Wall clock time and date at job start Sun Mar 7 2021 09:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 110.06098 * 2 1 4 4 C 1.87524 * 110.00257 * 238.64040 * 2 1 3 5 5 C 1.53936 * 106.84681 * 196.90386 * 4 2 1 6 6 C 1.52619 * 109.31326 * 57.20170 * 5 4 2 7 7 N 1.46362 * 111.89314 * 283.47600 * 6 5 4 8 8 N 1.36588 * 111.00380 * 203.19501 * 7 6 5 9 9 C 1.34776 * 120.00228 * 111.11811 * 8 7 6 10 10 O 1.21561 * 119.99649 * 354.98047 * 9 8 7 11 11 C 1.47840 * 120.00451 * 174.97873 * 9 8 7 12 12 C 1.39991 * 120.55922 * 180.27316 * 11 9 8 13 13 C 1.38402 * 118.28357 * 180.26423 * 12 11 9 14 14 C 1.50700 * 120.34589 * 179.70651 * 13 12 11 15 15 O 1.42904 * 109.46957 * 65.02219 * 14 13 12 16 16 Si 1.86294 * 109.47097 * 185.02142 * 14 13 12 17 17 H 1.48495 * 109.47135 * 60.00166 * 16 14 13 18 18 H 1.48506 * 109.46908 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47215 * 299.99849 * 16 14 13 20 20 C 1.38309 * 119.30816 * 359.72751 * 13 12 11 21 21 N 1.31957 * 121.07738 * 0.02562 * 20 13 12 22 22 C 1.31665 * 121.88436 * 359.97438 * 21 20 13 23 23 C 1.47733 * 111.30183 * 79.01858 * 7 6 5 24 24 H 1.08995 * 109.47350 * 298.63579 * 1 2 3 25 25 H 1.09005 * 109.47093 * 58.63448 * 1 2 3 26 26 H 1.08995 * 109.47222 * 178.63656 * 1 2 3 27 27 H 1.09002 * 109.46823 * 181.35801 * 3 2 1 28 28 H 1.08995 * 109.47236 * 301.36310 * 3 2 1 29 29 H 1.09007 * 109.46802 * 61.36630 * 3 2 1 30 30 H 1.09007 * 109.97145 * 316.23346 * 4 2 1 31 31 H 1.08990 * 109.97774 * 77.47517 * 4 2 1 32 32 H 1.08998 * 109.49551 * 177.15021 * 5 4 2 33 33 H 1.08994 * 109.49473 * 297.21641 * 5 4 2 34 34 H 1.08999 * 108.99783 * 162.85450 * 6 5 4 35 35 H 1.09002 * 108.99766 * 44.09599 * 6 5 4 36 36 H 0.97000 * 120.00774 * 291.11936 * 8 7 6 37 37 H 1.08003 * 120.85799 * 359.97438 * 12 11 9 38 38 H 1.09006 * 109.47084 * 305.02689 * 14 13 12 39 39 H 0.96694 * 114.00405 * 60.00168 * 15 14 13 40 40 H 1.07992 * 119.45908 * 179.97438 * 20 13 12 41 41 H 1.07992 * 119.71935 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.94614 * 59.06704 * 23 7 6 43 43 H 1.08998 * 109.94228 * 180.23183 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5045 -0.9170 -1.5047 5 6 3.9817 -1.2501 -1.2280 6 6 4.0831 -2.0636 0.0593 7 7 3.9263 -1.2250 1.2486 8 7 4.5042 -1.8095 2.3394 9 6 5.6120 -1.2699 2.8855 10 8 6.1492 -0.3175 2.3545 11 6 6.1737 -1.8362 4.1303 12 6 7.3205 -1.2813 4.7105 13 6 7.8093 -1.8522 5.8727 14 6 9.0446 -1.2963 6.5330 15 8 8.7812 0.0294 6.9969 16 14 9.5173 -2.3765 7.9753 17 1 9.7911 -3.7541 7.4932 18 1 10.7343 -1.8283 8.6263 19 1 8.4031 -2.4076 8.9565 20 6 7.1523 -2.9385 6.4216 21 7 6.0700 -3.4375 5.8551 22 6 5.5667 -2.9297 4.7495 23 6 2.5042 -0.9169 1.5042 24 1 -0.3634 0.4925 0.9019 25 1 -0.3633 0.5349 -0.8775 26 1 -0.3633 -1.0273 -0.0245 27 1 3.5917 1.7388 -0.0244 28 1 2.1243 2.2747 -0.8775 29 1 2.1641 2.2602 0.9021 30 1 1.9366 -1.8359 -1.6508 31 1 2.4231 -0.2848 -2.3888 32 1 4.3854 -1.8302 -2.0577 33 1 4.5490 -0.3256 -1.1204 34 1 5.0573 -2.5512 0.0950 35 1 3.3054 -2.8273 0.0586 36 1 4.1175 -2.6130 2.7212 37 1 7.8139 -0.4326 4.2603 38 1 9.8625 -1.2734 5.8127 39 1 8.0633 0.0849 7.6422 40 1 7.5318 -3.3862 7.3282 41 1 4.6789 -3.3656 4.3158 42 1 1.9428 -1.8407 1.6439 43 1 2.4134 -0.2892 2.3907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13287814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:07:53 Heat of formation + Delta-G solvation = -29.728672 kcal Electronic energy + Delta-G solvation = -23470.303265 eV Core-core repulsion = 20061.300777 eV Total energy + Delta-G solvation = -3409.002487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96425 -40.64685 -38.54592 -37.92715 -35.07641 -33.79607 -33.41164 -31.32628 -29.31630 -28.34071 -27.55511 -27.28812 -26.25955 -24.27604 -23.80431 -21.90009 -21.70973 -19.43201 -18.70950 -18.14310 -17.79548 -17.43713 -16.82495 -16.39573 -16.04055 -15.61728 -15.48660 -15.04194 -14.90202 -14.74135 -14.59356 -14.32726 -14.24814 -13.96754 -13.79282 -13.54599 -13.49773 -13.18080 -13.10785 -12.96900 -12.72354 -12.16380 -12.04444 -12.03228 -11.96749 -11.57509 -11.10696 -10.95698 -10.80548 -10.59304 -10.58705 -10.42406 -10.32915 -10.21221 -9.68017 -0.61783 -0.06088 1.09819 1.35211 1.45367 1.51579 1.66870 1.82425 1.91227 1.92158 2.13786 2.59686 2.62486 3.04127 3.27477 3.36872 3.47615 3.62345 3.69482 3.73664 4.00925 4.06537 4.15866 4.23335 4.42376 4.53246 4.56767 4.68055 4.73445 4.80958 4.81527 4.82314 4.86175 4.86781 4.88373 4.92789 5.10012 5.27830 5.30735 5.48281 5.59786 5.67338 5.78773 6.12584 6.26640 6.58453 6.64672 7.38270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.097 2.903 3 C -0.466 4.466 4 C -0.415 4.415 5 C -0.103 4.103 6 C 0.025 3.975 7 N -0.300 5.300 8 N -0.570 5.570 9 C 0.579 3.421 10 O -0.552 6.552 11 C -0.190 4.190 12 C 0.004 3.996 13 C -0.173 4.173 14 C -0.080 4.080 15 O -0.551 6.551 16 Si 0.981 3.019 17 H -0.250 1.250 18 H -0.269 1.269 19 H -0.241 1.241 20 C 0.117 3.883 21 N -0.495 5.495 22 C 0.145 3.855 23 C -0.272 4.272 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.393 0.607 37 H 0.144 0.856 38 H 0.128 0.872 39 H 0.390 0.610 40 H 0.173 0.827 41 H 0.187 0.813 42 H 0.075 0.925 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 -3.908 0.538 5.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.285 2.715 3 C -0.572 4.572 4 C -0.501 4.501 5 C -0.142 4.142 6 C -0.103 4.103 7 N -0.117 5.117 8 N -0.315 5.315 9 C 0.366 3.634 10 O -0.428 6.428 11 C -0.197 4.197 12 C -0.022 4.022 13 C -0.175 4.175 14 C -0.190 4.190 15 O -0.358 6.358 16 Si 0.804 3.196 17 H -0.174 1.174 18 H -0.194 1.194 19 H -0.165 1.165 20 C -0.039 4.039 21 N -0.203 5.203 22 C -0.014 4.014 23 C -0.443 4.443 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.235 0.765 37 H 0.161 0.839 38 H 0.146 0.854 39 H 0.240 0.760 40 H 0.190 0.810 41 H 0.204 0.796 42 H 0.093 0.907 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.035 -3.920 0.817 5.025 hybrid contribution -0.501 -0.052 -0.150 0.526 sum -3.536 -3.972 0.666 5.360 Atomic orbital electron populations 1.26151 1.19972 1.05178 1.04970 0.78227 0.65136 0.64735 0.63355 1.26354 1.06050 1.20686 1.04102 1.26464 0.99803 1.08903 1.14938 1.21194 0.97440 1.00437 0.95116 1.22608 1.02315 0.95462 0.89871 1.62988 1.15265 1.39149 0.94274 1.45356 1.28175 1.29347 1.28604 1.18065 0.79532 0.82525 0.83254 1.90778 1.60190 1.28730 1.63135 1.20954 0.99875 1.00941 0.97884 1.21671 0.91912 0.96494 0.92142 1.21458 1.00435 0.98372 0.97256 1.25112 0.96203 0.90707 1.06963 1.86533 1.59034 1.25911 1.64311 0.85226 0.80645 0.77478 0.76289 1.17370 1.19423 1.16466 1.23217 0.90271 0.91809 0.98572 1.67782 1.11929 1.30140 1.10404 1.23382 0.97895 0.90141 0.89933 1.28304 0.89494 1.08277 1.18235 0.91038 0.90511 0.90350 0.92449 0.90970 0.91831 0.89394 0.89784 0.90420 0.91960 0.91270 0.91717 0.76514 0.83861 0.85389 0.76019 0.80987 0.79599 0.90672 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.67 8.65 113.37 0.98 3.65 16 2 Si 1.10 -5.91 11.99 68.60 0.82 -5.09 16 3 C -0.47 -0.25 8.65 113.37 0.98 0.73 16 4 C -0.42 1.89 5.04 72.30 0.36 2.25 16 5 C -0.10 0.10 5.74 30.78 0.18 0.27 16 6 C 0.02 -0.02 5.38 86.28 0.46 0.45 16 7 N -0.30 -0.57 4.15 -334.13 -1.39 -1.96 16 8 N -0.57 -0.63 4.66 -175.60 -0.82 -1.45 16 9 C 0.58 3.92 7.88 86.78 0.68 4.61 16 10 O -0.55 -8.70 16.75 -3.91 -0.07 -8.77 16 11 C -0.19 -0.55 5.89 -19.99 -0.12 -0.67 16 12 C 0.00 0.01 9.38 22.73 0.21 0.23 16 13 C -0.17 0.01 5.35 -19.81 -0.11 -0.09 16 14 C -0.08 0.20 2.82 71.24 0.20 0.40 16 15 O -0.55 0.20 12.84 -148.98 -1.91 -1.72 16 16 Si 0.98 -3.94 25.16 68.60 1.73 -2.21 16 17 H -0.25 0.82 7.11 99.48 0.71 1.53 16 18 H -0.27 0.03 7.11 99.48 0.71 0.73 16 19 H -0.24 1.20 7.04 99.48 0.70 1.90 16 20 C 0.12 -0.02 9.84 84.69 0.83 0.81 16 21 N -0.49 -0.89 10.35 -194.77 -2.01 -2.91 16 22 C 0.15 -0.11 10.71 85.04 0.91 0.81 16 23 C -0.27 0.78 4.85 127.53 0.62 1.40 16 24 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 25 H 0.08 -0.43 7.96 -2.38 -0.02 -0.45 16 26 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 27 H 0.06 0.28 7.96 -2.39 -0.02 0.26 16 28 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 29 H 0.06 0.07 7.96 -2.38 -0.02 0.05 16 30 H 0.09 -0.59 7.99 -2.38 -0.02 -0.61 16 31 H 0.08 -0.40 7.99 -2.39 -0.02 -0.42 16 32 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 34 H 0.07 0.08 8.03 -2.39 -0.02 0.07 16 35 H 0.06 -0.31 7.78 -2.39 -0.02 -0.33 16 36 H 0.39 -2.18 6.91 -215.50 -1.49 -3.67 16 37 H 0.14 0.79 7.74 -2.91 -0.02 0.77 16 38 H 0.13 -0.47 7.96 -2.38 -0.02 -0.49 16 39 H 0.39 -2.79 8.70 -74.06 -0.64 -3.43 16 40 H 0.17 -0.72 4.86 -2.91 -0.01 -0.74 16 41 H 0.19 -1.42 6.44 -2.91 -0.02 -1.44 16 42 H 0.07 -0.51 7.92 -2.39 -0.02 -0.53 16 43 H 0.09 -0.12 7.99 -2.39 -0.02 -0.14 16 Total: 0.00 -19.47 351.54 2.20 -17.27 By element: Atomic # 1 Polarization: -7.67 SS G_CDS: -0.36 Total: -8.03 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.20 Total: 14.85 kcal Atomic # 7 Polarization: -2.10 SS G_CDS: -4.22 Total: -6.32 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -1.98 Total: -10.48 kcal Atomic # 14 Polarization: -9.85 SS G_CDS: 2.55 Total: -7.30 kcal Total: -19.47 2.20 -17.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13287814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.455 kcal (2) G-P(sol) polarization free energy of solvation -19.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds