Wall clock time and date at job start Sun Mar 7 2021 09:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36416 * 125.79821 * 2 1 4 4 C 1.47382 * 127.19494 * 0.02562 * 3 2 1 5 5 O 1.21610 * 119.99664 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.36594 * 119.99820 * 185.00131 * 6 4 3 8 8 C 1.46363 * 110.99928 * 124.56830 * 7 6 4 9 9 C 1.52618 * 111.89156 * 203.20013 * 8 7 6 10 10 C 1.53932 * 109.30984 * 283.47421 * 9 8 7 11 11 Si 1.87517 * 106.84896 * 57.20793 * 10 9 8 12 12 C 1.86293 * 110.00565 * 75.50256 * 11 10 9 13 13 C 1.86306 * 110.00186 * 196.80578 * 11 10 9 14 14 C 1.47719 * 111.00445 * 248.91369 * 7 6 4 15 15 C 1.47026 * 105.61517 * 180.25954 * 3 2 1 16 16 C 1.34176 * 105.95360 * 359.57695 * 15 3 2 17 17 C 1.50693 * 125.44073 * 180.14455 * 16 15 3 18 18 O 1.42902 * 109.46921 * 300.36063 * 17 16 15 19 19 Si 1.86301 * 109.47513 * 180.36357 * 17 16 15 20 20 H 1.48498 * 109.47319 * 179.97438 * 19 17 16 21 21 H 1.48501 * 109.46603 * 299.99683 * 19 17 16 22 22 H 1.48499 * 109.47330 * 59.99271 * 19 17 16 23 23 O 1.33648 * 125.80470 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46926 * 89.99683 * 1 2 3 25 25 H 1.09001 * 109.47082 * 209.99319 * 1 2 3 26 26 H 1.08994 * 109.47228 * 329.99383 * 1 2 3 27 27 H 0.97000 * 119.99920 * 5.01111 * 6 4 3 28 28 H 1.08991 * 109.00025 * 82.57173 * 8 7 6 29 29 H 1.09000 * 108.92957 * 323.77326 * 8 7 6 30 30 H 1.08999 * 109.50012 * 163.52437 * 9 8 7 31 31 H 1.09004 * 109.52879 * 43.44397 * 9 8 7 32 32 H 1.08998 * 109.97591 * 297.86509 * 10 9 8 33 33 H 1.09010 * 110.05115 * 176.58191 * 10 9 8 34 34 H 1.08998 * 109.47172 * 60.00353 * 12 11 10 35 35 H 1.09001 * 109.47329 * 299.99899 * 12 11 10 36 36 H 1.09010 * 109.47176 * 180.02562 * 12 11 10 37 37 H 1.08992 * 109.47169 * 298.68289 * 13 11 10 38 38 H 1.09005 * 109.47162 * 58.68401 * 13 11 10 39 39 H 1.09003 * 109.46840 * 178.68112 * 13 11 10 40 40 H 1.08999 * 109.94761 * 56.14457 * 14 7 6 41 41 H 1.09000 * 109.94974 * 294.89015 * 14 7 6 42 42 H 1.07999 * 127.02159 * 179.73694 * 15 3 2 43 43 H 1.08992 * 109.47730 * 60.35885 * 17 16 15 44 44 H 0.96705 * 114.00288 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.1064 0.0000 4 6 1.8739 2.5158 0.0005 5 8 0.6889 2.7892 0.0006 6 7 2.7929 3.5016 0.0010 7 7 2.3966 4.8047 0.1046 8 6 3.0564 5.4656 1.2316 9 6 2.2647 6.6730 1.7261 10 6 2.4705 7.8491 0.7545 11 14 1.9289 7.2557 -0.9398 12 6 0.0691 7.1987 -1.0307 13 6 2.5963 8.3923 -2.2565 14 6 2.6348 5.5326 -1.1586 15 6 3.6849 0.5992 -0.0064 16 6 3.5860 -0.7389 -0.0001 17 6 4.7459 -1.7009 -0.0001 18 8 5.5430 -1.4859 -1.1665 19 14 4.1028 -3.4494 -0.0010 20 1 5.2459 -4.3972 -0.0017 21 1 3.2746 -3.6727 1.2112 22 1 3.2752 -3.6718 -1.2138 23 8 2.2889 -1.0839 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 3.7357 3.2857 -0.0724 28 1 4.0474 5.7947 0.9193 29 1 3.1611 4.7513 2.0483 30 1 2.6147 6.9558 2.7189 31 1 1.2054 6.4202 1.7721 32 1 3.5226 8.1331 0.7311 33 1 1.8624 8.6996 1.0631 34 1 -0.3340 8.1960 -0.8545 35 1 -0.3110 6.5140 -0.2726 36 1 -0.2360 6.8525 -2.0183 37 1 2.1989 9.3959 -2.1057 38 1 3.6843 8.4193 -2.1958 39 1 2.2962 8.0264 -3.2385 40 1 2.1299 5.0256 -1.9808 41 1 3.7048 5.5916 -1.3577 42 1 4.5927 1.1842 -0.0122 43 1 5.3534 -1.5377 0.8900 44 1 6.3092 -2.0721 -1.2329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13308374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:02 Heat of formation + Delta-G solvation = -54.653231 kcal Electronic energy + Delta-G solvation = -24372.394954 eV Core-core repulsion = 20837.281516 eV Total energy + Delta-G solvation = -3535.113438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.81956 -40.85683 -38.51768 -37.92390 -34.98318 -34.18389 -33.25368 -31.57347 -29.42166 -29.30170 -28.34032 -27.55072 -26.12827 -24.95951 -23.72326 -22.22485 -21.77797 -20.74337 -18.85571 -18.46384 -18.25585 -17.40962 -17.05846 -16.70281 -16.19054 -15.92687 -15.34826 -15.18925 -14.82952 -14.74603 -14.66276 -14.41201 -14.13751 -14.08587 -13.96306 -13.87514 -13.78875 -13.48964 -13.18211 -13.11077 -13.10221 -12.98143 -12.60494 -12.21466 -12.07933 -12.02621 -11.95224 -11.38137 -10.96896 -10.84666 -10.78853 -10.50147 -10.31323 -10.16641 -9.71700 -9.59079 0.18830 0.78685 1.04734 1.24182 1.45287 1.49471 1.65145 1.83723 1.93006 1.93788 2.16950 2.27320 2.62957 3.20174 3.40608 3.62389 3.69478 3.71078 4.02039 4.10757 4.17510 4.29627 4.41322 4.44760 4.54340 4.55068 4.62026 4.69200 4.73515 4.78657 4.81367 4.82489 4.85564 4.86342 4.93346 5.10767 5.11983 5.17995 5.31843 5.48787 5.58441 5.67434 5.82197 5.85792 6.20432 6.39758 6.74236 7.49371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.084 3.916 3 C -0.264 4.264 4 C 0.605 3.395 5 O -0.552 6.552 6 N -0.573 5.573 7 N -0.297 5.297 8 C 0.025 3.975 9 C -0.102 4.102 10 C -0.411 4.411 11 Si 1.092 2.908 12 C -0.463 4.463 13 C -0.454 4.454 14 C -0.274 4.274 15 C -0.144 4.144 16 C -0.027 4.027 17 C -0.036 4.036 18 O -0.558 6.558 19 Si 0.980 3.020 20 H -0.229 1.229 21 H -0.266 1.266 22 H -0.284 1.284 23 O -0.182 6.182 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.390 0.610 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.180 0.820 43 H 0.130 0.870 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.397 0.364 1.377 6.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 C -0.270 4.270 4 C 0.394 3.606 5 O -0.431 6.431 6 N -0.316 5.316 7 N -0.113 5.113 8 C -0.102 4.102 9 C -0.141 4.141 10 C -0.497 4.497 11 Si 1.281 2.719 12 C -0.569 4.569 13 C -0.563 4.563 14 C -0.445 4.445 15 C -0.163 4.163 16 C -0.075 4.075 17 C -0.145 4.145 18 O -0.369 6.369 19 Si 0.803 3.197 20 H -0.151 1.151 21 H -0.190 1.190 22 H -0.210 1.210 23 O -0.080 6.080 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.230 0.770 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.197 0.803 43 H 0.147 0.853 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.268 -0.233 1.375 4.490 hybrid contribution 1.653 -0.123 -0.315 1.687 sum 5.922 -0.356 1.060 6.026 Atomic orbital electron populations 1.20723 0.82422 1.05679 1.05222 1.23195 0.94787 0.82765 0.96206 1.21156 0.94390 0.93125 1.18287 1.17143 0.85030 0.83175 0.75227 1.90725 1.17631 1.84147 1.50553 1.45241 1.08773 1.01897 1.75695 1.62955 1.54232 0.89775 1.04386 1.22602 0.97304 0.97364 0.92919 1.21203 1.00612 0.92628 0.99622 1.26393 1.06597 1.01623 1.15091 0.78308 0.65062 0.61774 0.66764 1.26312 1.22721 1.04067 1.03791 1.26154 1.07026 1.10747 1.12353 1.28345 1.05617 1.17298 0.93238 1.22756 0.96324 0.93482 1.03785 1.21679 0.82235 0.95267 1.08282 1.23817 0.90791 1.06927 0.93013 1.86413 1.43865 1.64794 1.41869 0.85218 0.80497 0.74223 0.79779 1.15136 1.18994 1.20959 1.83652 1.17039 1.35405 1.71880 0.88373 0.88288 0.88162 0.76983 0.91940 0.90576 0.89918 0.91728 0.89374 0.89462 0.90769 0.92300 0.92136 0.90257 0.90457 0.91324 0.90845 0.91605 0.80294 0.85290 0.73761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 9.89 71.24 0.70 0.38 16 2 C 0.08 0.64 7.37 25.26 0.19 0.82 16 3 C -0.26 -2.05 6.31 -18.99 -0.12 -2.17 16 4 C 0.61 6.31 7.91 86.65 0.69 6.99 16 5 O -0.55 -9.32 15.17 -4.06 -0.06 -9.38 16 6 N -0.57 -2.89 4.70 -175.92 -0.83 -3.72 16 7 N -0.30 -1.31 4.15 -334.16 -1.39 -2.70 16 8 C 0.03 0.00 5.38 86.28 0.46 0.46 16 9 C -0.10 0.11 5.74 30.78 0.18 0.29 16 10 C -0.41 1.66 5.04 72.30 0.36 2.02 16 11 Si 1.09 -3.73 11.99 68.60 0.82 -2.91 16 12 C -0.46 -0.97 8.65 113.37 0.98 0.01 16 13 C -0.45 1.79 8.65 113.37 0.98 2.77 16 14 C -0.27 -0.29 4.86 127.53 0.62 0.33 16 15 C -0.14 -0.47 10.46 23.65 0.25 -0.23 16 16 C -0.03 -0.10 6.24 24.76 0.15 0.05 16 17 C -0.04 0.11 2.97 71.23 0.21 0.32 16 18 O -0.56 1.78 12.84 -148.98 -1.91 -0.13 16 19 Si 0.98 -1.39 27.37 68.60 1.88 0.49 16 20 H -0.23 1.02 7.11 99.48 0.71 1.72 16 21 H -0.27 -0.46 7.11 99.48 0.71 0.25 16 22 H -0.28 -1.42 7.11 99.48 0.71 -0.71 16 23 O -0.18 -1.30 8.89 4.44 0.04 -1.26 16 24 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 25 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 26 H 0.10 0.67 6.48 -2.39 -0.02 0.65 16 27 H 0.39 -0.08 8.01 -215.50 -1.73 -1.81 16 28 H 0.06 -0.23 7.78 -2.39 -0.02 -0.25 16 29 H 0.08 0.05 8.03 -2.39 -0.02 0.03 16 30 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.06 0.13 7.96 -2.38 -0.02 0.11 16 32 H 0.09 -0.54 7.99 -2.39 -0.02 -0.56 16 33 H 0.09 -0.41 7.99 -2.38 -0.02 -0.43 16 34 H 0.07 0.01 7.96 -2.39 -0.02 0.00 16 35 H 0.06 0.36 7.96 -2.39 -0.02 0.34 16 36 H 0.06 0.19 7.96 -2.38 -0.02 0.17 16 37 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 38 H 0.08 -0.39 7.96 -2.38 -0.02 -0.41 16 39 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 40 H 0.07 0.33 7.99 -2.39 -0.02 0.31 16 41 H 0.07 -0.14 7.92 -2.39 -0.02 -0.16 16 42 H 0.18 -0.43 7.75 -2.91 -0.02 -0.45 16 43 H 0.13 -1.23 7.96 -2.39 -0.02 -1.25 16 44 H 0.41 -5.44 8.74 -74.05 -0.65 -6.08 16 Total: 0.00 -20.36 362.71 3.59 -16.76 By element: Atomic # 1 Polarization: -8.61 SS G_CDS: -0.62 Total: -9.22 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.66 Total: 12.06 kcal Atomic # 7 Polarization: -4.20 SS G_CDS: -2.21 Total: -6.41 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.93 Total: -10.76 kcal Atomic # 14 Polarization: -5.12 SS G_CDS: 2.70 Total: -2.42 kcal Total: -20.36 3.59 -16.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13308374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.888 kcal (2) G-P(sol) polarization free energy of solvation -20.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds