859 51 H 0.230 0.770 52 H 0.137 0.863 53 H 0.156 0.844 54 H 0.090 0.910 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.789 -4.439 0.787 6.578 hybrid contribution -0.666 -0.231 0.211 0.736 sum -5.456 -4.671 0.999 7.251 Atomic orbital electron populations 1.26145 1.19975 1.05146 1.04954 0.78258 0.65145 0.64713 0.63620 1.26354 1.05918 1.20791 1.04064 1.26481 0.99868 1.08856 1.15028 1.21190 0.97339 1.00346 0.95391 1.22549 1.02045 0.95322 0.90086 1.62965 1.14961 1.39215 0.94756 1.45600 1.28851 1.29769 1.28446 1.21009 0.78973 0.82946 0.85644 1.90723 1.59961 1.29204 1.63623 1.20720 0.96060 1.01429 0.95077 1.19509 0.94148 0.96079 0.96881 1.21047 0.98581 0.94289 0.97585 1.21094 0.91050 1.01326 1.01020 1.17789 0.85498 0.95119 0.99330 1.41554 1.10892 1.06186 1.48024 1.22299 1.00502 0.83278 1.08673 1.21181 0.94692 0.99367 1.07183 1.21023 1.00651 0.92223 1.09640 1.21329 0.87865 0.96786 1.07085 1.24899 0.94778 0.86552 1.10597 1.86501 1.36410 1.60717 1.51122 0.84793 0.77044 0.79401 0.75139 1.18908 1.17719 1.18882 1.20890 0.99420 0.94793 0.96148 1.21017 0.91402 1.00006 0.99097 1.28184 0.89934 1.07968 1.17801 0.90955 0.90618 0.90373 0.92629 0.91112 0.91751 0.89504 0.90024 0.90704 0.92232 0.91385 0.92128 0.76456 0.85041 0.84849 0.83884 0.84974 0.80857 0.82881 0.83029 0.85881 0.77048 0.86260 0.84414 0.91021 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.60 8.65 113.37 0.98 3.58 16 2 Si 1.09 -5.60 11.99 68.60 0.82 -4.77 16 3 C -0.47 -0.43 8.65 113.37 0.98 0.55 16 4 C -0.42 1.59 5.04 72.30 0.36 1.96 16 5 C -0.10 0.02 5.74 30.78 0.18 0.20 16 6 C 0.03 -0.02 5.38 86.28 0.46 0.45 16 7 N -0.30 -0.39 4.15 -334.15 -1.39 -1.78 16 8 N -0.58 0.63 4.71 -173.54 -0.82 -0.19 16 9 C 0.53 1.59 7.92 87.66 0.69 2.29 16 10 O -0.56 -7.81 16.36 -3.02 -0.05 -7.86 16 11 C -0.09 0.42 5.83 29.10 0.17 0.59 16 12 C -0.07 -0.10 4.38 -19.85 -0.09 -0.18 16 13 C -0.10 -0.20 9.69 22.25 0.22 0.02 16 14 C -0.13 -0.51 9.66 22.38 0.22 -0.29 16 15 C 0.11 0.71 4.89 38.09 0.19 0.89 16 16 N -0.39 -2.80 2.87 -333.41 -0.96 -3.75 16 17 C -0.02 -0.13 11.12 83.17 0.92 0.79 16 18 C -0.20 -1.24 10.86 22.15 0.24 -1.00 16 19 C -0.21 -1.26 9.43 22.15 0.21 -1.06 16 20 C -0.02 -0.12 6.02 41.04 0.25 0.13 16 21 C -0.06 -0.09 2.28 71.24 0.16 0.07 16 22 O -0.54 -1.05 9.90 -148.98 -1.47 -2.52 16 23 Si 1.01 0.25 26.57 68.60 1.82 2.08 16 24 H -0.26 -0.53 7.11 99.48 0.71 0.18 16 25 H -0.25 -0.21 6.82 99.48 0.68 0.47 16 26 H -0.26 -0.60 7.11 99.48 0.71 0.11 16 27 C -0.09 -0.55 7.68 22.38 0.17 -0.38 16 28 C -0.10 -0.33 9.69 22.25 0.22 -0.11 16 29 C -0.27 0.86 4.85 127.53 0.62 1.48 16 30 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 31 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 33 H 0.05 0.30 7.96 -2.38 -0.02 0.28 16 34 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 35 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 36 H 0.09 -0.51 7.99 -2.38 -0.02 -0.53 16 37 H 0.08 -0.31 7.99 -2.39 -0.02 -0.33 16 38 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 40 H 0.07 0.08 8.03 -2.39 -0.02 0.06 16 41 H 0.06 -0.27 7.78 -2.39 -0.02 -0.29 16 42 H 0.40 -3.09 8.83 -215.50 -1.90 -4.99 16 43 H 0.13 -1.28 8.08 -2.38 -0.02 -1.30 16 44 H 0.13 -1.33 8.08 -2.39 -0.02 -1.35 16 45 H 0.14 -0.28 8.06 -2.91 -0.02 -0.31 16 46 H 0.13 0.28 8.06 -2.91 -0.02 0.26 16 47 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 48 H 0.15 0.40 8.06 -2.91 -0.02 0.38 16 49 H 0.15 0.44 6.69 -2.91 -0.02 0.42 16 50 H 0.12 -0.01 7.96 -2.38 -0.02 -0.03 16 51 H 0.38 -0.70 8.70 -74.05 -0.64 -1.34 16 52 H 0.12 0.73 7.68 -2.91 -0.02 0.71 16 53 H 0.14 0.01 8.06 -2.91 -0.02 -0.01 16 54 H 0.07 -0.49 7.92 -2.39 -0.02 -0.51 16 55 H 0.09 -0.18 7.99 -2.39 -0.02 -0.20 16 Total: 0.00 -22.04 443.25 4.18 -17.86 By element: Atomic # 1 Polarization: -8.10 SS G_CDS: -0.94 Total: -9.04 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 7.15 Total: 9.98 kcal Atomic # 7 Polarization: -2.56 SS G_CDS: -3.16 Total: -5.72 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.52 Total: -10.38 kcal Atomic # 14 Polarization: -5.34 SS G_CDS: 2.65 Total: -2.70 kcal Total: -22.04 4.18 -17.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287746.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.189 kcal (2) G-P(sol) polarization free energy of solvation -22.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds