Wall clock time and date at job start Sun Mar 7 2021 09:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 110.06098 * 2 1 4 4 C 1.87524 * 110.00257 * 238.64040 * 2 1 3 5 5 C 1.53936 * 106.84681 * 196.90386 * 4 2 1 6 6 C 1.52619 * 109.31326 * 57.20170 * 5 4 2 7 7 N 1.46362 * 111.89314 * 283.47600 * 6 5 4 8 8 N 1.36588 * 111.00380 * 203.19501 * 7 6 5 9 9 C 1.34776 * 120.00228 * 111.11811 * 8 7 6 10 10 O 1.21561 * 119.99649 * 354.98047 * 9 8 7 11 11 C 1.47840 * 120.00451 * 174.97873 * 9 8 7 12 12 C 1.39991 * 120.55922 * 180.27316 * 11 9 8 13 13 C 1.38402 * 118.28357 * 180.26423 * 12 11 9 14 14 C 1.50700 * 120.34589 * 179.70651 * 13 12 11 15 15 O 1.42904 * 109.46957 * 65.02219 * 14 13 12 16 16 Si 1.86294 * 109.47097 * 185.02142 * 14 13 12 17 17 H 1.48495 * 109.47135 * 60.00166 * 16 14 13 18 18 H 1.48506 * 109.46908 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47215 * 299.99849 * 16 14 13 20 20 C 1.38309 * 119.30816 * 359.72751 * 13 12 11 21 21 N 1.31957 * 121.07738 * 0.02562 * 20 13 12 22 22 C 1.31665 * 121.88436 * 359.97438 * 21 20 13 23 23 C 1.47733 * 111.30183 * 79.01858 * 7 6 5 24 24 H 1.08995 * 109.47350 * 298.63579 * 1 2 3 25 25 H 1.09005 * 109.47093 * 58.63448 * 1 2 3 26 26 H 1.08995 * 109.47222 * 178.63656 * 1 2 3 27 27 H 1.09002 * 109.46823 * 181.35801 * 3 2 1 28 28 H 1.08995 * 109.47236 * 301.36310 * 3 2 1 29 29 H 1.09007 * 109.46802 * 61.36630 * 3 2 1 30 30 H 1.09007 * 109.97145 * 316.23346 * 4 2 1 31 31 H 1.08990 * 109.97774 * 77.47517 * 4 2 1 32 32 H 1.08998 * 109.49551 * 177.15021 * 5 4 2 33 33 H 1.08994 * 109.49473 * 297.21641 * 5 4 2 34 34 H 1.08999 * 108.99783 * 162.85450 * 6 5 4 35 35 H 1.09002 * 108.99766 * 44.09599 * 6 5 4 36 36 H 0.97000 * 120.00774 * 291.11936 * 8 7 6 37 37 H 1.08003 * 120.85799 * 359.97438 * 12 11 9 38 38 H 1.09006 * 109.47084 * 305.02689 * 14 13 12 39 39 H 0.96694 * 114.00405 * 60.00168 * 15 14 13 40 40 H 1.07992 * 119.45908 * 179.97438 * 20 13 12 41 41 H 1.07992 * 119.71935 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.94614 * 59.06704 * 23 7 6 43 43 H 1.08998 * 109.94228 * 180.23183 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5045 -0.9170 -1.5047 5 6 3.9817 -1.2501 -1.2280 6 6 4.0831 -2.0636 0.0593 7 7 3.9263 -1.2250 1.2486 8 7 4.5042 -1.8095 2.3394 9 6 5.6120 -1.2699 2.8855 10 8 6.1492 -0.3175 2.3545 11 6 6.1737 -1.8362 4.1303 12 6 7.3205 -1.2813 4.7105 13 6 7.8093 -1.8522 5.8727 14 6 9.0446 -1.2963 6.5330 15 8 8.7812 0.0294 6.9969 16 14 9.5173 -2.3765 7.9753 17 1 9.7911 -3.7541 7.4932 18 1 10.7343 -1.8283 8.6263 19 1 8.4031 -2.4076 8.9565 20 6 7.1523 -2.9385 6.4216 21 7 6.0700 -3.4375 5.8551 22 6 5.5667 -2.9297 4.7495 23 6 2.5042 -0.9169 1.5042 24 1 -0.3634 0.4925 0.9019 25 1 -0.3633 0.5349 -0.8775 26 1 -0.3633 -1.0273 -0.0245 27 1 3.5917 1.7388 -0.0244 28 1 2.1243 2.2747 -0.8775 29 1 2.1641 2.2602 0.9021 30 1 1.9366 -1.8359 -1.6508 31 1 2.4231 -0.2848 -2.3888 32 1 4.3854 -1.8302 -2.0577 33 1 4.5490 -0.3256 -1.1204 34 1 5.0573 -2.5512 0.0950 35 1 3.3054 -2.8273 0.0586 36 1 4.1175 -2.6130 2.7212 37 1 7.8139 -0.4326 4.2603 38 1 9.8625 -1.2734 5.8127 39 1 8.0633 0.0849 7.6422 40 1 7.5318 -3.3862 7.3282 41 1 4.6789 -3.3656 4.3158 42 1 1.9428 -1.8407 1.6439 43 1 2.4134 -0.2892 2.3907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13287814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:07:54 Heat of formation + Delta-G solvation = -32.111491 kcal Electronic energy + Delta-G solvation = -23470.406591 eV Core-core repulsion = 20061.300777 eV Total energy + Delta-G solvation = -3409.105814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91002 -40.57982 -38.44634 -37.97033 -35.04692 -33.76146 -33.39753 -31.33193 -29.44671 -28.44296 -27.65729 -27.33528 -26.23751 -24.29920 -23.80344 -21.95741 -21.60656 -19.40022 -18.70979 -18.13852 -17.80172 -17.44523 -16.79877 -16.45089 -15.99177 -15.59382 -15.43659 -15.10017 -14.95617 -14.82094 -14.59650 -14.31208 -14.21765 -14.12139 -13.87962 -13.62616 -13.58003 -13.30501 -13.18575 -13.04062 -12.77553 -12.29658 -12.11434 -12.09804 -12.05470 -11.45875 -11.04989 -10.99468 -10.90371 -10.62697 -10.54669 -10.43098 -10.35642 -10.25098 -9.72841 -0.58232 -0.03045 0.97615 1.28723 1.30742 1.38664 1.67510 1.76948 1.80011 1.80540 1.99887 2.49148 2.65180 2.99396 3.24285 3.28740 3.40111 3.57949 3.69423 3.72878 3.92169 4.07307 4.09253 4.16955 4.29805 4.46388 4.47308 4.57646 4.61873 4.63066 4.66857 4.75332 4.82744 4.83535 4.88638 4.89570 5.00876 5.22028 5.28433 5.34536 5.39469 5.65346 5.71158 6.20733 6.30992 6.39924 6.60256 7.44903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.034 2.966 3 C -0.444 4.444 4 C -0.411 4.411 5 C -0.100 4.100 6 C 0.025 3.975 7 N -0.275 5.275 8 N -0.582 5.582 9 C 0.579 3.421 10 O -0.502 6.502 11 C -0.183 4.183 12 C 0.016 3.984 13 C -0.178 4.178 14 C -0.077 4.077 15 O -0.534 6.534 16 Si 0.944 3.056 17 H -0.246 1.246 18 H -0.246 1.246 19 H -0.247 1.247 20 C 0.119 3.881 21 N -0.478 5.478 22 C 0.138 3.862 23 C -0.261 4.261 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.377 0.623 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.378 0.622 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.055 0.945 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -2.461 0.229 3.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.227 2.773 3 C -0.552 4.552 4 C -0.497 4.497 5 C -0.139 4.139 6 C -0.103 4.103 7 N -0.091 5.091 8 N -0.327 5.327 9 C 0.365 3.635 10 O -0.374 6.374 11 C -0.189 4.189 12 C -0.011 4.011 13 C -0.181 4.181 14 C -0.188 4.188 15 O -0.339 6.339 16 Si 0.765 3.235 17 H -0.169 1.169 18 H -0.169 1.169 19 H -0.171 1.171 20 C -0.037 4.037 21 N -0.185 5.185 22 C -0.021 4.021 23 C -0.434 4.434 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.217 0.783 37 H 0.173 0.827 38 H 0.142 0.858 39 H 0.225 0.775 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.074 0.926 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.614 -2.463 0.498 2.987 hybrid contribution -0.954 -0.542 -0.056 1.099 sum -2.568 -3.005 0.442 3.978 Atomic orbital electron populations 1.26121 1.20295 1.04593 1.04859 0.79177 0.65827 0.67637 0.64675 1.26035 1.07317 1.17706 1.04180 1.26387 1.00746 1.08102 1.14438 1.21180 0.96556 1.01189 0.94965 1.22609 1.02211 0.95222 0.90284 1.63001 1.14003 1.38135 0.93915 1.45476 1.28997 1.29264 1.28933 1.17788 0.79432 0.83157 0.83091 1.90806 1.58565 1.26431 1.61622 1.21027 0.99517 1.00189 0.98204 1.21636 0.91533 0.96453 0.91461 1.21403 1.00214 0.98597 0.97854 1.24962 0.96624 0.90857 1.06366 1.86566 1.58275 1.25309 1.63705 0.85755 0.81838 0.78557 0.77307 1.16914 1.16938 1.17067 1.22921 0.90582 0.91990 0.98206 1.67716 1.11330 1.29628 1.09856 1.23026 0.97529 0.90995 0.90549 1.28103 0.90433 1.07190 1.17654 0.91043 0.90660 0.91195 0.90329 0.91296 0.91348 0.90690 0.90040 0.90833 0.90160 0.90187 0.93680 0.78333 0.82673 0.85786 0.77503 0.82587 0.82363 0.92617 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.02 8.65 101.05 0.87 1.89 16 2 Si 1.03 -2.64 11.99 -169.99 -2.04 -4.68 16 3 C -0.44 0.21 8.65 101.05 0.87 1.09 16 4 C -0.41 0.80 5.04 37.65 0.19 0.99 16 5 C -0.10 0.07 5.74 -26.44 -0.15 -0.08 16 6 C 0.02 -0.01 5.38 -4.31 -0.02 -0.03 16 7 N -0.27 -0.20 4.15 -56.96 -0.24 -0.43 16 8 N -0.58 -0.22 4.66 30.53 0.14 -0.07 16 9 C 0.58 1.54 7.88 -12.33 -0.10 1.44 16 10 O -0.50 -3.28 16.75 5.31 0.09 -3.19 16 11 C -0.18 -0.19 5.89 -104.82 -0.62 -0.80 16 12 C 0.02 0.02 9.38 -38.86 -0.36 -0.35 16 13 C -0.18 0.04 5.35 -104.54 -0.56 -0.51 16 14 C -0.08 0.11 2.82 36.01 0.10 0.21 16 15 O -0.53 0.25 12.84 -35.23 -0.45 -0.20 16 16 Si 0.94 -1.76 25.16 -169.99 -4.28 -6.04 16 17 H -0.25 0.32 7.11 56.52 0.40 0.72 16 18 H -0.25 0.07 7.11 56.52 0.40 0.47 16 19 H -0.25 0.47 7.04 56.52 0.40 0.87 16 20 C 0.12 0.01 9.84 -17.47 -0.17 -0.16 16 21 N -0.48 -0.59 10.35 -12.91 -0.13 -0.73 16 22 C 0.14 -0.02 10.71 -17.13 -0.18 -0.20 16 23 C -0.26 0.32 4.85 60.52 0.29 0.61 16 24 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 25 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 26 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 27 H 0.08 0.08 7.96 -51.93 -0.41 -0.33 16 28 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 30 H 0.07 -0.18 7.99 -51.93 -0.42 -0.59 16 31 H 0.08 -0.17 7.99 -51.93 -0.42 -0.59 16 32 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 33 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 34 H 0.08 0.02 8.03 -51.93 -0.42 -0.40 16 35 H 0.04 -0.08 7.78 -51.93 -0.40 -0.48 16 36 H 0.38 -0.91 6.91 -185.16 -1.28 -2.19 16 37 H 0.16 0.22 7.74 -52.48 -0.41 -0.18 16 38 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 39 H 0.38 -1.41 8.70 45.56 0.40 -1.01 16 40 H 0.16 -0.25 4.86 -52.49 -0.26 -0.50 16 41 H 0.16 -0.49 6.44 -52.49 -0.34 -0.83 16 42 H 0.06 -0.14 7.92 -51.93 -0.41 -0.55 16 43 H 0.09 -0.07 7.99 -51.93 -0.42 -0.48 16 LS Contribution 351.54 15.07 5.30 5.30 Total: 0.00 -7.91 351.54 -8.33 -16.24 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: -6.89 Total: -10.30 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 0.16 Total: 4.10 kcal Atomic # 7 Polarization: -1.01 SS G_CDS: -0.23 Total: -1.24 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -0.36 Total: -3.39 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: -6.32 Total: -10.71 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -7.91 -8.33 -16.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.869 kcal (2) G-P(sol) polarization free energy of solvation -7.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds