Wall clock time and date at job start Sun Mar 7 2021 09:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36416 * 125.79821 * 2 1 4 4 C 1.47382 * 127.19494 * 0.02562 * 3 2 1 5 5 O 1.21610 * 119.99664 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.36594 * 119.99820 * 185.00131 * 6 4 3 8 8 C 1.46363 * 110.99928 * 124.56830 * 7 6 4 9 9 C 1.52618 * 111.89156 * 203.20013 * 8 7 6 10 10 C 1.53932 * 109.30984 * 283.47421 * 9 8 7 11 11 Si 1.87517 * 106.84896 * 57.20793 * 10 9 8 12 12 C 1.86293 * 110.00565 * 75.50256 * 11 10 9 13 13 C 1.86306 * 110.00186 * 196.80578 * 11 10 9 14 14 C 1.47719 * 111.00445 * 248.91369 * 7 6 4 15 15 C 1.47026 * 105.61517 * 180.25954 * 3 2 1 16 16 C 1.34176 * 105.95360 * 359.57695 * 15 3 2 17 17 C 1.50693 * 125.44073 * 180.14455 * 16 15 3 18 18 O 1.42902 * 109.46921 * 300.36063 * 17 16 15 19 19 Si 1.86301 * 109.47513 * 180.36357 * 17 16 15 20 20 H 1.48498 * 109.47319 * 179.97438 * 19 17 16 21 21 H 1.48501 * 109.46603 * 299.99683 * 19 17 16 22 22 H 1.48499 * 109.47330 * 59.99271 * 19 17 16 23 23 O 1.33648 * 125.80470 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46926 * 89.99683 * 1 2 3 25 25 H 1.09001 * 109.47082 * 209.99319 * 1 2 3 26 26 H 1.08994 * 109.47228 * 329.99383 * 1 2 3 27 27 H 0.97000 * 119.99920 * 5.01111 * 6 4 3 28 28 H 1.08991 * 109.00025 * 82.57173 * 8 7 6 29 29 H 1.09000 * 108.92957 * 323.77326 * 8 7 6 30 30 H 1.08999 * 109.50012 * 163.52437 * 9 8 7 31 31 H 1.09004 * 109.52879 * 43.44397 * 9 8 7 32 32 H 1.08998 * 109.97591 * 297.86509 * 10 9 8 33 33 H 1.09010 * 110.05115 * 176.58191 * 10 9 8 34 34 H 1.08998 * 109.47172 * 60.00353 * 12 11 10 35 35 H 1.09001 * 109.47329 * 299.99899 * 12 11 10 36 36 H 1.09010 * 109.47176 * 180.02562 * 12 11 10 37 37 H 1.08992 * 109.47169 * 298.68289 * 13 11 10 38 38 H 1.09005 * 109.47162 * 58.68401 * 13 11 10 39 39 H 1.09003 * 109.46840 * 178.68112 * 13 11 10 40 40 H 1.08999 * 109.94761 * 56.14457 * 14 7 6 41 41 H 1.09000 * 109.94974 * 294.89015 * 14 7 6 42 42 H 1.07999 * 127.02159 * 179.73694 * 15 3 2 43 43 H 1.08992 * 109.47730 * 60.35885 * 17 16 15 44 44 H 0.96705 * 114.00288 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.1064 0.0000 4 6 1.8739 2.5158 0.0005 5 8 0.6889 2.7892 0.0006 6 7 2.7929 3.5016 0.0010 7 7 2.3966 4.8047 0.1046 8 6 3.0564 5.4656 1.2316 9 6 2.2647 6.6730 1.7261 10 6 2.4705 7.8491 0.7545 11 14 1.9289 7.2557 -0.9398 12 6 0.0691 7.1987 -1.0307 13 6 2.5963 8.3923 -2.2565 14 6 2.6348 5.5326 -1.1586 15 6 3.6849 0.5992 -0.0064 16 6 3.5860 -0.7389 -0.0001 17 6 4.7459 -1.7009 -0.0001 18 8 5.5430 -1.4859 -1.1665 19 14 4.1028 -3.4494 -0.0010 20 1 5.2459 -4.3972 -0.0017 21 1 3.2746 -3.6727 1.2112 22 1 3.2752 -3.6718 -1.2138 23 8 2.2889 -1.0839 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 3.7357 3.2857 -0.0724 28 1 4.0474 5.7947 0.9193 29 1 3.1611 4.7513 2.0483 30 1 2.6147 6.9558 2.7189 31 1 1.2054 6.4202 1.7721 32 1 3.5226 8.1331 0.7311 33 1 1.8624 8.6996 1.0631 34 1 -0.3340 8.1960 -0.8545 35 1 -0.3110 6.5140 -0.2726 36 1 -0.2360 6.8525 -2.0183 37 1 2.1989 9.3959 -2.1057 38 1 3.6843 8.4193 -2.1958 39 1 2.2962 8.0264 -3.2385 40 1 2.1299 5.0256 -1.9808 41 1 3.7048 5.5916 -1.3577 42 1 4.5927 1.1842 -0.0122 43 1 5.3534 -1.5377 0.8900 44 1 6.3092 -2.0721 -1.2329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13308374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:03 Heat of formation + Delta-G solvation = -58.299620 kcal Electronic energy + Delta-G solvation = -24372.553074 eV Core-core repulsion = 20837.281516 eV Total energy + Delta-G solvation = -3535.271557 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.67357 -40.65166 -38.34399 -38.02701 -34.88906 -34.03159 -33.17458 -31.48045 -29.41828 -29.33391 -28.37462 -27.58140 -26.04939 -24.91311 -23.61417 -22.17833 -21.65778 -20.58265 -18.90538 -18.40109 -18.13405 -17.28702 -16.91830 -16.62886 -16.19217 -15.84070 -15.25421 -15.07354 -14.84463 -14.74161 -14.58766 -14.40306 -14.08428 -14.00890 -13.98436 -13.81690 -13.79525 -13.54178 -13.23858 -13.11545 -13.08512 -12.98365 -12.57509 -12.24193 -12.07135 -12.06508 -12.01418 -11.25066 -10.83730 -10.81522 -10.67627 -10.55269 -10.36461 -10.01826 -9.67596 -9.46793 0.38864 0.86609 1.00441 1.24777 1.44081 1.48020 1.66578 1.78839 1.84773 1.89381 2.14044 2.52213 2.58454 3.22405 3.45715 3.48638 3.78759 3.83213 3.96707 4.12029 4.13092 4.23902 4.42069 4.48040 4.50524 4.61918 4.62964 4.67657 4.68846 4.71581 4.73326 4.85124 4.88102 4.92500 4.97176 5.03849 5.19354 5.24486 5.28609 5.38294 5.44681 5.72091 5.81904 5.99705 6.34737 6.40251 6.56382 7.68687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.097 3.903 3 C -0.249 4.249 4 C 0.609 3.391 5 O -0.514 6.514 6 N -0.581 5.581 7 N -0.274 5.274 8 C 0.026 3.974 9 C -0.100 4.100 10 C -0.410 4.410 11 Si 1.031 2.969 12 C -0.442 4.442 13 C -0.450 4.450 14 C -0.260 4.260 15 C -0.144 4.144 16 C -0.013 4.013 17 C -0.043 4.043 18 O -0.542 6.542 19 Si 0.952 3.048 20 H -0.247 1.247 21 H -0.245 1.245 22 H -0.245 1.245 23 O -0.173 6.173 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.378 0.622 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.157 0.843 43 H 0.096 0.904 44 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 -0.250 1.105 4.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 C -0.255 4.255 4 C 0.398 3.602 5 O -0.389 6.389 6 N -0.325 5.325 7 N -0.090 5.090 8 C -0.102 4.102 9 C -0.138 4.138 10 C -0.496 4.496 11 Si 1.224 2.776 12 C -0.551 4.551 13 C -0.558 4.558 14 C -0.434 4.434 15 C -0.164 4.164 16 C -0.061 4.061 17 C -0.152 4.152 18 O -0.350 6.350 19 Si 0.772 3.228 20 H -0.171 1.171 21 H -0.168 1.168 22 H -0.168 1.168 23 O -0.070 6.070 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.131 0.869 27 H 0.217 0.783 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.175 0.825 43 H 0.114 0.886 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.016 -0.815 1.102 2.438 hybrid contribution 2.369 0.105 -0.201 2.380 sum 4.385 -0.710 0.901 4.533 Atomic orbital electron populations 1.20720 0.83181 1.05503 1.04854 1.22856 0.94001 0.82576 0.96165 1.21067 0.93217 0.93594 1.17586 1.16904 0.85223 0.82409 0.75704 1.90753 1.16141 1.83519 1.48500 1.45335 1.08520 1.01813 1.76828 1.62947 1.52977 0.89849 1.03233 1.22561 0.96537 0.97414 0.93677 1.21179 1.01539 0.92359 0.98754 1.26376 1.05602 1.01904 1.15713 0.79220 0.67957 0.63576 0.66871 1.26016 1.19752 1.04337 1.04973 1.26120 1.06458 1.10615 1.12644 1.28086 1.04663 1.16285 0.94344 1.22512 0.96406 0.93351 1.04116 1.21003 0.82046 0.94301 1.08736 1.23773 0.91203 1.08604 0.91663 1.86461 1.42855 1.63864 1.41809 0.85577 0.81133 0.73275 0.82852 1.17073 1.16826 1.16756 1.83638 1.16280 1.35293 1.71774 0.88869 0.90033 0.86882 0.78345 0.93681 0.90104 0.90841 0.90222 0.90720 0.90087 0.91424 0.90288 0.91365 0.90727 0.91258 0.91063 0.89117 0.92982 0.82510 0.88605 0.76195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.08 9.89 36.00 0.36 0.27 16 2 C 0.10 0.29 7.37 -34.97 -0.26 0.03 16 3 C -0.25 -0.80 6.31 -103.27 -0.65 -1.45 16 4 C 0.61 2.62 7.91 -12.54 -0.10 2.52 16 5 O -0.51 -3.63 15.17 5.27 0.08 -3.55 16 6 N -0.58 -1.21 4.70 30.42 0.14 -1.07 16 7 N -0.27 -0.50 4.15 -56.97 -0.24 -0.73 16 8 C 0.03 0.00 5.38 -4.31 -0.02 -0.02 16 9 C -0.10 0.05 5.74 -26.44 -0.15 -0.10 16 10 C -0.41 0.60 5.04 37.64 0.19 0.79 16 11 Si 1.03 -1.69 11.99 -169.99 -2.04 -3.73 16 12 C -0.44 -0.13 8.65 101.05 0.87 0.74 16 13 C -0.45 0.64 8.65 101.05 0.87 1.51 16 14 C -0.26 -0.09 4.86 60.52 0.29 0.20 16 15 C -0.14 -0.24 10.46 -37.45 -0.39 -0.63 16 16 C -0.01 -0.02 6.24 -35.74 -0.22 -0.25 16 17 C -0.04 0.04 2.97 36.00 0.11 0.15 16 18 O -0.54 0.49 12.84 -35.23 -0.45 0.04 16 19 Si 0.95 -0.66 27.37 -169.99 -4.65 -5.32 16 20 H -0.25 0.35 7.11 56.52 0.40 0.75 16 21 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 22 H -0.24 -0.39 7.11 56.52 0.40 0.01 16 23 O -0.17 -0.51 8.89 7.64 0.07 -0.45 16 24 H 0.09 0.02 8.14 -51.92 -0.42 -0.41 16 25 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.11 0.22 6.48 -51.93 -0.34 -0.11 16 27 H 0.38 -0.05 8.01 -185.16 -1.48 -1.54 16 28 H 0.04 -0.05 7.78 -51.93 -0.40 -0.45 16 29 H 0.08 0.02 8.03 -51.93 -0.42 -0.40 16 30 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 31 H 0.08 0.04 7.96 -51.93 -0.41 -0.38 16 32 H 0.07 -0.14 7.99 -51.93 -0.42 -0.56 16 33 H 0.08 -0.14 7.99 -51.92 -0.42 -0.55 16 34 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 35 H 0.08 0.14 7.96 -51.93 -0.41 -0.27 16 36 H 0.07 0.04 7.96 -51.92 -0.41 -0.37 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 38 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.09 0.13 7.99 -51.93 -0.41 -0.28 16 41 H 0.05 -0.03 7.92 -51.93 -0.41 -0.45 16 42 H 0.16 -0.10 7.75 -52.49 -0.41 -0.51 16 43 H 0.10 -0.34 7.96 -51.93 -0.41 -0.76 16 44 H 0.39 -2.22 8.74 45.56 0.40 -1.82 16 LS Contribution 362.71 15.07 5.47 5.47 Total: 0.00 -7.95 362.71 -8.40 -16.36 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: -7.68 Total: -10.78 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 0.90 Total: 3.76 kcal Atomic # 7 Polarization: -1.70 SS G_CDS: -0.09 Total: -1.80 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.30 Total: -3.96 kcal Atomic # 14 Polarization: -2.36 SS G_CDS: -6.69 Total: -9.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -7.95 -8.40 -16.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13308374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.943 kcal (2) G-P(sol) polarization free energy of solvation -7.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds