Wall clock time and date at job start Sun Mar 7 2021 09:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86296 * 110.06442 * 2 1 4 4 C 1.87530 * 110.00365 * 121.36632 * 2 1 3 5 5 C 1.53926 * 106.84798 * 75.50085 * 4 2 1 6 6 C 1.52622 * 109.31171 * 57.20853 * 5 4 2 7 7 N 1.46359 * 111.88864 * 283.47280 * 6 5 4 8 8 N 1.36605 * 110.99785 * 203.19835 * 7 6 5 9 9 C 1.34769 * 119.99845 * 116.05055 * 8 7 6 10 10 O 1.21599 * 120.00264 * 359.97438 * 9 8 7 11 11 C 1.47562 * 120.00160 * 179.97438 * 9 8 7 12 12 C 1.39840 * 119.99482 * 359.73008 * 11 9 8 13 13 C 1.36569 * 119.99347 * 179.69481 * 12 11 9 14 14 C 1.39822 * 120.00178 * 0.57270 * 13 12 11 15 15 C 1.47559 * 120.00161 * 179.69897 * 14 13 12 16 16 C 1.34980 * 125.27079 * 0.02562 * 15 14 13 17 17 C 1.37802 * 114.69654 * 179.97438 * 16 15 14 18 18 C 1.33746 * 115.08509 * 359.97438 * 17 16 15 19 19 C 1.50693 * 125.12023 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.46949 * 65.00328 * 19 18 17 21 21 Si 1.86301 * 109.47060 * 185.00004 * 19 18 17 22 22 H 1.48506 * 109.46991 * 60.00128 * 21 19 18 23 23 H 1.48499 * 109.46976 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47339 * 300.00409 * 21 19 18 25 25 S 1.75860 * 109.75675 * 359.75704 * 18 17 16 26 26 C 1.39824 * 120.00161 * 359.72173 * 14 13 12 27 27 C 1.36563 * 120.00113 * 359.97438 * 26 14 13 28 28 C 1.47724 * 111.30531 * 79.02629 * 7 6 5 29 29 H 1.09002 * 109.47312 * 298.63768 * 1 2 3 30 30 H 1.09004 * 109.47242 * 58.63960 * 1 2 3 31 31 H 1.08999 * 109.46951 * 178.63219 * 1 2 3 32 32 H 1.08999 * 109.47582 * 181.35928 * 3 2 1 33 33 H 1.08995 * 109.47566 * 301.36700 * 3 2 1 34 34 H 1.09003 * 109.47244 * 61.36400 * 3 2 1 35 35 H 1.08997 * 109.97866 * 194.83907 * 4 2 1 36 36 H 1.09003 * 109.97340 * 316.07395 * 4 2 1 37 37 H 1.09007 * 109.49731 * 177.15726 * 5 4 2 38 38 H 1.08997 * 109.49742 * 297.22020 * 5 4 2 39 39 H 1.08993 * 108.99940 * 44.09714 * 6 5 4 40 40 H 1.08998 * 108.99652 * 162.93788 * 6 5 4 41 41 H 0.97003 * 119.99892 * 296.04090 * 8 7 6 42 42 H 1.07991 * 120.00192 * 359.97438 * 12 11 9 43 43 H 1.07998 * 119.99570 * 180.29671 * 13 12 11 44 44 H 1.07996 * 122.65515 * 359.95857 * 16 15 14 45 45 H 1.08000 * 122.45647 * 179.97438 * 17 16 15 46 46 H 1.08994 * 109.47060 * 305.00341 * 19 18 17 47 47 H 0.96707 * 114.00250 * 180.02562 * 20 19 18 48 48 H 1.07996 * 120.00143 * 180.02562 * 26 14 13 49 49 H 1.08006 * 119.99773 * 179.97438 * 27 26 14 50 50 H 1.08995 * 109.94949 * 180.31738 * 28 7 6 51 51 H 1.08996 * 109.94990 * 59.05933 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5044 -0.9172 1.5046 5 6 2.3105 -2.4189 1.2279 6 6 3.0398 -2.7933 -0.0594 7 7 2.3059 -2.3583 -1.2486 8 7 2.6567 -3.1018 -2.3395 9 6 1.7405 -3.8824 -2.9458 10 8 0.6017 -3.9253 -2.5215 11 6 2.1192 -4.6852 -4.1246 12 6 3.4273 -4.6317 -4.6160 13 6 3.7793 -5.3794 -5.7032 14 6 2.8288 -6.1894 -6.3321 15 6 3.2075 -6.9922 -7.5109 16 6 4.4361 -7.0258 -8.0690 17 6 4.5479 -7.8528 -9.1656 18 6 3.4257 -8.4948 -9.5084 19 6 3.2928 -9.4504 -10.6660 20 8 4.1072 -10.6006 -10.4300 21 14 1.5131 -9.9741 -10.8376 22 1 0.6668 -8.7787 -11.0827 23 1 1.3822 -10.9163 -11.9779 24 1 1.0720 -10.6452 -9.5885 25 16 2.1305 -8.0605 -8.4010 26 6 1.5193 -6.2382 -5.8445 27 6 1.1687 -5.4953 -4.7536 28 6 2.5043 -0.9169 -1.5044 29 1 -0.3634 0.4925 0.9019 30 1 -0.3634 0.5348 -0.8776 31 1 -0.3633 -1.0274 -0.0245 32 1 3.5917 1.7388 -0.0244 33 1 2.1243 2.2747 -0.8774 34 1 2.1641 2.2602 0.9020 35 1 3.5623 -0.6990 1.6508 36 1 1.9385 -0.6239 2.3888 37 1 2.7170 -2.9973 2.0577 38 1 1.2475 -2.6347 1.1204 39 1 4.0240 -2.3249 -0.0587 40 1 3.1624 -3.8757 -0.0958 41 1 3.5651 -3.0678 -2.6779 42 1 4.1602 -4.0025 -4.1331 43 1 4.7908 -5.3417 -6.0798 44 1 5.2658 -6.4498 -7.6867 45 1 5.4737 -7.9738 -9.7083 46 1 3.6166 -8.9578 -11.5827 47 1 4.0710 -11.2599 -11.1366 48 1 0.7852 -6.8641 -6.3301 49 1 0.1570 -5.5327 -4.3772 50 1 1.9446 -0.6158 -2.3899 51 1 3.5646 -0.7065 -1.6440 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13308390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:14 Heat of formation + Delta-G solvation = -11.097054 kcal Electronic energy + Delta-G solvation = -30177.248527 eV Core-core repulsion = 26099.652325 eV Total energy + Delta-G solvation = -4077.596202 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 390.135 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.35459 -40.10116 -39.08007 -38.21685 -37.42682 -34.97086 -33.64711 -32.46525 -31.49251 -30.33540 -29.41179 -28.40840 -27.62813 -27.22997 -25.24654 -24.27998 -23.83404 -23.19764 -21.91402 -21.52138 -20.10937 -19.31060 -18.69440 -18.29094 -18.12776 -17.03508 -16.72865 -16.33033 -16.30688 -15.74587 -15.57346 -15.38032 -15.11214 -14.95446 -14.79861 -14.79502 -14.55447 -14.39263 -14.35914 -14.11919 -14.07760 -13.84226 -13.58196 -13.35826 -13.33456 -13.25850 -13.14723 -13.04668 -12.99524 -12.68014 -12.39758 -12.25006 -12.10821 -12.08227 -12.02733 -11.58938 -11.29197 -10.87508 -10.72966 -10.68682 -10.42696 -10.40638 -10.19722 -10.12066 -9.70529 -9.52447 -9.00993 -0.85753 0.26748 0.33239 0.37325 0.71465 1.04093 1.36902 1.37676 1.38388 1.63068 1.73533 1.80986 1.81994 2.06323 2.11849 2.53455 2.89483 3.28150 3.34838 3.44270 3.65128 3.71317 3.77488 3.81680 3.95370 4.10993 4.17822 4.26808 4.29886 4.35629 4.41933 4.49463 4.53124 4.60167 4.61958 4.64961 4.65782 4.70969 4.80005 4.87600 4.88931 4.93481 4.99076 5.03308 5.09923 5.23510 5.24198 5.28283 5.30124 5.37241 5.41947 5.47045 5.69221 5.72295 5.78029 6.32411 6.44459 6.45743 7.59142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 1.032 2.968 3 C -0.450 4.450 4 C -0.410 4.410 5 C -0.101 4.101 6 C 0.025 3.975 7 N -0.275 5.275 8 N -0.583 5.583 9 C 0.574 3.426 10 O -0.508 6.508 11 C -0.132 4.132 12 C -0.080 4.080 13 C -0.109 4.109 14 C 0.014 3.986 15 C -0.146 4.146 16 C -0.118 4.118 17 C -0.101 4.101 18 C -0.174 4.174 19 C -0.040 4.040 20 O -0.542 6.542 21 Si 0.887 3.113 22 H -0.232 1.232 23 H -0.229 1.229 24 H -0.230 1.230 25 S 0.123 5.877 26 C -0.120 4.120 27 C -0.048 4.048 28 C -0.260 4.260 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.377 0.623 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.087 0.913 47 H 0.383 0.617 48 H 0.130 0.870 49 H 0.143 0.857 50 H 0.091 0.909 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.188 1.144 -2.283 4.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.225 2.775 3 C -0.558 4.558 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.103 4.103 7 N -0.091 5.091 8 N -0.328 5.328 9 C 0.361 3.639 10 O -0.381 6.381 11 C -0.136 4.136 12 C -0.099 4.099 13 C -0.129 4.129 14 C 0.011 3.989 15 C -0.263 4.263 16 C -0.149 4.149 17 C -0.132 4.132 18 C -0.291 4.291 19 C -0.153 4.153 20 O -0.348 6.348 21 Si 0.706 3.294 22 H -0.155 1.155 23 H -0.151 1.151 24 H -0.152 1.152 25 S 0.391 5.609 26 C -0.139 4.139 27 C -0.066 4.066 28 C -0.433 4.433 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.216 0.784 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.105 0.895 47 H 0.231 0.769 48 H 0.148 0.852 49 H 0.161 0.839 50 H 0.110 0.890 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.599 0.615 -1.374 1.620 hybrid contribution 3.412 0.384 -1.008 3.578 sum 4.010 0.999 -2.382 4.770 Atomic orbital electron populations 1.26030 1.19826 1.05250 1.04109 0.79205 0.68008 0.65519 0.64778 1.26117 1.06291 1.18576 1.04843 1.26380 1.06096 1.02734 1.14412 1.21183 1.01987 0.95757 0.94983 1.22590 0.95855 1.01532 0.90281 1.62952 1.52493 0.99674 0.93995 1.45513 1.12678 1.45919 1.28701 1.18009 0.84837 0.78637 0.82375 1.90792 1.19103 1.63879 1.64348 1.19986 0.94920 1.01114 0.97611 1.20956 0.94974 0.98034 0.95892 1.20856 0.99520 0.96525 0.95992 1.18282 0.93739 0.94676 0.92157 1.22986 0.97508 1.04716 1.01115 1.20369 0.96767 1.01001 0.96748 1.19980 0.98770 0.96797 0.97624 1.23841 0.97634 1.05147 1.02505 1.23955 1.07026 0.88051 0.96287 1.86524 1.68758 1.30485 1.49043 0.86373 0.75441 0.83533 0.84037 1.15523 1.15114 1.15229 1.84236 1.13318 1.40406 1.22988 1.20975 0.95264 1.00396 0.97217 1.20930 0.99863 0.92578 0.93267 1.28079 1.04554 0.93178 1.17518 0.91342 0.91370 0.90279 0.91232 0.91047 0.90691 0.90713 0.90074 0.90841 0.90188 0.93725 0.90164 0.78376 0.85426 0.84812 0.83631 0.83557 0.89530 0.76908 0.85180 0.83940 0.89015 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.03 8.65 101.05 0.87 0.84 16 2 Si 1.03 -2.09 11.99 -169.99 -2.04 -4.13 16 3 C -0.45 0.84 8.65 101.05 0.87 1.71 16 4 C -0.41 0.64 5.04 37.64 0.19 0.83 16 5 C -0.10 0.04 5.74 -26.44 -0.15 -0.12 16 6 C 0.03 0.00 5.38 -4.31 -0.02 -0.02 16 7 N -0.28 -0.38 4.14 -56.97 -0.24 -0.62 16 8 N -0.58 -0.70 4.65 30.46 0.14 -0.56 16 9 C 0.57 2.06 7.87 -12.46 -0.10 1.96 16 10 O -0.51 -3.80 16.65 5.28 0.09 -3.71 16 11 C -0.13 -0.23 5.88 -104.90 -0.62 -0.85 16 12 C -0.08 0.04 9.48 -39.59 -0.38 -0.33 16 13 C -0.11 0.04 9.48 -39.59 -0.38 -0.34 16 14 C 0.01 0.02 5.88 -104.91 -0.62 -0.60 16 15 C -0.15 -0.21 6.37 -36.94 -0.24 -0.44 16 16 C -0.12 -0.06 9.64 -40.90 -0.39 -0.45 16 17 C -0.10 -0.08 10.03 -41.32 -0.41 -0.50 16 18 C -0.17 -0.23 5.74 -35.89 -0.21 -0.43 16 19 C -0.04 0.02 2.95 36.00 0.11 0.13 16 20 O -0.54 0.09 12.85 -35.23 -0.45 -0.36 16 21 Si 0.89 -0.42 26.25 -169.99 -4.46 -4.88 16 22 H -0.23 -0.04 7.11 56.52 0.40 0.36 16 23 H -0.23 0.24 7.11 56.52 0.40 0.64 16 24 H -0.23 -0.25 7.11 56.52 0.40 0.15 16 25 S 0.12 0.20 19.48 -107.50 -2.09 -1.90 16 26 C -0.12 -0.16 9.54 -39.59 -0.38 -0.54 16 27 C -0.05 -0.09 9.53 -39.59 -0.38 -0.47 16 28 C -0.26 0.12 4.86 60.52 0.29 0.42 16 29 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 30 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 31 H 0.08 0.13 7.96 -51.93 -0.41 -0.28 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.07 -0.15 7.99 -51.93 -0.42 -0.57 16 36 H 0.08 -0.14 7.99 -51.93 -0.42 -0.56 16 37 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.08 0.06 7.96 -51.93 -0.41 -0.36 16 39 H 0.04 -0.06 7.78 -51.93 -0.40 -0.46 16 40 H 0.08 0.04 8.03 -51.93 -0.42 -0.38 16 41 H 0.38 -0.59 6.84 -185.15 -1.27 -1.86 16 42 H 0.13 -0.42 6.38 -52.49 -0.34 -0.76 16 43 H 0.13 -0.34 6.74 -52.49 -0.35 -0.69 16 44 H 0.15 -0.26 6.88 -52.49 -0.36 -0.62 16 45 H 0.15 -0.09 8.06 -52.49 -0.42 -0.51 16 46 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 47 H 0.38 -1.81 8.74 45.56 0.40 -1.42 16 48 H 0.13 0.04 7.26 -52.49 -0.38 -0.34 16 49 H 0.14 0.28 7.64 -52.48 -0.40 -0.12 16 50 H 0.09 0.02 7.99 -51.93 -0.41 -0.39 16 51 H 0.05 -0.09 7.92 -51.93 -0.41 -0.50 16 LS Contribution 426.14 15.07 6.42 6.42 Total: 0.00 -8.53 426.14 -12.68 -21.21 By element: Atomic # 1 Polarization: -4.16 SS G_CDS: -8.13 Total: -12.29 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.92 Total: 0.81 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -0.09 Total: -1.17 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.36 Total: -4.07 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: -6.50 Total: -9.01 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.09 Total: -1.90 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -8.53 -12.68 -21.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13308390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.111 kcal (2) G-P(sol) polarization free energy of solvation -8.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds